AT2G42850

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014530
Physical Location & Seq
Forward (+)
17831408 .. 17833545
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42850.1

Sequence Viewer

Length: 1458 bp
ATGGTTTTAGAACCAAACTTCGTTCTCTCATGGGTCTTCTTATGCATAGCTGCAACAATCTCCAGCACACTTTTCTTCTTCCGCAAGAAACATCACCGATTCATAACAAAGAAGATTCAGAAGAAAAAGAAGCTTCTTCCTGGAGAAATGGGGCTTCCATGGATTGGTGAAACAATGGATTTCTACAAAGCTCAGAAAAGCAACAGAGTTTTTGAGGATTTTGTAAATCCAAGGATCATCAAACATGGGAACATCTTCAAGACAAGAATCATGGGATCACCAACAATAGTAGTCAATGGAGCTGAAGCCAATAGGCTCATATTATCCAACGAGTTTAGCTTGGTGGTGAGCTCGTGGCCTTCATCTTCTGTTCAACTAATGGGCATGAACTGCATCATGGCTAAACAAGGCGAGAAGCATCGGGTCCTCAGAGGGATTGTAGCTAATAGTCTTAGCTACATTGGGTTAGAGTCCTTAATACCTAAGCTCTGTGATACCGTTAAGTTTCATCATGAAACCGAATGGCGAGGCAAGGAAGAGATTAGCCTCTACCGTTCGGCAAAAGTTCTCACTTTCACTGTAGTATTTGAGTGTTTGTATGGGATAAAAGTGGAGATTGGGATGTTAGAGGTCTTTGAGAGGGTTTTAGAAGGTGTTTTCGCTTTGCCGGTTGAGTTTCCTTGTTCTAAGTTTGCTAGAGCAAAGAAAGCAAGGCTAGAGATAGAGACATTTCTAGTTGGGAAGGTCAGGGAGAAGCGAAGAGAAATGGAAAAAGAGGGAGCTGAGAAGCCAAACACAACGCTTTTCTCGAGGCTAGTAGAAGAGTTGATCAAAGGTGTGATAACCGAAGAAGAGGTTGTAGATAATATGGTTTTGCTAGTGTTTGCAGCTCATGACACAACCTCTTACGCCATGTCCATGACTTTCAAGATGTTAGCTCAGCACCCAACTTGTCGTGACACTCTCCTTCAAGAACATGCTCAAATAAAAGCAAACAAAGGGGAAGGAGAATATCTTACAGTGGAAGATGTGAAAAAGATGAAGTATAGTTGGCAAGTTGTTCGTGAAACAATGCGATTATCCCCTCCAATCTTCGGTTCTTTCAGAAAAGCAGTGGCTGATATTGACTATGGAGGATACACAATCCCCAAAGGCTGGAAGATACTCTGGACCACTTATGGAACTCATTATAATCCTGAAATATTTCAAGATCCAATGAGTTTTGATCCAACAAGATTTGATAAGCCAATACAGGCATATACATATCTACCATTTGGAGGTGGACCAAGGCTTTGTGCAGGTCACCAACTAGCCAAAATCAGCATTCTCGTTTTCATGCATTTTGTTGTGACAGGTTTTGACTGGTCCTTAGTCTACCCAGATGAGACAATTAGCATGGATCCTCTCCCATTTCCGTCCCTTGGAATGCCAATCAAAATTTCTCCCAAGGTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

485

Amino Acids

55.4

Weight (kDa)

9.1

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 475 1.9e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1191
Acc36I ACCTGC 1 cut(s) 1289
AccB7I CCANNNNNTGG 2 cut(s) 164, 1155
AccI GTMKAC 1 cut(s) 1374
AciI CCGC 1 cut(s) 82
AclWI GGATC 6 cut(s) 242, 283, 1205, 1220, 1394, 1407
AcsI RAATTY 1 cut(s) 1437
AcuI CTGAAG 1 cut(s) 324
AfiI CCNNNNNNNGG 5 cut(s) 164, 1094, 1155, 1277, 1421
AgsI TTSAA 5 cut(s) 259, 374, 928, 971, 1208
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 4 cut(s) 1081, 1113, 1423, 1455
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 2 cut(s) 719, 1379
AlwI GGATC 6 cut(s) 242, 283, 1205, 1220, 1394, 1407
AlwNI CAGNNNCTG 1 cut(s) 1118
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 50, 887
ApoI RAATTY 1 cut(s) 1437
ArsI GACNNNNNNTTYG 2 cut(s) 1275, 1307
Asp700I GAANNNNTTC 2 cut(s) 254, 1203
AspS9I GGNCC 4 cut(s) 424, 1170, 1283, 1365
AsuHPI GGTGA 5 cut(s) 86, 179, 270, 358, 1295
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 4 cut(s) 424, 1170, 1283, 1365
BamHI GGATCC 1 cut(s) 1399
BanII GRGCYC 1 cut(s) 353
BauI CACGAG 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 37, 899
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 1130
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 719, 1379
BfaI CTAG 6 cut(s) 696, 716, 734, 815, 878, 1310
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 1289
BfuI GTATCC 1 cut(s) 1130
BisI GCNGC 2 cut(s) 51, 888
BlpI GCTNAGC 1 cut(s) 939
BlsI GCNGC 2 cut(s) 52, 889
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 4 cut(s) 424, 1170, 1283, 1365
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 4 cut(s) 424, 1170, 1283, 1365
BmiI GGNNCC 2 cut(s) 425, 1401
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 402, 427
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 46, 162
Bpu10I CCTNAGC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 939
BsaJI CCNNGG 5 cut(s) 158, 230, 1286, 1420, 1446
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 1094, 1155, 1277, 1421
Bse118I RCCGGY 1 cut(s) 667
Bse1I ACTGG 1 cut(s) 1367
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 5 cut(s) 158, 230, 1286, 1420, 1446
BseGI GGATG 1 cut(s) 627
BseLI CCNNNNNNNGG 5 cut(s) 164, 1094, 1155, 1277, 1421
BseMII CTCAG 4 cut(s) 206, 442, 774, 953
BseNI ACTGG 1 cut(s) 1367
BseXI GCAGC 2 cut(s) 37, 899
BsgI GTGCAG 1 cut(s) 1317
BshFI GGCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 1 cut(s) 1402
BslI CCNNNNNNNGG 5 cut(s) 164, 1094, 1155, 1277, 1421
BsmAI GTCTC 2 cut(s) 719, 1379
BsmFI GGGAC 1 cut(s) 1402
BsmI GAATGC 2 cut(s) 1323, 1431
BsnI GGCC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
Bsp1720I GCTNAGC 1 cut(s) 939
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 4 cut(s) 205, 441, 775, 952
BspHI TCATGA 2 cut(s) 511, 892
BspLI GGNNCC 2 cut(s) 425, 1401
BspMI ACCTGC 1 cut(s) 1289
BspPI GGATC 6 cut(s) 242, 283, 1205, 1220, 1394, 1407
BsrFI RCCGGY 1 cut(s) 667
BsrI ACTGG 1 cut(s) 1367
BssAI RCCGGY 1 cut(s) 667
BssECI CCNNGG 5 cut(s) 158, 230, 1286, 1420, 1446
BssMI GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
BssSI CACGAG 1 cut(s) 352
BssT1I CCWWGG 5 cut(s) 158, 230, 1286, 1420, 1446
Bst2BI CACGAG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 4 cut(s) 499, 554, 580, 1021
Bst6I CTCTTC 4 cut(s) 531, 754, 816, 846
BstAPI GCANNNNNTGC 1 cut(s) 390
BstDEI CTNAG 8 cut(s) 192, 428, 452, 483, 687, 783, 939, 1369
BstDSI CCRYGG 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 1301
BstF5I GGATG 1 cut(s) 627
BstKTI GATC 6 cut(s) 237, 278, 831, 1213, 1228, 1402
BstMAI GTCTC 2 cut(s) 719, 1379
BstMBI GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
BstMWI GCNNNNNNNGC 2 cut(s) 390, 707
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 980
BstPI GGTNACC 1 cut(s) 1301
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 37, 899
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 1210, 1399
BstYI RGATCY 2 cut(s) 1210, 1399
BsuI GTATCC 1 cut(s) 1130
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 627
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 576, 1026, 1119
BveI ACCTGC 1 cut(s) 1289
CaiI CAGNNNCTG 1 cut(s) 1118
CciI TCATGA 2 cut(s) 511, 892
Cfr10I RCCGGY 1 cut(s) 667
Cfr13I GGNCC 4 cut(s) 424, 1170, 1283, 1365
DdeI CTNAG 8 cut(s) 192, 428, 452, 483, 687, 783, 939, 1369
DpnI GATC 6 cut(s) 236, 277, 830, 1212, 1227, 1401
DpnII GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
Eam1104I CTCTTC 4 cut(s) 531, 754, 816, 846
EarI CTCTTC 4 cut(s) 531, 754, 816, 846
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 5 cut(s) 158, 230, 1286, 1420, 1446
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 4 cut(s) 424, 1170, 1283, 1365
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 808
Eco91I GGTNACC 1 cut(s) 1301
EcoICRI GAGCTC 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 1301
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 5 cut(s) 158, 230, 1286, 1420, 1446
EcoT22I ATGCAT 2 cut(s) 47, 1341
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 5 cut(s) 158, 230, 1286, 1420, 1446
FaqI GGGAC 1 cut(s) 1402
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 1374
Fnu4HI GCNGC 2 cut(s) 51, 888
FokI GGATG 1 cut(s) 634
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 51, 888
FspBI CTAG 6 cut(s) 696, 716, 734, 815, 878, 1310
GluI GCNGC 2 cut(s) 51, 888
GsuI CTGGAG 2 cut(s) 46, 162
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 668
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 4 cut(s) 99, 115, 267, 470
HpaII CCGG 1 cut(s) 668
HphI GGTGA 5 cut(s) 86, 179, 270, 358, 1295
Hpy166II GTNNAC 2 cut(s) 1283, 1375
Hpy188I TCNGA 4 cut(s) 120, 195, 431, 1106
Hpy8I GTNNAC 2 cut(s) 1283, 1375
HpyAV CCTTC 5 cut(s) 369, 644, 736, 977, 998
HpyCH4III ACNGT 4 cut(s) 499, 554, 580, 1021
HpyCH4V TGCA 6 cut(s) 45, 53, 393, 887, 1298, 1339
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 707
HpyF3I CTNAG 8 cut(s) 192, 428, 452, 483, 687, 783, 939, 1369
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
LmnI GCTCC 2 cut(s) 299, 779
Lsp1109I GCAGC 2 cut(s) 37, 899
LweI GCATC 2 cut(s) 402, 427
MaeI CTAG 6 cut(s) 696, 716, 734, 815, 878, 1310
MaeIII GTNAC 3 cut(s) 956, 1301, 1348
MalI GATC 6 cut(s) 236, 277, 830, 1212, 1227, 1401
MboI GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
MflI RGATCY 2 cut(s) 1210, 1399
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 1389, 1437
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 2 cut(s) 351, 1253
Mph1103I ATGCAT 2 cut(s) 47, 1341
MroXI GAANNNNTTC 2 cut(s) 254, 1203
MseI TTAA 2 cut(s) 476, 501
MslI CAYNNNNRTG 1 cut(s) 917
MspI CCGG 1 cut(s) 668
MspR9I CCNGG 1 cut(s) 141
Mva1269I GAATGC 2 cut(s) 1323, 1431
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 390, 707
NcoI CCATGG 1 cut(s) 158
NdeII GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
NlaIV GGNNCC 2 cut(s) 425, 1401
NmuCI GTSAC 3 cut(s) 956, 1301, 1348
NsiI ATGCAT 2 cut(s) 47, 1341
NspI RCATGY 1 cut(s) 980
PaeR7I CTCGAG 1 cut(s) 808
PagI TCATGA 2 cut(s) 511, 892
PcsI WCGNNNNNNNCGW 1 cut(s) 806
PctI GAATGC 2 cut(s) 1323, 1431
PdmI GAANNNNTTC 2 cut(s) 254, 1203
PfeI GAWTC 3 cut(s) 99, 115, 267
PflMI CCANNNNNTGG 2 cut(s) 164, 1155
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 2 cut(s) 52, 889
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 424
PsiI TTATAA 1 cut(s) 1191
Psp124BI GAGCTC 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 1301
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 425, 1401
PspPI GGNCC 4 cut(s) 424, 1170, 1283, 1365
PspPPI RGGWCCY 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 1118
PsuI RGATCY 2 cut(s) 1210, 1399
RseI CAYNNNNRTG 1 cut(s) 917
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 476, 501
SatI GCNGC 2 cut(s) 51, 888
Sau3AI GATC 6 cut(s) 234, 275, 828, 1210, 1225, 1399
Sau96I GGNCC 4 cut(s) 424, 1170, 1283, 1365
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 2 cut(s) 402, 427
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 1 cut(s) 808
SinI GGWCC 4 cut(s) 424, 1170, 1283, 1365
SlaI CTCGAG 1 cut(s) 808
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 2 cut(s) 1389, 1437
SsiI CCGC 1 cut(s) 82
SspI AATATT 1 cut(s) 1203
SspMI CTAG 6 cut(s) 696, 716, 734, 815, 878, 1310
SstI GAGCTC 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 5 cut(s) 158, 230, 1286, 1420, 1446
TaaI ACNGT 4 cut(s) 499, 554, 580, 1021
TaqI TCGA 1 cut(s) 809
TasI AATT 2 cut(s) 1389, 1437
TfiI GAWTC 3 cut(s) 99, 115, 267
Tru1I TTAA 2 cut(s) 476, 501
Tru9I TTAA 2 cut(s) 476, 501
TscAI CASTG 3 cut(s) 583, 1026, 1119
TseFI GTSAC 3 cut(s) 956, 1301, 1348
TseI GCWGC 2 cut(s) 50, 887
Tsp45I GTSAC 3 cut(s) 956, 1301, 1348
TspDTI ATGAA 7 cut(s) 91, 351, 401, 497, 528, 1055, 1324
TspGWI ACGGA 1 cut(s) 1404
TspRI CASTG 3 cut(s) 583, 1026, 1119
Van91I CCANNNNNTGG 2 cut(s) 164, 1155
VpaK11BI GGWCC 4 cut(s) 424, 1170, 1283, 1365
XapI RAATTY 1 cut(s) 1437
XceI RCATGY 1 cut(s) 980
XhoI CTCGAG 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 1374
XmnI GAANNNNTTC 2 cut(s) 254, 1203
XspI CTAG 6 cut(s) 696, 716, 734, 815, 878, 1310
Zsp2I ATGCAT 2 cut(s) 47, 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.