Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Reverse (-)

19327449 .. 19328248

Gene Structure 800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACTGGCTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTGAGGGGTTGTATTTTTGCACCTTATTTCTGCCATGAAAATGGCGCTACCCATTTTGCTGCCATCCATAAGGTTTTCGGCGCAAGCAATGTGTCGAAGCTGCTGGCTCACCTTCCGGTGAGTGATCGTTGTGAAGCTGCAGTGACTATCTCATATGAAGCTCAGGCCAGGCTCCAAGATCCCATTTATGGCTGTGTTTCACATATTTTTGCTCTCCAACAACAGGTTGTCAACCTCCAGGCACAATTAGCTTCCCTCAAGGATCAAGCACCTCAAAGCTTCGTGAATGGCTCTGCAGCTGTAGCAAACCCTAACGAGAATTGGTTTCCTGATTTAGAGAAATCATCTAACTCAGTGCCCCAAGTCAATTCAAATTACCATATCAATAATGGTGGAACAACATCATACTATGAGAACGGAATTATGAGTTCAAACTCCATTGGGAGTAGTAATTATGATCAAAACTCAGGAATCCGGGATGAAAATGCGTCCTATGGAAGCTTTGAAGAGGTGTCTCCTTCCCTGTCTTCTTTCAACATGCAAATGAATAACAGGCAATATTGGGGTAATTATGATCGGGACGTGGATGAGCTTCAATCTATGGCTTTCAGCTATGTTGATCAGCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

228

Amino Acids

25.05

Weight (kDa)

5.57

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 105	3.8e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	227, 324
AfiI	CCNNNNNNNGG	2 cut(s)	242, 277
AgsI	TTSAA	5 cut(s)	426, 486, 560, 589, 650
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	2 cut(s)	221, 291
AluBI	AGCT	9 cut(s)	154, 191, 215, 305, 333, 353, 555, 646, 666
AluI	AGCT	9 cut(s)	154, 191, 215, 305, 333, 353, 555, 646, 666
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	2 cut(s)	227, 324
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	113, 154, 191, 350
AspLEI	GCGC	2 cut(s)	101, 137
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	155, 184
BaeGI	GKGCMC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	100, 141, 178, 362
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	223, 293
BclI	TGATCA	2 cut(s)	511, 673
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	573
BfmI	CTRYAG	3 cut(s)	192, 348, 354
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	4 cut(s)	114, 155, 192, 351
BlsI	GCNGC	4 cut(s)	115, 156, 193, 352
Bme1390I	CCNGG	3 cut(s)	223, 293, 530
BmgBI	CACGTC	1 cut(s)	637
BmiI	GGNNCC	2 cut(s)	28, 227
BmrFI	CCNGG	3 cut(s)	223, 293, 530
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	61, 296
BpuMI	CCSGG	1 cut(s)	530
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 277
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	223, 293
BseGI	GGATG	3 cut(s)	117, 538, 646
BseLI	CCNNNNNNNGG	2 cut(s)	242, 277
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	230, 420, 534
BseNI	ACTGG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	100, 141, 178, 362
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	170, 529
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	242, 277
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	3 cut(s)	229, 419, 533
BspLI	GGNNCC	2 cut(s)	28, 227
BspMAI	CTGCAG	2 cut(s)	196, 352
BspPI	GGATC	2 cut(s)	227, 324
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
Bst2UI	CCWGG	2 cut(s)	223, 293
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	31, 139, 159
BstDEI	CTNAG	3 cut(s)	216, 406, 520
BstF5I	GGATG	3 cut(s)	117, 538, 646
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	101, 137
BstKTI	GATC	6 cut(s)	181, 235, 319, 514, 631, 676
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 356
BstNI	CCWGG	2 cut(s)	223, 293
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	3 cut(s)	221, 291, 528
BstSFI	CTRYAG	3 cut(s)	192, 348, 354
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	100, 141, 178, 362
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	117, 538, 646
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 414
Cac8I	GCNNGC	3 cut(s)	31, 139, 159
CfoI	GCGC	2 cut(s)	101, 137
CseI	GACGC	1 cut(s)	531
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	2 cut(s)	89, 592
DdeI	CTNAG	3 cut(s)	216, 406, 520
DpnI	GATC	6 cut(s)	180, 234, 318, 513, 630, 675
DpnII	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	221, 291
FaeI	CATG	2 cut(s)	92, 595
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	2 cut(s)	88, 591
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	2 cut(s)	511, 673
Fnu4HI	GCNGC	4 cut(s)	114, 155, 192, 351
FokI	GGATG	3 cut(s)	104, 545, 653
Fsp4HI	GCNGC	4 cut(s)	114, 155, 192, 351
GlaI	GCGC	2 cut(s)	100, 136
GluI	GCNGC	4 cut(s)	114, 155, 192, 351
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	2 cut(s)	170, 529
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	2 cut(s)	101, 137
Hin1II	CATG	2 cut(s)	92, 595
Hin6I	GCGC	2 cut(s)	99, 135
HinP1I	GCGC	2 cut(s)	99, 135
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	331, 553
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	2 cut(s)	170, 529
HphI	GGTGA	2 cut(s)	155, 184
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188III	TCNNGA	6 cut(s)	40, 337, 383, 522, 632, 684
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	176, 582
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	5 cut(s)	33, 74, 194, 350, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 356
HpyF3I	CTNAG	3 cut(s)	216, 406, 520
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	2 cut(s)	92, 595
HspAI	GCGC	2 cut(s)	99, 135
Ksp22I	TGATCA	2 cut(s)	511, 673
Kzo9I	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
LmnI	GCTCC	2 cut(s)	26, 231
Lsp1109I	GCAGC	4 cut(s)	100, 141, 178, 362
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	6 cut(s)	180, 234, 318, 513, 630, 675
MboI	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
MboII	GAAGA	3 cut(s)	57, 572, 573
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	7 cut(s)	299, 373, 421, 427, 474, 505, 622
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	51, 299, 320, 336, 556
MslI	CAYNNNNRTG	2 cut(s)	93, 596
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	170, 529
MspR9I	CCNGG	3 cut(s)	223, 293, 530
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	2 cut(s)	223, 293
MwoI	GCNNNNNNNGC	2 cut(s)	302, 356
NciI	CCSGG	1 cut(s)	530
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
NlaIII	CATG	2 cut(s)	92, 595
NlaIV	GGNNCC	2 cut(s)	28, 227
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	595
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	525
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	4 cut(s)	115, 156, 193, 352
Psp6I	CCWGG	2 cut(s)	221, 291
PspGI	CCWGG	2 cut(s)	221, 291
PspN4I	GGNNCC	2 cut(s)	28, 227
PstI	CTGCAG	2 cut(s)	196, 352
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	353
RseI	CAYNNNNRTG	2 cut(s)	93, 596
SatI	GCNGC	4 cut(s)	114, 155, 192, 351
Sau3AI	GATC	6 cut(s)	178, 232, 316, 511, 628, 673
ScrFI	CCNGG	3 cut(s)	223, 293, 530
SduI	GDGCHC	1 cut(s)	414
SfcI	CTRYAG	3 cut(s)	192, 348, 354
SmiMI	CAYNNNNRTG	2 cut(s)	93, 596
SmlI	CTYRAG	2 cut(s)	40, 311
SmoI	CTYRAG	2 cut(s)	40, 311
Sse9I	AATT	7 cut(s)	299, 373, 421, 427, 474, 505, 622
SspI	AATATT	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	221, 291, 528
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	149
TasI	AATT	7 cut(s)	299, 373, 421, 427, 474, 505, 622
TfiI	GAWTC	1 cut(s)	525
TscAI	CASTG	2 cut(s)	201, 414
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	4 cut(s)	113, 154, 191, 350
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	105, 225, 549, 614
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	201, 414
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.