Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

32834254 .. 32835693

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1200900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTCTGGGGGTGCTGGCAGCGCTGGGACTGGCACTGGGTCTCCTTGTGGGGCATGCAAGTTTCTGAGGAGAAAGTGTGCTTCTGATTGCATATTTGCACCTTATTTTTGCTCCGAGCAAGGACCTGCTCGTTTTGCTGCCATTCACAAAGTGTTTGGCGCCAGCAATGTGTCCAAGTTATTGTTGCATGTTCCTGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCCTATGAAGCTCAAGCAAGAATTCGAGACCCCGTTTATGGATGCGTGGCTCACATTTTTTCCTTGCAACAACAGGTGGCATGTTTGCAAGCACAATTGATGCAAGTAAAGGCTCAACTGGCTCACCAAAACCTCGTTGATTCAAGGAACATGGAGAGTACTCAGTGGCAGGGGAATGTGAATGGATCAGTCACAAGCATTCCAAGTTATCCGAGCTACGTGAATCCTATTTCACCTCGGAGCTCGCTGGACTCCATGGACCCCAACAGTGATATTGCCATGAATATGCAGGAGATTCAAAGCAGCAGAGAGGAGTTCTCGTACCAAGGTTGTTCTAAAAAGAGACCATATAATGGTGACTTGGGAGAGCTTCAAGCCTTGGCCCTCAGAATGATGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

212

Amino Acids

22.91

Weight (kDa)

8.38

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	16 - 114	3.3e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	584
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	391, 554
AfeI	AGCGCT	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	269, 584
AgsI	TTSAA	3 cut(s)	375, 530, 605
AluBI	AGCT	5 cut(s)	218, 242, 447, 474, 601
AluI	AGCT	5 cut(s)	218, 242, 447, 474, 601
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	3 cut(s)	48, 252, 568
AlwI	GGATC	1 cut(s)	424
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	3 cut(s)	21, 140, 534
ApoI	RAATTY	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	26, 164
AspS9I	GGNCC	3 cut(s)	125, 490, 613
AsuHPI	GGTGA	3 cut(s)	347, 456, 599
AvaII	GGWCC	2 cut(s)	125, 490
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	3 cut(s)	33, 127, 546
BcoDI	GTCTC	3 cut(s)	48, 252, 568
BfoI	RGCGCY	2 cut(s)	27, 165
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	22, 141, 535
BlsI	GCNGC	3 cut(s)	23, 142, 536
BmcAI	AGTACT	1 cut(s)	391
Bme18I	GGWCC	2 cut(s)	125, 490
BmgT120I	GGNCC	3 cut(s)	125, 490, 613
BmiI	GGNNCC	2 cut(s)	163, 492
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	263, 321
BmuI	ACTGGG	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpuEI	CTTGAG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	3 cut(s)	48, 252, 568
BsaJI	CCNNGG	4 cut(s)	467, 486, 556, 609
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 64, 94, 536, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 584
Bse1I	ACTGG	3 cut(s)	37, 43, 354
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	4 cut(s)	467, 486, 556, 609
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	269, 584
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	59, 407, 631
BseNI	ACTGG	3 cut(s)	37, 43, 354
BseRI	GAGGAG	2 cut(s)	85, 557
BseXI	GCAGC	3 cut(s)	33, 127, 546
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	269, 584
BsmAI	GTCTC	3 cut(s)	48, 252, 568
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	614
Bso31I	GGTCTC	3 cut(s)	48, 252, 568
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	205, 416
Bsp19I	CCATGG	1 cut(s)	486
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	3 cut(s)	60, 406, 630
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	163, 492
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	3 cut(s)	48, 252, 568
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	37, 43, 354
BssECI	CCNNGG	4 cut(s)	467, 486, 556, 609
BssMI	GATC	2 cut(s)	205, 416
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	3 cut(s)	486, 556, 609
Bst4CI	ACNGT	1 cut(s)	500
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	5 cut(s)	19, 58, 166, 321, 476
BstDEI	CTNAG	3 cut(s)	68, 393, 617
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	278
BstH2I	RGCGCY	2 cut(s)	27, 165
BstHHI	GCGC	2 cut(s)	26, 164
BstKTI	GATC	2 cut(s)	208, 419
BstMAI	GTCTC	3 cut(s)	48, 252, 568
BstMBI	GATC	2 cut(s)	205, 416
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 137, 239, 350
BstNSI	RCATGY	3 cut(s)	60, 194, 315
BstV1I	GCAGC	3 cut(s)	33, 127, 546
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	36, 401, 505
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	5 cut(s)	19, 58, 166, 321, 476
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	26, 164
Cfr13I	GGNCC	3 cut(s)	125, 490, 613
Csp6I	GTAC	2 cut(s)	390, 553
CviAII	CATG	7 cut(s)	57, 191, 203, 312, 382, 487, 511
CviQI	GTAC	2 cut(s)	390, 553
DdeI	CTNAG	3 cut(s)	68, 393, 617
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	2 cut(s)	207, 418
DpnII	GATC	2 cut(s)	205, 416
DraIII	CACNNNGTG	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	3 cut(s)	486, 556, 609
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	3 cut(s)	48, 252, 568
Eco47I	GGWCC	2 cut(s)	125, 490
Eco47III	AGCGCT	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	486, 556, 609
EcoT38I	GRGCYC	1 cut(s)	476
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	3 cut(s)	486, 556, 609
FaeI	CATG	7 cut(s)	60, 194, 206, 315, 385, 490, 514
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	7 cut(s)	56, 190, 202, 311, 381, 486, 510
Fnu4HI	GCNGC	3 cut(s)	22, 141, 535
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	22, 141, 535
GlaI	GCGC	2 cut(s)	25, 163
GluI	GCNGC	3 cut(s)	22, 141, 535
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	2 cut(s)	27, 165
HaeIII	GGCC	1 cut(s)	614
HhaI	GCGC	2 cut(s)	26, 164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	7 cut(s)	60, 194, 206, 315, 385, 490, 514
Hin6I	GCGC	2 cut(s)	24, 162
HinP1I	GCGC	2 cut(s)	24, 162
HinfI	GANTC	4 cut(s)	371, 454, 482, 526
HphI	GGTGA	3 cut(s)	347, 456, 599
Hpy188I	TCNGA	6 cut(s)	69, 88, 118, 444, 471, 620
Hpy188III	TCNNGA	2 cut(s)	203, 257
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	8 cut(s)	60, 93, 101, 190, 298, 319, 334, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 137, 239, 350
HpyF3I	CTNAG	3 cut(s)	68, 393, 617
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	7 cut(s)	60, 194, 206, 315, 385, 490, 514
HspAI	GCGC	2 cut(s)	24, 162
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	205, 416
LmnI	GCTCC	2 cut(s)	119, 471
Lsp1109I	GCAGC	3 cut(s)	33, 127, 546
LweI	GCATC	2 cut(s)	263, 321
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	3 cut(s)	223, 421, 587
MalI	GATC	2 cut(s)	207, 418
MboI	GATC	2 cut(s)	205, 416
MfeI	CAATTG	2 cut(s)	228, 326
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	3 cut(s)	228, 252, 326
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	5 cut(s)	63, 374, 477, 535, 626
MslI	CAYNNNNRTG	1 cut(s)	515
MunI	CAATTG	2 cut(s)	228, 326
Mva1269I	GAATGC	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	23, 137, 239, 350
NarI	GGCGCC	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	205, 416
NlaIII	CATG	7 cut(s)	60, 194, 206, 315, 385, 490, 514
NlaIV	GGNNCC	2 cut(s)	163, 492
NmuCI	GTSAC	3 cut(s)	223, 421, 587
NspI	RCATGY	3 cut(s)	60, 194, 315
PaeI	GCATGC	1 cut(s)	60
PagI	TCATGA	1 cut(s)	202
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	371, 454, 526
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	23, 142, 536
PleI	GAGTC	1 cut(s)	476
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	163, 492
PspPI	GGNCC	3 cut(s)	125, 490, 613
PspPPI	RGGWCCY	1 cut(s)	125
RsaI	GTAC	2 cut(s)	391, 554
RsaNI	GTAC	2 cut(s)	390, 553
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	476
SatI	GCNGC	3 cut(s)	22, 141, 535
Sau3AI	GATC	2 cut(s)	205, 416
Sau96I	GGNCC	3 cut(s)	125, 490, 613
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	476
SfaNI	GCATC	2 cut(s)	263, 321
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	125, 490
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	228, 252, 326
SspDI	GGCGCC	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	476
StyI	CCWWGG	3 cut(s)	486, 556, 609
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	228, 252, 326
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	371, 454, 526
TscAI	CASTG	3 cut(s)	43, 401, 505
TseFI	GTSAC	3 cut(s)	223, 421, 587
TseI	GCWGC	3 cut(s)	21, 140, 534
Tsp45I	GTSAC	3 cut(s)	223, 421, 587
TspDTI	ATGAA	2 cut(s)	252, 527
TspRI	CASTG	3 cut(s)	43, 401, 505
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	125, 490
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	3 cut(s)	60, 194, 315
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.