Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

28170057 .. 28171149

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1187300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACAGGTTCTGGTTCTCCTTGTGGTGCCTGCAAGTTCTTGAGAAGGAAATGCATTAGGGGTTGCATTTTTGCACCTTACTTCTGCCATGAACAAGGTGCTACCCACTTCGCAACCATCCATAAGGTCTTCGGGGCAAGCAATGTGTCGAAATTGCTTGCTCAACTCTCCGCCAGTGACCGATGCAGAGCCGCGCTTACAATCTCATATGAAGCTCAAGCTAGGGTTCAAGATCCTATATATGGCTGTGTTTCCCATATTTTTTCTCTCCAACAACAGATTATTAGTTTAGAAGCACAACTAGCTTCTGTCAAGGAACAAGCAGCTAAAGGCTATTCCAGCAATAATTTCCAAGGTTGGCTTCAGTCGGAAAATTCAAACACACTGATGCCACAAAGTGTGATTAATGAATCAATAACACCAGTATATTCCGGAAACAAGAACCCTAACTCTTTCGCGGCTAATGAAAATTCCATGATTCCAGAAGTACTAAATGACATGTACGGAAGCTACGGAGAGTCTTATAATTCCACGTGTTCATTAGACATGCAAATGAGCAATATTTCATGGGGTTTTGATCAAGATCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

198

Amino Acids

21.62

Weight (kDa)

5.92

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 105	4.3e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	2 cut(s)	194, 458
AccIII	TCCGGA	1 cut(s)	431
AciI	CCGC	3 cut(s)	171, 192, 458
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	373, 469
AcuI	CTGAAG	1 cut(s)	347
AcvI	CACGTG	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	489, 503
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflIII	ACRYGT	2 cut(s)	498, 533
AgsI	TTSAA	2 cut(s)	230, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	5 cut(s)	215, 221, 305, 326, 510
AluI	AGCT	5 cut(s)	215, 221, 305, 326, 510
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	373, 469
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	26
BbrPI	CACGTG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	577
BfaI	CTAG	2 cut(s)	222, 302
BisI	GCNGC	3 cut(s)	192, 324, 459
BlsI	GCNGC	3 cut(s)	193, 325, 460
BmcAI	AGTACT	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	2 cut(s)	173, 378
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	2 cut(s)	61, 201
BsaAI	YACGTR	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	174, 422
Bse3DI	GCAATG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	174, 422
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	194, 458
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	232, 577, 583
BspACI	CCGC	3 cut(s)	171, 192, 458
BspEI	TCCGGA	1 cut(s)	431
BspFNI	CGCG	2 cut(s)	194, 458
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	174, 422
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	3 cut(s)	232, 577, 583
BssT1I	CCWWGG	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	31, 139, 159
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	194, 458
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	235, 580, 586
BstMBI	GATC	3 cut(s)	232, 577, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 339
BstNSI	RCATGY	2 cut(s)	502, 550
BstUI	CGCG	2 cut(s)	194, 458
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	181, 383
Cac8I	GCNNGC	3 cut(s)	31, 139, 159
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	488, 502
CviAII	CATG	6 cut(s)	89, 475, 499, 547, 567, 587
CviQI	GTAC	2 cut(s)	488, 502
DpnI	GATC	3 cut(s)	234, 579, 585
DpnII	GATC	3 cut(s)	232, 577, 583
DraIII	CACNNNGTG	1 cut(s)	398
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	347
Eco72I	CACGTG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	6 cut(s)	92, 478, 502, 550, 570, 590
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	6 cut(s)	88, 474, 498, 546, 566, 586
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	3 cut(s)	192, 324, 459
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	192, 324, 459
FspBI	CTAG	2 cut(s)	222, 302
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	3 cut(s)	192, 324, 459
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	6 cut(s)	92, 478, 502, 550, 570, 590
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	410, 478, 518
HpaII	CCGG	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	6 cut(s)	40, 230, 432, 482, 581, 587
HpyAV	CCTTC	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	6 cut(s)	33, 54, 66, 74, 186, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 339
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	6 cut(s)	92, 478, 502, 550, 570, 590
HspAI	GCGC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	232, 577, 583
LpnPI	CCDG	6 cut(s)	43, 187, 352, 435, 445, 495
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	2 cut(s)	173, 378
MaeI	CTAG	2 cut(s)	222, 302
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	234, 579, 585
MboI	GATC	3 cut(s)	232, 577, 583
MboII	GAAGA	1 cut(s)	121
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	5 cut(s)	152, 346, 373, 469, 526
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	2 cut(s)	295, 348
Mph1103I	ATGCAT	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	431
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	386, 551
MspI	CCGG	1 cut(s)	432
MvnI	CGCG	2 cut(s)	194, 458
MwoI	GCNNNNNNNGC	2 cut(s)	302, 339
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	232, 577, 583
NlaIII	CATG	6 cut(s)	92, 478, 502, 550, 570, 590
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	2 cut(s)	502, 550
PagI	TCATGA	1 cut(s)	586
PciI	ACATGT	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	410, 478
PkrI	GCNGC	3 cut(s)	193, 325, 460
PleI	GAGTC	1 cut(s)	526
PmaCI	CACGTG	1 cut(s)	534
PmlI	CACGTG	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	526
Ppu21I	YACGTR	1 cut(s)	534
PscI	ACATGT	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	525
PspCI	CACGTG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	489, 503
RsaNI	GTAC	2 cut(s)	488, 502
RseI	CAYNNNNRTG	2 cut(s)	386, 551
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	192, 324, 459
Sau3AI	GATC	3 cut(s)	232, 577, 583
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	173, 378
SmiMI	CAYNNNNRTG	2 cut(s)	386, 551
SmlI	CTYRAG	2 cut(s)	40, 216
SmoI	CTYRAG	2 cut(s)	40, 216
Sse9I	AATT	5 cut(s)	152, 346, 373, 469, 526
SsiI	CCGC	3 cut(s)	171, 192, 458
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	2 cut(s)	222, 302
StyI	CCWWGG	1 cut(s)	352
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	149
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	5 cut(s)	152, 346, 373, 469, 526
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	2 cut(s)	194, 461
TfiI	GAWTC	2 cut(s)	410, 478
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	181, 390
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	6 cut(s)	105, 225, 423, 480, 528, 555
TspGWI	ACGGA	2 cut(s)	519, 528
TspRI	CASTG	2 cut(s)	181, 390
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	2 cut(s)	373, 469
XceI	RCATGY	2 cut(s)	502, 550
XspI	CTAG	2 cut(s)	222, 302
ZrmI	AGTACT	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.