Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

19417609 .. 19418602

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTTCTGGGGGTGCTGGCAGCGCTGGTATTGGCACTGGATCTCCTTGTGGGGCATGCAAGTTTCTGAGGAGAAAGTGTGCACCTGATTGCATATTTGCACCTTATTTTTGCTCCGAGCAAGGACCTGCTCGTTTTGCTGCCATTCACAAAGTGTTTGGCGCCAGCAATGTGTCCAAGTTGTTGTTGCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTCACAATTGCGTACGAAGCTCAAGCAAGAATTCGAGACCCCGTTTATGGATGCGTGGGTCACATTTTTGCCTTGCAACAACAGGTGGCATGTTTGCAAGCACAATTGATGCAAGCAAAGGCTCAACTGGCTCACCAAAGCCTTGTTGATTCAAGGAACATGGAGAGTACTCAATGGCAGGGGAATGGGATTGGGAATGGATCAGTCACAAGCTTTCCGAGTTATACGAGTTACATGAATCCTATTTCACCTCAGAGCTCTCTGGACTCCATTGAGCCCAACAGTGATATTGCCATGAATATGCAGGAGATTCAAAGCAGCAGAGAGGAGTTCTCGTACCAAGTTTGTTCTAAGAAGAGACCATATAATGGTAACTTGGGGGAGCTTCAAGCTTTGGCCCTCAGAATGATGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

214

Amino Acids

23.09

Weight (kDa)

8.38

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	16 - 114	6.5e-37	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	590
AclWI	GGATC	2 cut(s)	49, 430
AcsI	RAATTY	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	3 cut(s)	236, 391, 560
AfeI	AGCGCT	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	269, 590
AgsI	TTSAA	3 cut(s)	375, 536, 611
AluBI	AGCT	6 cut(s)	218, 242, 435, 480, 607, 614
AluI	AGCT	6 cut(s)	218, 242, 435, 480, 607, 614
Alw21I	GWGCWC	2 cut(s)	85, 482
Alw26I	GTCTC	2 cut(s)	252, 574
Alw44I	GTGCAC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	49, 430
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	1 cut(s)	618
ApaLI	GTGCAC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	21, 140, 540
ApoI	RAATTY	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	26, 164
AspS9I	GGNCC	2 cut(s)	125, 619
AsuHPI	GGTGA	2 cut(s)	347, 462
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	482, 501
Bbv12I	GWGCWC	2 cut(s)	85, 482
BbvI	GCAGC	3 cut(s)	33, 127, 552
BcoDI	GTCTC	2 cut(s)	252, 574
BfoI	RGCGCY	2 cut(s)	27, 165
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	22, 141, 541
BlsI	GCNGC	3 cut(s)	23, 142, 542
BmcAI	AGTACT	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	125, 619
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	263, 321
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpuEI	CTTGAG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	252, 574
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 64, 94, 542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 590
Bse1I	ACTGG	2 cut(s)	43, 354
Bse3DI	GCAATG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	269, 590
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	59, 488, 637
BseNI	ACTGG	2 cut(s)	43, 354
BseRI	GAGGAG	2 cut(s)	85, 563
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	3 cut(s)	33, 127, 552
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	85, 482
BsiWI	CGTACG	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	269, 590
BsmAI	GTCTC	2 cut(s)	252, 574
BsnI	GGCC	1 cut(s)	620
Bso31I	GGTCTC	2 cut(s)	252, 574
Bsp1286I	GDGCHC	3 cut(s)	85, 482, 501
Bsp143I	GATC	3 cut(s)	41, 205, 422
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	3 cut(s)	60, 487, 636
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	49, 430
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	2 cut(s)	252, 574
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	43, 354
BssMI	GATC	3 cut(s)	41, 205, 422
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	5 cut(s)	19, 58, 166, 321, 336
BstDEI	CTNAG	4 cut(s)	68, 474, 573, 623
BstF5I	GGATG	1 cut(s)	278
BstH2I	RGCGCY	2 cut(s)	27, 165
BstHHI	GCGC	2 cut(s)	26, 164
BstKTI	GATC	3 cut(s)	44, 208, 425
BstMAI	GTCTC	2 cut(s)	252, 574
BstMBI	GATC	3 cut(s)	41, 205, 422
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 137, 239, 350
BstNSI	RCATGY	3 cut(s)	60, 194, 315
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	33, 127, 552
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	36, 511
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	5 cut(s)	19, 58, 166, 321, 336
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	26, 164
Cfr13I	GGNCC	2 cut(s)	125, 619
Csp6I	GTAC	3 cut(s)	235, 390, 559
CviAII	CATG	7 cut(s)	57, 191, 203, 312, 382, 457, 517
CviQI	GTAC	3 cut(s)	235, 390, 559
DdeI	CTNAG	4 cut(s)	68, 474, 573, 623
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	3 cut(s)	43, 207, 424
DpnII	GATC	3 cut(s)	41, 205, 422
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	480
Eco24I	GRGCYC	2 cut(s)	482, 501
Eco31I	GGTCTC	2 cut(s)	252, 574
Eco47I	GGWCC	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	482, 501
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaeI	CATG	7 cut(s)	60, 194, 206, 315, 385, 460, 520
FatI	CATG	7 cut(s)	56, 190, 202, 311, 381, 456, 516
Fnu4HI	GCNGC	3 cut(s)	22, 141, 541
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	2 cut(s)	482, 501
Fsp4HI	GCNGC	3 cut(s)	22, 141, 541
GlaI	GCGC	2 cut(s)	25, 163
GluI	GCNGC	3 cut(s)	22, 141, 541
HaeII	RGCGCY	2 cut(s)	27, 165
HaeIII	GGCC	1 cut(s)	620
HhaI	GCGC	2 cut(s)	26, 164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	7 cut(s)	60, 194, 206, 315, 385, 460, 520
Hin6I	GCGC	2 cut(s)	24, 162
HinP1I	GCGC	2 cut(s)	24, 162
HindIII	AAGCTT	2 cut(s)	433, 612
HinfI	GANTC	4 cut(s)	371, 460, 488, 532
HphI	GGTGA	2 cut(s)	347, 462
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	5 cut(s)	69, 118, 441, 477, 626
Hpy188III	TCNNGA	3 cut(s)	203, 257, 485
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4V	TGCA	9 cut(s)	60, 83, 93, 101, 190, 298, 319, 334, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 137, 239, 350
HpyF3I	CTNAG	4 cut(s)	68, 474, 573, 623
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	7 cut(s)	60, 194, 206, 315, 385, 460, 520
HspAI	GCGC	2 cut(s)	24, 162
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	41, 205, 422
LmnI	GCTCC	2 cut(s)	119, 604
Lsp1109I	GCAGC	3 cut(s)	33, 127, 552
LweI	GCATC	2 cut(s)	263, 321
MaeIII	GTNAC	5 cut(s)	223, 281, 427, 452, 593
MalI	GATC	3 cut(s)	43, 207, 424
MboI	GATC	3 cut(s)	41, 205, 422
MboII	GAAGA	1 cut(s)	589
MfeI	CAATTG	2 cut(s)	228, 326
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	3 cut(s)	85, 482, 501
MluCI	AATT	3 cut(s)	228, 252, 326
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	4 cut(s)	63, 483, 541, 632
MslI	CAYNNNNRTG	1 cut(s)	521
MunI	CAATTG	2 cut(s)	228, 326
MwoI	GCNNNNNNNGC	4 cut(s)	23, 137, 239, 350
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	3 cut(s)	41, 205, 422
NlaIII	CATG	7 cut(s)	60, 194, 206, 315, 385, 460, 520
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	3 cut(s)	223, 281, 427
NspI	RCATGY	3 cut(s)	60, 194, 315
PaeI	GCATGC	1 cut(s)	60
PagI	TCATGA	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	371, 460, 532
Pfl23II	CGTACG	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	23, 142, 542
PleI	GAGTC	1 cut(s)	482
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	125
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	125, 619
PspPPI	RGGWCCY	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	3 cut(s)	236, 391, 560
RsaNI	GTAC	3 cut(s)	235, 390, 559
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	1 cut(s)	482
SatI	GCNGC	3 cut(s)	22, 141, 541
Sau3AI	GATC	3 cut(s)	41, 205, 422
Sau96I	GGNCC	2 cut(s)	125, 619
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	3 cut(s)	85, 482, 501
SfaNI	GCATC	2 cut(s)	263, 321
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	228, 252, 326
SspDI	GGCGCC	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	228, 252, 326
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	371, 460, 532
TscAI	CASTG	2 cut(s)	43, 511
TseFI	GTSAC	3 cut(s)	223, 281, 427
TseI	GCWGC	3 cut(s)	21, 140, 540
Tsp45I	GTSAC	3 cut(s)	223, 281, 427
TspDTI	ATGAA	3 cut(s)	191, 473, 533
TspRI	CASTG	2 cut(s)	43, 511
Van91I	CCANNNNNTGG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	3 cut(s)	60, 194, 315
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.