Rh2CG472300

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014530
Physical Location & Seq
Forward (+)
63755530 .. 63756951
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG472300.1

Sequence Viewer

Length: 1032 bp
ATGGGTACTGAAATGAGGTTCACTCCACTCTGTTTGTTCTGTATATTAGCTGCAACATTAGTCCTCATCGTCATTTACTTGAAGCACAAGAAACACTTTGGTACAAGCAAGAGAAAACTACCACCTGGGGAAATGGGGCTTCCCTGGATAGGCCAAACAATGGAGTTCTACAGAGCTCAACAGAAAAACAGTTTGTTCGATGACTTTGTTCAGCCCTGGATTGCAAAATATGGCAAAATCTTCACAACACATCTAATGGGATCACCAACTGTGATTGTGAATGGAGCCAATGCTAACAGATTCCTGTTGTCCAATGAGTTCAAGCTGGTGATAAGTTCGTGGCCTTCAGCATCGGTTCAGCTTATGGGGAAGAACTCCATCATGGAAAAGCAGGGGGAGAGGCACTGCTGCCTTCGCGGGCTTATAGGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACTTTAGTGCCTAAAATATGTAACTTAATGAAGTTGCACTTGGACACAAAATGGAAAGGCCAGGATGAGATCAGCCTGTATCGTGCAACGAAATTCTTGGCTTTTTCGATAGTTTTTGAGTGCTTGTTAGGGATCAATGTGAAGGCAGATATGTTGGGAACATTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATTTTCCGGGGTCCAGCTTTTGGCGAGCAAAGAAAGCGAGGAAGGAGATTGAGAAAATACTGGTTAAAGCAGATCCATATTGCCACAGTGTCCTACTTAAAGAACATGCTGAGATAATGAGAAGCAAAAAACCTGGTGATCAAAATATGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGCTCACGAAAGCATGCGTCTCTTCCCTCCTATCTTCGGCTCTTTCAGGAAAGACATTGCTGATATTGAATATGAAGGATTCACTATTCCACGAGGATGGAAGGTGTTGTGGACAACATATGGAACACATTACAATTCAGAATATTTTGAAGACCCTTCGAGATTCAATCTAAGCCGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

343

Amino Acids

39.28

Weight (kDa)

9.35

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 41 - 214 2.4e-06 Cytochrome P450
p450 PF00067 255 - 343 4e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 835
AccB7I CCANNNNNTGG 2 cut(s) 160, 678
AccII CGCG 1 cut(s) 417
AciI CCGC 1 cut(s) 417
AclWI GGATC 3 cut(s) 268, 596, 725
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 7, 103, 836
AfiI CCNNNNNNNGG 5 cut(s) 149, 160, 442, 678, 884
AgsI TTSAA 5 cut(s) 82, 322, 917, 998, 1015
AjnI CCWGG 7 cut(s) 124, 143, 215, 441, 516, 790, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 5 cut(s) 50, 176, 325, 361, 675
AluI AGCT 5 cut(s) 50, 176, 325, 361, 675
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 449, 872
AlwI GGATC 3 cut(s) 268, 596, 725
AoxI GGCC 4 cut(s) 151, 341, 439, 514
ApeKI GCWGC 3 cut(s) 50, 408, 647
ApoI RAATTY 1 cut(s) 548
AseI ATTAAT 1 cut(s) 657
AspS9I GGNCC 1 cut(s) 669
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 3 cut(s) 255, 340, 806
AvaII GGWCC 1 cut(s) 669
BalI TGGCCA 1 cut(s) 441
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 939
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 37, 395, 659
BccI CCATC 2 cut(s) 386, 939
BciT130I CCWGG 7 cut(s) 126, 145, 217, 443, 518, 792, 841
BclI TGATCA 1 cut(s) 796
BcnI CCSGG 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 449, 872
BfmI CTRYAG 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 835
BisI GCNGC 3 cut(s) 51, 409, 648
BlsI GCNGC 3 cut(s) 52, 410, 649
Bme1390I CCNGG 8 cut(s) 126, 145, 217, 443, 518, 666, 792, 841
Bme18I GGWCC 1 cut(s) 669
BmgT120I GGNCC 1 cut(s) 669
BmiI GGNNCC 2 cut(s) 286, 670
BmrFI CCNGG 8 cut(s) 126, 145, 217, 443, 518, 666, 792, 841
BmsI GCATC 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 1005
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpuEI CTTGAG 2 cut(s) 415, 473
BpuMI CCSGG 1 cut(s) 666
BsaJI CCNNGG 5 cut(s) 125, 143, 215, 436, 665
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 160, 442, 678, 884
Bse118I RCCGGY 1 cut(s) 1023
Bse1I ACTGG 1 cut(s) 723
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 7 cut(s) 126, 145, 217, 443, 518, 792, 841
BseDI CCNNGG 5 cut(s) 125, 143, 215, 436, 665
BseGI GGATG 3 cut(s) 526, 820, 950
BseLI CCNNNNNNNGG 5 cut(s) 149, 160, 442, 678, 884
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 1 cut(s) 723
BseXI GCAGC 3 cut(s) 37, 395, 659
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 4 cut(s) 153, 343, 441, 516
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 665, 1024
BslI CCNNNNNNNGG 5 cut(s) 149, 160, 442, 678, 884
BsmAI GTCTC 2 cut(s) 449, 872
BsmBI CGTCTC 1 cut(s) 872
BsnI GGCC 4 cut(s) 153, 343, 441, 516
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 5 cut(s) 260, 525, 588, 730, 796
BspACI CCGC 1 cut(s) 417
BspANI GGCC 4 cut(s) 153, 343, 441, 516
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 286, 670
BspMI ACCTGC 1 cut(s) 835
BspPI GGATC 3 cut(s) 268, 596, 725
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 1023
BsrI ACTGG 1 cut(s) 723
BssAI RCCGGY 1 cut(s) 1023
BssECI CCNNGG 5 cut(s) 125, 143, 215, 436, 665
BssMI GATC 5 cut(s) 260, 525, 588, 730, 796
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 7 cut(s) 126, 145, 217, 443, 518, 792, 841
Bst4CI ACNGT 3 cut(s) 191, 271, 746
Bst6I CTCTTC 1 cut(s) 875
BstC8I GCNNGC 3 cut(s) 419, 684, 863
BstDEI CTNAG 2 cut(s) 768, 1019
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 3 cut(s) 526, 820, 950
BstFNI CGCG 1 cut(s) 417
BstKTI GATC 5 cut(s) 263, 528, 591, 733, 799
BstMAI GTCTC 2 cut(s) 449, 872
BstMBI GATC 5 cut(s) 260, 525, 588, 730, 796
BstMWI GCNNNNNNNGC 2 cut(s) 414, 692
BstNI CCWGG 7 cut(s) 126, 145, 217, 443, 518, 792, 841
BstNSI RCATGY 2 cut(s) 767, 865
BstSCI CCNGG 8 cut(s) 124, 143, 215, 441, 516, 664, 790, 839
BstSFI CTRYAG 1 cut(s) 169
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 37, 395, 659
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 730
BstXI CCANNNNNNTGG 1 cut(s) 945
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 4 cut(s) 153, 343, 441, 516
BtsCI GGATG 3 cut(s) 526, 820, 950
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 403, 751
BveI ACCTGC 1 cut(s) 835
Cac8I GCNNGC 3 cut(s) 419, 684, 863
Cfr10I RCCGGY 1 cut(s) 1023
Cfr13I GGNCC 1 cut(s) 669
CseI GACGC 1 cut(s) 854
CsiI ACCWGGT 1 cut(s) 790
Csp6I GTAC 3 cut(s) 6, 102, 835
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 4 cut(s) 382, 764, 829, 862
CviQI GTAC 3 cut(s) 6, 102, 835
DdeI CTNAG 2 cut(s) 768, 1019
DpnI GATC 5 cut(s) 262, 527, 590, 732, 798
DpnII GATC 5 cut(s) 260, 525, 588, 730, 796
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoRII CCWGG 7 cut(s) 124, 143, 215, 441, 516, 790, 839
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 872
FaeI CATG 4 cut(s) 385, 767, 832, 865
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 479, 511
FatI CATG 4 cut(s) 381, 763, 828, 861
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 1 cut(s) 967
FbaI TGATCA 1 cut(s) 796
Fnu4HI GCNGC 3 cut(s) 51, 409, 648
FokI GGATG 3 cut(s) 533, 827, 957
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 51, 409, 648
GluI GCNGC 3 cut(s) 51, 409, 648
HaeIII GGCC 4 cut(s) 153, 343, 441, 516
HapII CCGG 2 cut(s) 665, 1024
HgaI GACGC 1 cut(s) 854
Hin1II CATG 4 cut(s) 385, 767, 832, 865
HinfI GANTC 3 cut(s) 300, 927, 1011
HpaII CCGG 2 cut(s) 665, 1024
HphI GGTGA 3 cut(s) 255, 340, 806
Hpy166II GTNNAC 3 cut(s) 21, 837, 960
Hpy188I TCNGA 1 cut(s) 988
Hpy188III TCNNGA 3 cut(s) 854, 895, 1008
Hpy8I GTNNAC 3 cut(s) 21, 837, 960
HpyAV CCTTC 8 cut(s) 354, 422, 592, 629, 694, 917, 943, 1014
HpyCH4III ACNGT 3 cut(s) 191, 271, 746
HpyCH4V TGCA 5 cut(s) 53, 224, 493, 542, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 692
HpyF3I CTNAG 2 cut(s) 768, 1019
Hsp92II CATG 4 cut(s) 385, 767, 832, 865
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 5 cut(s) 260, 525, 588, 730, 796
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 3 cut(s) 37, 395, 659
LweI GCATC 1 cut(s) 359
MabI ACCWGGT 1 cut(s) 790
MaeIII GTNAC 1 cut(s) 476
MalI GATC 5 cut(s) 262, 527, 590, 732, 798
MboI GATC 5 cut(s) 260, 525, 588, 730, 796
MboII GAAGA 6 cut(s) 232, 382, 835, 862, 874, 1010
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 4 cut(s) 548, 654, 658, 982
MluNI TGGCCA 1 cut(s) 441
MnlI CCTC 7 cut(s) 9, 74, 393, 618, 690, 885, 935
Mox20I TGGCCA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 441
MseI TTAA 4 cut(s) 482, 657, 723, 756
MslI CAYNNNNRTG 1 cut(s) 943
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 2 cut(s) 665, 1024
MspR9I CCNGG 8 cut(s) 126, 145, 217, 443, 518, 666, 792, 841
MvaI CCWGG 7 cut(s) 126, 145, 217, 443, 518, 792, 841
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 414, 692
NciI CCSGG 1 cut(s) 666
NdeI CATATG 1 cut(s) 967
NdeII GATC 5 cut(s) 260, 525, 588, 730, 796
NlaIII CATG 4 cut(s) 385, 767, 832, 865
NlaIV GGNNCC 2 cut(s) 286, 670
NspI RCATGY 2 cut(s) 767, 865
PaeI GCATGC 1 cut(s) 865
PfeI GAWTC 3 cut(s) 300, 927, 1011
PflMI CCANNNNNTGG 2 cut(s) 160, 678
PkrI GCNGC 3 cut(s) 52, 410, 649
PshBI ATTAAT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 7 cut(s) 124, 143, 215, 441, 516, 790, 839
PspGI CCWGG 7 cut(s) 124, 143, 215, 441, 516, 790, 839
PspN4I GGNNCC 2 cut(s) 286, 670
PspPI GGNCC 1 cut(s) 669
PsrI GAACNNNNNNTAC 2 cut(s) 818, 850
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 3 cut(s) 7, 103, 836
RsaNI GTAC 3 cut(s) 6, 102, 835
RseI CAYNNNNRTG 1 cut(s) 943
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 4 cut(s) 482, 657, 723, 756
SatI GCNGC 3 cut(s) 51, 409, 648
Sau3AI GATC 5 cut(s) 260, 525, 588, 730, 796
Sau96I GGNCC 1 cut(s) 669
ScrFI CCNGG 8 cut(s) 126, 145, 217, 443, 518, 666, 792, 841
SduI GDGCHC 1 cut(s) 178
SexAI ACCWGGT 1 cut(s) 790
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 943
SmlI CTYRAG 2 cut(s) 430, 452
SmoI CTYRAG 2 cut(s) 430, 452
SphI GCATGC 1 cut(s) 865
Sse9I AATT 4 cut(s) 548, 654, 658, 982
SsiI CCGC 1 cut(s) 417
SspI AATATT 1 cut(s) 992
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 8 cut(s) 124, 143, 215, 441, 516, 664, 790, 839
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 3 cut(s) 191, 271, 746
TaqI TCGA 3 cut(s) 198, 563, 1007
TasI AATT 4 cut(s) 548, 654, 658, 982
TatI WGTACW 1 cut(s) 834
TfiI GAWTC 3 cut(s) 300, 927, 1011
Tru1I TTAA 4 cut(s) 482, 657, 723, 756
Tru9I TTAA 4 cut(s) 482, 657, 723, 756
TscAI CASTG 2 cut(s) 410, 751
TseI GCWGC 3 cut(s) 50, 408, 647
TspDTI ATGAA 3 cut(s) 500, 845, 936
TspRI CASTG 2 cut(s) 410, 751
Van91I CCANNNNNTGG 2 cut(s) 160, 678
VpaK11BI GGWCC 1 cut(s) 669
VspI ATTAAT 1 cut(s) 657
XagI CCTNNNNNAGG 1 cut(s) 440
XapI RAATTY 1 cut(s) 548
XceI RCATGY 2 cut(s) 767, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.