Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012742

Physical Location & Seq

Genomic Coordinates Reverse (-)

28264597 .. 28265758

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1187700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCCCACTTTCCTCCTTCAACTTCATCACCGTTTCCTAGTGTGCTCGTCGCTGGCATCGGCACTGGATCTCCTTGTGGGGCATGCAAGTTTCTGAGGAGAAAGTGTGCACCTGATTGCATATTTGCACCTTATTTTTGCTCCGAGCAAGGACCTGCTCGTTTTGCTGCCATTCACAAAGTGTTTGGCGCCAGCAATGTGTCCAAGTTGTTGTTGCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTCACAATTGCATATGAAGCTCAAGCAAGAATTCGAGACCCCGTTTATGGATGCGTGGGTCACATTTTTGCCTTGCAACAACAGCTGGCATGTTTGCAAGCACAATTGATGCAAGCAAAGGCTCAACTGGCTCACCAGAGCCTTGTTGATTCAAGGAACATGGAGAGTACTCAGTGGCAGGGGAATGGGATTGGGAATGGATCAGTCACAAGCTTTCCGAGTTATACGAGTTACATGAATCCTATTTCACCTCAGAGCTCTCTGGACTCCATTGACCCCAACAGTGACATTGCCATGAATATGCAGGAGATTCAAAGCAGCAGAGAGGAGTTCTCGTACCAAGTTTGTTCTAAGAAGAGACCATATAATGGTAACTTGGGGGAGCTTCAAGCTTTGGCCTTCAGAATGATGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

223

Amino Acids

24.31

Weight (kDa)

8.38

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	25 - 123	6.9e-37	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42430
fragaria_vesca	FvH4_2g21970
malus_domestica	MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica	Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis	pycom05g18770 pycom10g16220
rosa_chinensis	RchiOBHm_Chr6g0288851
rosa_laevigata	RLG00000012362
rosa_multiflora	Rmu_sc0005314.1_g000014
rosa_roxburghii	Rroxscaffold_7G00179840
rosa_rugosa	Rorug06G0198500
rosa_samantha	Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana	Rw6G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	617
AclWI	GGATC	2 cut(s)	76, 457
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	634
AcyI	GRCGYC	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	418, 587
AfiI	CCNNNNNNNGG	2 cut(s)	296, 617
AgsI	TTSAA	4 cut(s)	21, 402, 563, 638
AluBI	AGCT	7 cut(s)	245, 269, 334, 462, 507, 634, 641
AluI	AGCT	7 cut(s)	245, 269, 334, 462, 507, 634, 641
Alw21I	GWGCWC	3 cut(s)	48, 112, 509
Alw26I	GTCTC	2 cut(s)	279, 601
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	76, 457
AoxI	GGCC	1 cut(s)	645
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	167, 567
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	21, 374, 489
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	3 cut(s)	48, 112, 509
BbvI	GCAGC	2 cut(s)	154, 579
BcoDI	GTCTC	2 cut(s)	279, 601
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	168, 568
BlsI	GCNGC	2 cut(s)	169, 569
BmcAI	AGTACT	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	3 cut(s)	66, 290, 348
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
BpuEI	CTTGAG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	2 cut(s)	279, 601
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 91, 121, 569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 617
Bse1I	ACTGG	2 cut(s)	70, 381
Bse3DI	GCAATG	2 cut(s)	202, 537
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	296, 617
BseMI	GCAATG	2 cut(s)	202, 537
BseMII	CTCAG	3 cut(s)	86, 434, 515
BseNI	ACTGG	2 cut(s)	70, 381
BseRI	GAGGAG	2 cut(s)	112, 590
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	154, 579
BshFI	GGCC	1 cut(s)	647
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	3 cut(s)	48, 112, 509
BslI	CCNNNNNNNGG	2 cut(s)	296, 617
BsmAI	GTCTC	2 cut(s)	279, 601
BsnI	GGCC	1 cut(s)	647
Bso31I	GGTCTC	2 cut(s)	279, 601
Bsp1286I	GDGCHC	3 cut(s)	48, 112, 509
Bsp143I	GATC	3 cut(s)	68, 232, 449
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	3 cut(s)	87, 433, 514
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	76, 457
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	279, 601
BsrDI	GCAATG	2 cut(s)	202, 537
BsrI	ACTGG	2 cut(s)	70, 381
BssMI	GATC	3 cut(s)	68, 232, 449
BssNI	GRCGYC	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	33, 533
Bst6I	CTCTTC	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	6 cut(s)	55, 85, 193, 336, 348, 363
BstDEI	CTNAG	4 cut(s)	95, 420, 501, 600
BstF5I	GGATG	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	71, 235, 452
BstMAI	GTCTC	2 cut(s)	279, 601
BstMBI	GATC	3 cut(s)	68, 232, 449
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 266, 331, 377
BstNSI	RCATGY	3 cut(s)	87, 221, 342
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	154, 579
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	3 cut(s)	63, 428, 538
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	6 cut(s)	55, 85, 193, 336, 348, 363
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	417, 586
CviAII	CATG	7 cut(s)	84, 218, 230, 339, 409, 484, 544
CviQI	GTAC	2 cut(s)	417, 586
DdeI	CTNAG	4 cut(s)	95, 420, 501, 600
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	3 cut(s)	70, 234, 451
DpnII	GATC	3 cut(s)	68, 232, 449
DraIII	CACNNNGTG	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Ecl136II	GAGCTC	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	2 cut(s)	279, 601
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	509
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
FaeI	CATG	7 cut(s)	87, 221, 233, 342, 412, 487, 547
FatI	CATG	7 cut(s)	83, 217, 229, 338, 408, 483, 543
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	168, 568
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	168, 568
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	168, 568
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	7 cut(s)	87, 221, 233, 342, 412, 487, 547
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HindIII	AAGCTT	2 cut(s)	460, 639
HinfI	GANTC	4 cut(s)	398, 487, 515, 559
HphI	GGTGA	3 cut(s)	21, 374, 489
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	5 cut(s)	96, 145, 468, 504, 653
Hpy188III	TCNNGA	3 cut(s)	230, 284, 512
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	27, 658
HpyCH4III	ACNGT	2 cut(s)	33, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 266, 331, 377
HpyF3I	CTNAG	4 cut(s)	95, 420, 501, 600
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	7 cut(s)	87, 221, 233, 342, 412, 487, 547
HspAI	GCGC	1 cut(s)	189
KasI	GGCGCC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	68, 232, 449
LmnI	GCTCC	2 cut(s)	146, 631
Lsp1109I	GCAGC	2 cut(s)	154, 579
LweI	GCATC	3 cut(s)	66, 290, 348
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	6 cut(s)	250, 308, 454, 479, 533, 620
MalI	GATC	3 cut(s)	70, 234, 451
MboI	GATC	3 cut(s)	68, 232, 449
MboII	GAAGA	1 cut(s)	616
MfeI	CAATTG	2 cut(s)	255, 353
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	3 cut(s)	48, 112, 509
MluCI	AATT	3 cut(s)	255, 279, 353
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	4 cut(s)	24, 90, 510, 568
MslI	CAYNNNNRTG	2 cut(s)	542, 548
MspA1I	CMGCKG	1 cut(s)	334
MunI	CAATTG	2 cut(s)	255, 353
MwoI	GCNNNNNNNGC	4 cut(s)	164, 266, 331, 377
NarI	GGCGCC	1 cut(s)	189
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	3 cut(s)	68, 232, 449
NlaIII	CATG	7 cut(s)	87, 221, 233, 342, 412, 487, 547
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	4 cut(s)	250, 308, 454, 533
NspI	RCATGY	3 cut(s)	87, 221, 342
PaeI	GCATGC	1 cut(s)	87
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	398, 487, 559
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	2 cut(s)	169, 569
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	418, 587
RsaNI	GTAC	2 cut(s)	417, 586
RseI	CAYNNNNRTG	2 cut(s)	542, 548
SacI	GAGCTC	1 cut(s)	509
SatI	GCNGC	2 cut(s)	168, 568
Sau3AI	GATC	3 cut(s)	68, 232, 449
Sau96I	GGNCC	1 cut(s)	152
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	3 cut(s)	48, 112, 509
SfaNI	GCATC	3 cut(s)	66, 290, 348
SfoI	GGCGCC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	542, 548
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	3 cut(s)	255, 279, 353
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	33, 533
TaqI	TCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	255, 279, 353
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	3 cut(s)	398, 487, 559
TscAI	CASTG	3 cut(s)	70, 428, 538
TseFI	GTSAC	4 cut(s)	250, 308, 454, 533
TseI	GCWGC	2 cut(s)	167, 567
Tsp45I	GTSAC	4 cut(s)	250, 308, 454, 533
TspDTI	ATGAA	5 cut(s)	15, 218, 279, 500, 560
TspRI	CASTG	3 cut(s)	70, 428, 538
Van91I	CCANNNNNTGG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	3 cut(s)	87, 221, 342
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.