Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

18134744 .. 18136551

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTTCTGGGAGTACTGGTAGCAGTGGCACTACTACTGGAACTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGAGGAGGAAGTGCGCATCTGATTGCATATTTGCTCCTTACTTTTGCTCCGAACAAGGGCCGGCTCGATTTGCTGCCATTCACAAAGTGTTTGGGGCTAGCAATGTTTCCAAGTTGTTGCTTCATGTCCCTGTCCATGATCGATGTGAAGCTGTTGTCACTATTGCCTATGAAGCTCAGGCAAGGATTCGAGACCCCGTATATGGATGTGTTGCTCACATTTTTGCCTTGCAGCAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGTGAAGGCACAAGTGGCTCATCAAAACCTTATGGATTCAAGGACCATGGAGAGCCAATGGCAGGGGAACGTGAATGGAGTCACAAACTTCCCGAGTTATCCAAGTTACATGAACCCTATTTCTCCTCAGAGCTCGCTGGATTCCATTGACCACAGCAGCAATGATACTATCAACTATATGCAGGAGACACAAAGCAGCAGCAGATCGGAGGAGTTTCCACTCCAAGCTTGTTCTAAGAAGAGAGCATATAACAGTACTGAGTTGGGTGAGCTTCAAGAACTGGCCCTCAGAATGATGAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

216

Amino Acids

23.57

Weight (kDa)

7.57

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	18 - 116	4.2e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	2 cut(s)	16, 598
AfiI	CCNNNNNNNGG	3 cut(s)	129, 275, 403
AgsI	TTSAA	2 cut(s)	381, 617
AloI	GAACNNNNNNTCC	2 cut(s)	34, 66
AluBI	AGCT	5 cut(s)	224, 248, 474, 569, 613
AluI	AGCT	5 cut(s)	224, 248, 474, 569, 613
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	2 cut(s)	258, 521
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	131, 624
ApeKI	GCWGC	5 cut(s)	146, 304, 498, 537, 540
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	131, 384, 625
AsuHPI	GGTGA	1 cut(s)	620
AsuNHI	GCTAGC	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	5 cut(s)	133, 316, 510, 549, 552
BcoDI	GTCTC	2 cut(s)	258, 521
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	5 cut(s)	147, 305, 499, 538, 541
BlsI	GCNGC	5 cut(s)	148, 306, 500, 539, 542
BmcAI	AGTACT	2 cut(s)	16, 598
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	131, 384, 625
BmsI	GCATC	2 cut(s)	98, 327
BmtI	GCTAGC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	387
BsaXI	ACNNNNNCTCC	5 cut(s)	34, 34, 64, 104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 275, 403
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	4 cut(s)	22, 43, 49, 627
Bse3DI	GCAATG	2 cut(s)	181, 508
BseCI	ATCGAT	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	3 cut(s)	129, 275, 403
BseMI	GCAATG	2 cut(s)	181, 508
BseMII	CTCAG	5 cut(s)	65, 263, 482, 591, 643
BseNI	ACTGG	4 cut(s)	22, 43, 49, 627
BseRI	GAGGAG	3 cut(s)	91, 456, 566
BseXI	GCAGC	5 cut(s)	133, 316, 510, 549, 552
BshFI	GGCC	2 cut(s)	133, 626
BshVI	ATCGAT	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	129, 275, 403
BsmAI	GTCTC	2 cut(s)	258, 521
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	133, 626
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	211, 545
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	2 cut(s)	133, 626
BspCNI	CTCAG	5 cut(s)	66, 262, 481, 592, 642
BspDI	ATCGAT	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	181, 508
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	4 cut(s)	22, 43, 49, 627
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	2 cut(s)	211, 545
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	575
BstC8I	GCNNGC	5 cut(s)	64, 135, 172, 319, 476
BstDEI	CTNAG	6 cut(s)	74, 249, 468, 576, 600, 629
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	214, 548
BstMAI	GTCTC	2 cut(s)	258, 521
BstMBI	GATC	2 cut(s)	211, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 245, 356
BstNSI	RCATGY	2 cut(s)	66, 321
BstV1I	GCAGC	5 cut(s)	133, 316, 510, 549, 552
Bsu15I	ATCGAT	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	133, 626
BsuTUI	ATCGAT	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	5 cut(s)	64, 135, 172, 319, 476
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	131, 384, 625
ClaI	ATCGAT	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	15, 597
CviAII	CATG	6 cut(s)	63, 197, 209, 318, 388, 451
CviQI	GTAC	2 cut(s)	15, 597
DdeI	CTNAG	6 cut(s)	74, 249, 468, 576, 600, 629
DpnI	GATC	2 cut(s)	213, 547
DpnII	GATC	2 cut(s)	211, 545
DraIII	CACNNNGTG	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	6 cut(s)	66, 200, 212, 321, 391, 454
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	6 cut(s)	62, 196, 208, 317, 387, 450
Fnu4HI	GCNGC	5 cut(s)	147, 305, 499, 538, 541
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	5 cut(s)	147, 305, 499, 538, 541
FspAI	RTGCGCAY	1 cut(s)	88
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	5 cut(s)	147, 305, 499, 538, 541
HaeIII	GGCC	2 cut(s)	133, 626
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	66, 200, 212, 321, 391, 454
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	4 cut(s)	259, 377, 420, 482
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	6 cut(s)	75, 94, 124, 471, 550, 632
Hpy188III	TCNNGA	3 cut(s)	263, 433, 617
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	66, 99, 304, 340, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 245, 356
HpyF3I	CTNAG	6 cut(s)	74, 249, 468, 576, 600, 629
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	6 cut(s)	66, 200, 212, 321, 391, 454
HspAI	GCGC	1 cut(s)	87
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	211, 545
LmnI	GCTCC	3 cut(s)	59, 112, 125
Lsp1109I	GCAGC	5 cut(s)	133, 316, 510, 549, 552
LweI	GCATC	2 cut(s)	98, 327
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	3 cut(s)	229, 421, 446
MalI	GATC	2 cut(s)	213, 547
MboI	GATC	2 cut(s)	211, 545
MboII	GAAGA	1 cut(s)	592
MfeI	CAATTG	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	429
MnlI	CCTC	6 cut(s)	69, 72, 477, 544, 633, 638
MroNI	GCCGGC	1 cut(s)	133
MspI	CCGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	143, 245, 356
NaeI	GCCGGC	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	211, 545
NgoMIV	GCCGGC	1 cut(s)	133
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	6 cut(s)	66, 200, 212, 321, 391, 454
NmuCI	GTSAC	2 cut(s)	229, 421
NsbI	TGCGCA	1 cut(s)	88
NspI	RCATGY	2 cut(s)	66, 321
PaeI	GCATGC	2 cut(s)	66, 321
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	259, 377, 482
PkrI	GCNGC	5 cut(s)	148, 306, 500, 539, 542
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	476
PspPI	GGNCC	3 cut(s)	131, 384, 625
RsaI	GTAC	2 cut(s)	16, 598
RsaNI	GTAC	2 cut(s)	15, 597
SacI	GAGCTC	1 cut(s)	476
SatI	GCNGC	5 cut(s)	147, 305, 499, 538, 541
Sau3AI	GATC	2 cut(s)	211, 545
Sau96I	GGNCC	3 cut(s)	131, 384, 625
ScaI	AGTACT	2 cut(s)	16, 598
SchI	GAGTC	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	8 cut(s)	226, 250, 315, 372, 414, 476, 571, 615
SfaNI	GCATC	2 cut(s)	98, 327
SinI	GGWCC	1 cut(s)	384
SphI	GCATGC	2 cut(s)	66, 321
Sse9I	AATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	596
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	139, 214, 262
TasI	AATT	1 cut(s)	332
TatI	WGTACW	2 cut(s)	14, 596
TfiI	GAWTC	3 cut(s)	259, 377, 482
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	229, 421
TseI	GCWGC	5 cut(s)	146, 304, 498, 537, 540
Tsp45I	GTSAC	2 cut(s)	229, 421
TspDTI	ATGAA	3 cut(s)	185, 258, 467
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	384
XceI	RCATGY	2 cut(s)	66, 321
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	2 cut(s)	16, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.