Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

21631061 .. 21632042

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTTCTGGGGGTGGTGCTGGCAGCGCTGGGACTGGCACTGGGTCTCCTTGTGGGGCATGCAAGTTTCTGAGGAGAAAGTGTGCTTCTGATTGCATATTTGCACCTTATTTTTGCTCCGAGCAAGGACCTGCTCGTTTTGCTGCCATTCACAAAGTGTTTGGCGCCAGCAATGTGTCCAAGTTGTTGTTGCATGTTCCTGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCCTATGAAGCTCAAGCAAGAATTCGGGACCCCGTTTATGGATGCGTGGCTCACATTTTTTCCTTGCAACAACAGGTGGCATGTTTGCAAGCACAATTGATGCAAGTAAAGGCTCAACTGGCTCACCAAAACCTCATTGATTCAAGGAACATGGAGAGTACTCAGTGGCAGGGGAATGTGAATGGATCAGTCTCAAGCTTTCCAAGTTATCCGAGCTACGTGAATCCTATTTCACCTCAGAGCTCGCTGGACTCCATGGACCCCAACAGTGATATTGCCATGCATATGCAGGAGATTCAAAGCAGCAGAGAGGAGTTCTCGTATCAAGGTTGTTCTAAAAAGAGACAATATAATGGTGACTTGGGAGAGCTTCAAGCTTTGGCCCTCAGAATGATGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

213

Amino Acids

23.03

Weight (kDa)

8.08

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	17 - 115	3.3e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	394
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	378, 533, 608
AluBI	AGCT	7 cut(s)	221, 245, 432, 450, 477, 604, 611
AluI	AGCT	7 cut(s)	221, 245, 432, 450, 477, 604, 611
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	3 cut(s)	51, 430, 571
AlwI	GGATC	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	24, 143, 537
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	29, 167
AspS9I	GGNCC	4 cut(s)	128, 262, 493, 616
AsuHPI	GGTGA	3 cut(s)	350, 459, 602
AvaII	GGWCC	3 cut(s)	128, 262, 493
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	36, 130, 549
BcoDI	GTCTC	3 cut(s)	51, 430, 571
BfoI	RGCGCY	2 cut(s)	30, 168
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	25, 144, 538
BlsI	GCNGC	3 cut(s)	26, 145, 539
BmcAI	AGTACT	1 cut(s)	394
Bme18I	GGWCC	3 cut(s)	128, 262, 493
BmgT120I	GGNCC	4 cut(s)	128, 262, 493, 616
BmiI	GGNNCC	4 cut(s)	166, 263, 264, 495
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	266, 324
BmuI	ACTGGG	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpuEI	CTTGAG	2 cut(s)	231, 412
BsaAI	YACGTR	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	489
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 67, 97, 539, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	40, 46, 357
Bse3DI	GCAATG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	4 cut(s)	62, 410, 485, 634
BseNI	ACTGG	3 cut(s)	40, 46, 357
BseRI	GAGGAG	2 cut(s)	88, 560
BseXI	GCAGC	3 cut(s)	36, 130, 549
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	479
BslFI	GGGAC	2 cut(s)	46, 275
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	3 cut(s)	51, 430, 571
BsmFI	GGGAC	2 cut(s)	46, 275
BsnI	GGCC	1 cut(s)	617
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	2 cut(s)	208, 419
Bsp19I	CCATGG	1 cut(s)	489
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	4 cut(s)	63, 409, 484, 633
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	4 cut(s)	166, 263, 264, 495
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	40, 46, 357
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	208, 419
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	5 cut(s)	22, 61, 169, 324, 479
BstDEI	CTNAG	4 cut(s)	71, 396, 471, 620
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	281
BstH2I	RGCGCY	2 cut(s)	30, 168
BstHHI	GCGC	2 cut(s)	29, 167
BstKTI	GATC	2 cut(s)	211, 422
BstMAI	GTCTC	3 cut(s)	51, 430, 571
BstMBI	GATC	2 cut(s)	208, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 140, 242, 353
BstNSI	RCATGY	3 cut(s)	63, 197, 318
BstV1I	GCAGC	3 cut(s)	36, 130, 549
BsuRI	GGCC	1 cut(s)	617
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	3 cut(s)	39, 404, 508
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	5 cut(s)	22, 61, 169, 324, 479
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	29, 167
Cfr13I	GGNCC	4 cut(s)	128, 262, 493, 616
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	7 cut(s)	60, 194, 206, 315, 385, 490, 514
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	4 cut(s)	71, 396, 471, 620
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	2 cut(s)	210, 421
DpnII	GATC	2 cut(s)	208, 419
DraIII	CACNNNGTG	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	3 cut(s)	128, 262, 493
Eco47III	AGCGCT	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	477
EcoO109I	RGGNCCY	2 cut(s)	128, 262
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	7 cut(s)	63, 197, 209, 318, 388, 493, 517
FaqI	GGGAC	2 cut(s)	46, 275
FatI	CATG	7 cut(s)	59, 193, 205, 314, 384, 489, 513
FauNDI	CATATG	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	25, 144, 538
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	3 cut(s)	25, 144, 538
GlaI	GCGC	2 cut(s)	28, 166
GluI	GCNGC	3 cut(s)	25, 144, 538
GsaI	CCCAGC	1 cut(s)	33
HaeII	RGCGCY	2 cut(s)	30, 168
HaeIII	GGCC	1 cut(s)	617
HhaI	GCGC	2 cut(s)	29, 167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	7 cut(s)	63, 197, 209, 318, 388, 493, 517
Hin6I	GCGC	2 cut(s)	27, 165
HinP1I	GCGC	2 cut(s)	27, 165
HindIII	AAGCTT	2 cut(s)	430, 609
HinfI	GANTC	4 cut(s)	374, 457, 485, 529
HphI	GGTGA	3 cut(s)	350, 459, 602
Hpy188I	TCNGA	6 cut(s)	72, 91, 121, 447, 474, 623
Hpy188III	TCNNGA	2 cut(s)	206, 260
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	9 cut(s)	63, 96, 104, 193, 301, 322, 337, 517, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 140, 242, 353
HpyF3I	CTNAG	4 cut(s)	71, 396, 471, 620
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	63, 197, 209, 318, 388, 493, 517
HspAI	GCGC	2 cut(s)	27, 165
KasI	GGCGCC	1 cut(s)	164
KflI	GGGWCCC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	208, 419
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	36, 130, 549
LweI	GCATC	2 cut(s)	266, 324
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	226, 590
MalI	GATC	2 cut(s)	210, 421
MboI	GATC	2 cut(s)	208, 419
MfeI	CAATTG	2 cut(s)	231, 329
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	3 cut(s)	231, 255, 329
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	5 cut(s)	66, 377, 480, 538, 629
Mph1103I	ATGCAT	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	518
MunI	CAATTG	2 cut(s)	231, 329
MwoI	GCNNNNNNNGC	4 cut(s)	26, 140, 242, 353
NarI	GGCGCC	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	489
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	2 cut(s)	208, 419
NlaIII	CATG	7 cut(s)	63, 197, 209, 318, 388, 493, 517
NlaIV	GGNNCC	4 cut(s)	166, 263, 264, 495
NmuCI	GTSAC	2 cut(s)	226, 590
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	3 cut(s)	63, 197, 318
PaeI	GCATGC	1 cut(s)	63
PagI	TCATGA	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	374, 457, 529
PkrI	GCNGC	3 cut(s)	26, 145, 539
PleI	GAGTC	1 cut(s)	479
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	479
Ppu21I	YACGTR	1 cut(s)	454
PpuMI	RGGWCCY	2 cut(s)	128, 262
Psp124BI	GAGCTC	1 cut(s)	479
Psp5II	RGGWCCY	2 cut(s)	128, 262
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	4 cut(s)	166, 263, 264, 495
PspPI	GGNCC	4 cut(s)	128, 262, 493, 616
PspPPI	RGGWCCY	2 cut(s)	128, 262
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	479
SatI	GCNGC	3 cut(s)	25, 144, 538
Sau3AI	GATC	2 cut(s)	208, 419
Sau96I	GGNCC	4 cut(s)	128, 262, 493, 616
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	2 cut(s)	266, 324
SfoI	GGCGCC	1 cut(s)	166
SinI	GGWCC	3 cut(s)	128, 262, 493
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	246, 427
SmoI	CTYRAG	2 cut(s)	246, 427
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	3 cut(s)	231, 255, 329
SspDI	GGCGCC	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	1 cut(s)	456
TasI	AATT	3 cut(s)	231, 255, 329
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	374, 457, 529
TscAI	CASTG	3 cut(s)	46, 404, 508
TseFI	GTSAC	2 cut(s)	226, 590
TseI	GCWGC	3 cut(s)	24, 143, 537
Tsp45I	GTSAC	2 cut(s)	226, 590
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	3 cut(s)	46, 404, 508
VpaK11BI	GGWCC	3 cut(s)	128, 262, 493
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	3 cut(s)	63, 197, 318
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.