Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

50945627 .. 50946764

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG323300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTCTGGGAGTACTGGTAGCAGTGGCACTACTGGAACTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGAGGAGGAAGTGCGCCTCTGATTGCATATTTGCTCCTTACTTTTGCTCCGAACAAGGGCCGGCTAGATTTGCTGCCATTCACAAAGTGTTTGGGGCTAGCAATGTCTCCAAGCTGTTACTTCATGTCCCTGTCCATGATCGATGTGAAGCTGTTGTCACAATTGCCTATGAAGCTCAAGCAAGGATTCGAGACCCCGTTTATGGTTGTGTTGCTCACATTTTTGCCTTGCAGCAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGTGAAGGCACAAGTGGCTCATCAAAACCTTATGAATTCAAGGACCATGGAGAGTCAATGGCAGGGGAATGTGAATGGAGTCACAAACTTTCCAAGTTATCCAAGTTACATGAACCCTATTTCTCCTCAGAGCTCGCTGGATTCCATTGACCACAGCAGCAATGATGTTATGAATTATATGCATGAGACACAGAGCAACAGCAGATCAGATGAGTTTTCATTCCAAGCTTGTTCTAAGAAGAGAGCATACAACAGTACTGACTTGGGTGAGCTTCAAGCATTGGCCCTCAGAATGATGAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

214

Amino Acids

23.46

Weight (kDa)

8.38

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	17 - 115	4.1e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	2 cut(s)	16, 595
AfiI	CCNNNNNNNGG	2 cut(s)	126, 272
AgsI	TTSAA	2 cut(s)	378, 614
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	6 cut(s)	184, 221, 245, 471, 566, 610
AluI	AGCT	6 cut(s)	184, 221, 245, 471, 566, 610
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	181, 255, 518
AoxI	GGCC	2 cut(s)	128, 621
ApeKI	GCWGC	3 cut(s)	143, 301, 495
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	128, 381, 622
AsuHPI	GGTGA	1 cut(s)	617
AsuNHI	GCTAGC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	569, 601
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	130, 313, 507
BcoDI	GTCTC	3 cut(s)	181, 255, 518
BfaI	CTAG	2 cut(s)	135, 168
BisI	GCNGC	3 cut(s)	144, 302, 496
BlsI	GCNGC	3 cut(s)	145, 303, 497
BmcAI	AGTACT	2 cut(s)	16, 595
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	128, 381, 622
BmsI	GCATC	1 cut(s)	324
BmtI	GCTAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	384
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 34, 61, 101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 272
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	3 cut(s)	22, 40, 46
Bse3DI	GCAATG	2 cut(s)	178, 505
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	126, 272
BseMI	GCAATG	2 cut(s)	178, 505
BseMII	CTCAG	3 cut(s)	62, 479, 640
BseNI	ACTGG	3 cut(s)	22, 40, 46
BseRI	GAGGAG	2 cut(s)	88, 453
BseXI	GCAGC	3 cut(s)	130, 313, 507
BshFI	GGCC	2 cut(s)	130, 623
BshVI	ATCGAT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	126, 272
BsmAI	GTCTC	3 cut(s)	181, 255, 518
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	130, 623
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	208, 542
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	2 cut(s)	130, 623
BspCNI	CTCAG	3 cut(s)	63, 478, 639
BspDI	ATCGAT	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	178, 505
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	22, 40, 46
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	208, 542
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	5 cut(s)	61, 132, 169, 316, 473
BstDEI	CTNAG	4 cut(s)	71, 465, 573, 626
BstDSI	CCRYGG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	211, 545
BstMAI	GTCTC	3 cut(s)	181, 255, 518
BstMBI	GATC	2 cut(s)	208, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 242, 353
BstNSI	RCATGY	2 cut(s)	63, 318
BstV1I	GCAGC	3 cut(s)	130, 313, 507
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	130, 623
BsuTUI	ATCGAT	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	5 cut(s)	61, 132, 169, 316, 473
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	128, 381, 622
ClaI	ATCGAT	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	15, 594
CviAII	CATG	7 cut(s)	60, 194, 206, 315, 385, 448, 521
CviQI	GTAC	2 cut(s)	15, 594
DdeI	CTNAG	4 cut(s)	71, 465, 573, 626
DpnI	GATC	2 cut(s)	210, 544
DpnII	GATC	2 cut(s)	208, 542
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 524
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	7 cut(s)	59, 193, 205, 314, 384, 447, 520
Fnu4HI	GCNGC	3 cut(s)	144, 302, 496
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	144, 302, 496
FspBI	CTAG	2 cut(s)	135, 168
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	144, 302, 496
HaeIII	GGCC	2 cut(s)	130, 623
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 524
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	4 cut(s)	256, 391, 417, 479
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	617
Hpy188I	TCNGA	6 cut(s)	72, 91, 121, 468, 547, 629
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	5 cut(s)	63, 96, 301, 337, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 242, 353
HpyF3I	CTNAG	4 cut(s)	71, 465, 573, 626
Hsp92II	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 524
HspAI	GCGC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	208, 542
LmnI	GCTCC	3 cut(s)	56, 109, 122
LpnPI	CCDG	8 cut(s)	3, 21, 27, 144, 213, 293, 386, 461
Lsp1109I	GCAGC	3 cut(s)	130, 313, 507
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	135, 168
MaeIII	GTNAC	4 cut(s)	186, 226, 418, 443
MalI	GATC	2 cut(s)	210, 544
MboI	GATC	2 cut(s)	208, 542
MboII	GAAGA	1 cut(s)	589
MfeI	CAATTG	2 cut(s)	231, 329
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	231, 329, 373, 511
MlyI	GAGTC	2 cut(s)	400, 426
MnlI	CCTC	6 cut(s)	66, 69, 97, 474, 630, 635
Mph1103I	ATGCAT	1 cut(s)	522
MroNI	GCCGGC	1 cut(s)	130
MspI	CCGG	1 cut(s)	131
MunI	CAATTG	2 cut(s)	231, 329
MwoI	GCNNNNNNNGC	3 cut(s)	140, 242, 353
NaeI	GCCGGC	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	208, 542
NgoMIV	GCCGGC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 524
NmuCI	GTSAC	2 cut(s)	226, 418
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	2 cut(s)	63, 318
PaeI	GCATGC	2 cut(s)	63, 318
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	256, 479
PkrI	GCNGC	3 cut(s)	145, 303, 497
PleI	GAGTC	2 cut(s)	399, 425
PpsI	GAGTC	2 cut(s)	399, 425
Psp124BI	GAGCTC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	128, 381, 622
RsaI	GTAC	2 cut(s)	16, 595
RsaNI	GTAC	2 cut(s)	15, 594
SacI	GAGCTC	1 cut(s)	473
SatI	GCNGC	3 cut(s)	144, 302, 496
Sau3AI	GATC	2 cut(s)	208, 542
Sau96I	GGNCC	3 cut(s)	128, 381, 622
ScaI	AGTACT	2 cut(s)	16, 595
SchI	GAGTC	2 cut(s)	400, 426
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	186, 223, 247, 312, 369, 473, 568, 612
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SphI	GCATGC	2 cut(s)	63, 318
Sse9I	AATT	4 cut(s)	231, 329, 373, 511
SspMI	CTAG	2 cut(s)	135, 168
SstI	GAGCTC	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	2 cut(s)	211, 259
TasI	AATT	4 cut(s)	231, 329, 373, 511
TatI	WGTACW	2 cut(s)	14, 593
TfiI	GAWTC	2 cut(s)	256, 479
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	226, 418
TseI	GCWGC	3 cut(s)	143, 301, 495
Tsp45I	GTSAC	2 cut(s)	226, 418
TspDTI	ATGAA	6 cut(s)	182, 255, 386, 464, 524, 546
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	2 cut(s)	63, 318
XspI	CTAG	2 cut(s)	135, 168
ZrmI	AGTACT	2 cut(s)	16, 595
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.