Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

51981841 .. 51982365

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGCTCTCAATCCCCCCACTTTCTTCTCCATTTACCCCTAACTTCATTTGTGCAGCATTTCCTAGTGCACCCGTCTACCATGGCTTCTGGGAGTACTGGTAGCAGTGGCACTACTGGAACTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGAGGAGGAAGTGCGCCTCTGATTGCATATTTGCTCCTTACTTTTGCTCCGAACAAGGGCCGGCTAGATTTGCTGCCATTCACAAAGTGTTTGGGGCTAGCAATGTCTCCAAGCTGTTACTTCATGTCCCTGTCCATGATCGATGTGAAGCTGTTGTCACAATTGCCTATGAAGCTCAAGCAAGGATTCGAGACCCCGTTTATGGTTGTGTTGCTCACATTTTTGCCTTGCAGCAACAGGTATTTGTTCTTGTTCTTGTTCTTGCAAAGTATAAAACCCTATTTTCGCGAAATTGTTTTCTTATCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

153

Amino Acids

16.65

Weight (kDa)

9.08

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	44 - 132	1.1e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	439
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	207, 353
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
AluBI	AGCT	3 cut(s)	265, 302, 326
AluI	AGCT	3 cut(s)	265, 302, 326
Alw21I	GWGCWC	2 cut(s)	8, 72
Alw26I	GTCTC	2 cut(s)	262, 336
Alw44I	GTGCAC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	3 cut(s)	55, 224, 382
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	209
AsuNHI	GCTAGC	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	8, 72
BbvI	GCAGC	3 cut(s)	67, 211, 394
BcoDI	GTCTC	2 cut(s)	262, 336
BfaI	CTAG	3 cut(s)	65, 216, 249
BisI	GCNGC	3 cut(s)	56, 225, 383
BlsI	GCNGC	3 cut(s)	57, 226, 384
BmcAI	AGTACT	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	209
BmtI	GCTAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	6 cut(s)	85, 112, 115, 142, 182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 353
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	103, 121, 127
Bse3DI	GCAATG	1 cut(s)	259
BseCI	ATCGAT	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	207, 353
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	3 cut(s)	103, 121, 127
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	67, 211, 394
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	8, 72
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	207, 353
BsmAI	GTCTC	2 cut(s)	262, 336
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	8, 72
Bsp143I	GATC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	81
Bsp68I	TCGCGA	1 cut(s)	439
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	439
BspOI	GCTAGC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	103, 121, 127
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	142, 213, 250
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	262, 336
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 323
BstNSI	RCATGY	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	3 cut(s)	67, 211, 394
Bsu15I	ATCGAT	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	211
BsuTUI	ATCGAT	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
BtuMI	TCGCGA	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	142, 213, 250
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	4 cut(s)	82, 141, 275, 287
CviJI	RGCY	8 cut(s)	86, 126, 211, 215, 248, 265, 302, 326
CviKI_1	RGCY	8 cut(s)	86, 126, 211, 215, 248, 265, 302, 326
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	4 cut(s)	85, 144, 278, 290
FaiI	YATR	8 cut(s)	83, 142, 179, 276, 288, 321, 354, 423
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	81, 140, 274, 286
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	56, 225, 383
Fsp4HI	GCNGC	3 cut(s)	56, 225, 383
FspBI	CTAG	3 cut(s)	65, 216, 249
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	56, 225, 383
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	85, 144, 278, 290
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	70, 78
Hpy188I	TCNGA	4 cut(s)	153, 172, 202, 458
Hpy188III	TCNNGA	2 cut(s)	341, 438
Hpy8I	GTNNAC	2 cut(s)	70, 78
HpyCH4V	TGCA	6 cut(s)	55, 70, 144, 177, 382, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 323
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	85, 144, 278, 290
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	137, 190, 203
LpnPI	CCDG	7 cut(s)	75, 84, 102, 108, 225, 294, 374
Lsp1109I	GCAGC	3 cut(s)	67, 211, 394
MaeI	CTAG	3 cut(s)	65, 216, 249
MaeIII	GTNAC	2 cut(s)	267, 307
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	8, 72
MluCI	AATT	2 cut(s)	312, 442
MnlI	CCTC	3 cut(s)	147, 150, 178
MroNI	GCCGGC	1 cut(s)	211
MspI	CCGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	221, 323
NaeI	GCCGGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	289
NgoMIV	GCCGGC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	85, 144, 278, 290
NmuCI	GTSAC	1 cut(s)	307
NruI	TCGCGA	1 cut(s)	439
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	57, 226, 384
PspPI	GGNCC	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	439
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SatI	GCNGC	3 cut(s)	56, 225, 383
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	8, 72
SetI	ASST	4 cut(s)	267, 304, 328, 393
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	312, 442
SspMI	CTAG	3 cut(s)	65, 216, 249
StyI	CCWWGG	1 cut(s)	81
TaqI	TCGA	2 cut(s)	292, 340
TasI	AATT	2 cut(s)	312, 442
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	337
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	55, 224, 382
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	36, 263, 336
TspRI	CASTG	1 cut(s)	112
VneI	GTGCAC	1 cut(s)	68
XceI	RCATGY	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	3 cut(s)	65, 216, 249
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.