Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

20391313 .. 20392688

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G227500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTTCTGGGGCTGGCAGTAATGGCTCTGGCACTGGCTCTCCTTGTGGGGCATGCAAGTTTCTGAGGAGAAAGTGTGCCTCTGACTGTATCTTTGCACCTTATTTTTGCTCTGAGCAAGGGCCTGCTCGATTTGCTGCCATTCACAAAGTGTTTGGTGCTAGCAATGTGTCCAAATTGTTGTTGCATGTCCCTGTTCATGATCGTTGTGAAGCTGTTGTCACAATTGCCTATGAAGCTCAAGCAAGAATCAGAGATCCTGTTTATGGATGTGTGGCTCACATTTTTGCCCTGCAACAACAGGTACTTACCAAAAAGGTGGCATGTTTGCAAGCACAATTGATGCAAGTAAGGGCTCAACTGGCTCACCAGAGCCTTGTTGATTCAAGGAACATAGAGAGCACTCAGTGGCCAGGGAATGTGAATGGAGTCACAAACTTTCCAAATTATCCAAGTTACATGAATCCTATTTCACCTCAGAGCTCGCTTGAATCCATTGACCACAACTGCAGTGATATTGCTATGAATATGCAGGAGATACAAAGCAGCAGAGATGACTTCTCATACCAAGCTTGTTCTAAGAAGAGACCATACAATGGTGACTTGGGGGAGCTTCAGGCACTGGCCCTCAGAATGATGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

216

Amino Acids

23.55

Weight (kDa)

8.53

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	599
AdeI	CACNNNGTG	2 cut(s)	151, 408
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	266, 596
AgsI	TTSAA	2 cut(s)	387, 491
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	5 cut(s)	215, 239, 483, 572, 613
AluI	AGCT	5 cut(s)	215, 239, 483, 572, 613
Alw21I	GWGCWC	2 cut(s)	404, 485
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	122, 410, 624
ApeKI	GCWGC	2 cut(s)	137, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspS9I	GGNCC	2 cut(s)	122, 625
AsuHPI	GGTGA	3 cut(s)	359, 465, 611
AsuNHI	GCTAGC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	358, 485
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
Bbv12I	GWGCWC	2 cut(s)	404, 485
BbvI	GCAGC	2 cut(s)	124, 558
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	508
BisI	GCNGC	2 cut(s)	138, 547
BlsI	GCNGC	2 cut(s)	139, 548
Bme1390I	CCNGG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	122, 625
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	333
BmtI	GCTAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	413
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 61, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 596
Bse1I	ACTGG	3 cut(s)	40, 366, 627
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	266, 596
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	5 cut(s)	56, 105, 419, 491, 643
BseNI	ACTGG	3 cut(s)	40, 366, 627
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	124, 558
BshFI	GGCC	3 cut(s)	124, 412, 626
BsiHKAI	GWGCWC	2 cut(s)	404, 485
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	266, 596
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	124, 412, 626
Bso31I	GGTCTC	1 cut(s)	580
Bsp1286I	GDGCHC	3 cut(s)	358, 404, 485
Bsp143I	GATC	2 cut(s)	202, 256
BspANI	GGCC	3 cut(s)	124, 412, 626
BspCNI	CTCAG	5 cut(s)	57, 106, 418, 490, 642
BspHI	TCATGA	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	512
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	40, 366, 627
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	2 cut(s)	202, 256
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	578
BstC8I	GCNNGC	6 cut(s)	16, 55, 126, 163, 333, 485
BstDEI	CTNAG	6 cut(s)	65, 114, 405, 477, 579, 629
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	205, 259
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	2 cut(s)	202, 256
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 24, 134, 236, 362
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	3 cut(s)	57, 191, 327
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	124, 558
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	124, 412, 626
BtsCI	GGATG	1 cut(s)	275
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	4 cut(s)	33, 413, 517, 620
Cac8I	GCNNGC	6 cut(s)	16, 55, 126, 163, 333, 485
CaiI	CAGNNNCTG	1 cut(s)	622
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	122, 625
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	5 cut(s)	54, 188, 200, 324, 460
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	6 cut(s)	65, 114, 405, 477, 579, 629
DpnI	GATC	2 cut(s)	204, 258
DpnII	GATC	2 cut(s)	202, 256
DraIII	CACNNNGTG	2 cut(s)	151, 408
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	483
Eco24I	GRGCYC	2 cut(s)	358, 485
Eco31I	GGTCTC	1 cut(s)	580
Eco53kI	GAGCTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	2 cut(s)	358, 485
FaeI	CATG	5 cut(s)	57, 191, 203, 327, 463
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	53, 187, 199, 323, 459
Fnu4HI	GCNGC	2 cut(s)	138, 547
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	2 cut(s)	358, 485
Fsp4HI	GCNGC	2 cut(s)	138, 547
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	138, 547
HaeIII	GGCC	3 cut(s)	124, 412, 626
Hin1II	CATG	5 cut(s)	57, 191, 203, 327, 463
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	5 cut(s)	249, 383, 429, 463, 491
HphI	GGTGA	3 cut(s)	359, 465, 611
Hpy188I	TCNGA	6 cut(s)	66, 85, 115, 254, 480, 632
Hpy188III	TCNNGA	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	8 cut(s)	57, 98, 187, 295, 331, 346, 510, 532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 24, 134, 236, 362
HpyF3I	CTNAG	6 cut(s)	65, 114, 405, 477, 579, 629
Hsp92II	CATG	5 cut(s)	57, 191, 203, 327, 463
Kzo9I	GATC	2 cut(s)	202, 256
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	2 cut(s)	124, 558
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	4 cut(s)	220, 430, 455, 599
MalI	GATC	2 cut(s)	204, 258
MboI	GATC	2 cut(s)	202, 256
MboII	GAAGA	1 cut(s)	595
MfeI	CAATTG	2 cut(s)	225, 338
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	358, 404, 485
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	4 cut(s)	176, 225, 338, 445
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	438
MnlI	CCTC	4 cut(s)	60, 91, 486, 638
Mox20I	TGGCCA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	412
Msp20I	TGGCCA	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	414
MunI	CAATTG	2 cut(s)	225, 338
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	5 cut(s)	11, 24, 134, 236, 362
NdeII	GATC	2 cut(s)	202, 256
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	5 cut(s)	57, 191, 203, 327, 463
NmuCI	GTSAC	3 cut(s)	220, 430, 599
NspI	RCATGY	3 cut(s)	57, 191, 327
PaeI	GCATGC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	249, 383, 463, 491
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	139, 548
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	122, 625
PstI	CTGCAG	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	485
SatI	GCNGC	2 cut(s)	138, 547
Sau3AI	GATC	2 cut(s)	202, 256
Sau96I	GGNCC	2 cut(s)	122, 625
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	3 cut(s)	358, 404, 485
SetI	ASST	9 cut(s)	103, 217, 241, 306, 321, 478, 485, 574, 615
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	176, 225, 338, 445
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	130
TasI	AATT	4 cut(s)	176, 225, 338, 445
TfiI	GAWTC	4 cut(s)	249, 383, 463, 491
TscAI	CASTG	4 cut(s)	40, 413, 517, 627
TseFI	GTSAC	3 cut(s)	220, 430, 599
TseI	GCWGC	2 cut(s)	137, 546
Tsp45I	GTSAC	3 cut(s)	220, 430, 599
TspDTI	ATGAA	4 cut(s)	188, 249, 476, 539
TspRI	CASTG	4 cut(s)	40, 413, 517, 627
Van91I	CCANNNNNTGG	1 cut(s)	596
XceI	RCATGY	3 cut(s)	57, 191, 327
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.