FvH4_6g38110

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014530
Physical Location & Seq
Forward (+)
30150709 .. 30152330
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38110.t1

Sequence Viewer

Length: 1440 bp
ATGAGGCACAGTCCACTTTGTTTGTTCTGTATATCAGCTGCAACATTTGTCCTGATCATTCTTTTCTTGAAGCACAAGAAACGGTTTGGCAAAAGCAAGGGAAAGCTACCACCGGGGGAAATGGGGCTTCCCTGGATAGGTCAAACAATGGAGTTCTACAAAGCTCAACAGAAGAACAGTTTGTTTGATGATTTTGTGCAACCGAGGATAGCTAAGTATGGCAAAATCTTCACAACACATTTGATGGGATCACCAACTGTGATTGTGAATGGAGCCAATGCTAATAAGTTCCTGCTTTCCAATGAGTTCAAGCTGGTCATAAGCTCGTGGCCTTCGGCGTCGGTTCAGCTCATGGGGAAGGACTCCATCATGGAAAAGCAAGGGGAGAGGCACCGCTGCCTTCGCGGGCTTATAGGCTCTAGCCTTGGCCAGGCAGGGCTTGAGACTTCGGTGCCTAAAATATGTAACTTAATGAAGTTGCATTTGGACACAAAATGGAAAGGTCAGGATGAGATAAGCCTGTATCGTTCAACGAAAGTCTTGACTTTTTCGATAGTATTTGAGTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACATTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATCAATTTTCCAGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAAGGACATTGAACAAATGCTGGTTAAAATAGTAAGAGAGAAGAAGATGCAAATGGAAGAAGGCAAGATACAAGAAGAGGAGCAGGGAGGGATGTTGCTGTCTCGATTAGTGGCTGGGATGATTCGAGGAGAAATTACTGAAAAGGAGGTTGTTGATAATGTGGTTTTGCTGGTGTTTGCAGCTCATGATACTACTTCTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGCGTCCTACTTGAAGAACATGCTGAGATAATGAGAAGCAAAACACCTGGTGATCAAAATCTGACATTGGATGACACAAAGAAGATGAAGTACACCTGGCAGGTTGCTCGTGAAAGCATGCGCCTTTTCCCTCCCATCTTCGGCTCATTCAGGAAAGCCATTGCTGATATTGAATATGAAGGATTCACTATCCCAAAAGGATGGAAGGTATTGTGGACAACATTTGGAACACATTACAATTCAGAGTACTTTGAAGATCCCTCGAGTTTCAATCCAAGCCGGTTTGAGGAGACTGTTCCACCATATGCCTTTCTGGCATTCGGAGGAGGGCCAAGAGTTTGTGCAGGGTACCAACTTGCTAAGCTGAACATCCTCATTTTCGTGCATTTCATCGTGACTCGTTATAACTGGTCTTTGCTATATGCTGATGAGCCTATATCCATGGATCCTCTTCCATTTCCTTCATATGGAATGCCTATTAAAATTACTCCAAAGTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

480

Amino Acids

54.41

Weight (kDa)

9.23

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 464 3.9e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1341
Acc36I ACCTGC 1 cut(s) 1027
Acc65I GGTACC 1 cut(s) 1284
AccB1I GGYRCC 3 cut(s) 390, 451, 1284
AccB7I CCANNNNNTGG 1 cut(s) 666
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 394, 405
AclWI GGATC 5 cut(s) 256, 584, 1187, 1376, 1389
AcoI YGGCCR 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 986
AfaI GTAC 3 cut(s) 1028, 1184, 1286
AfiI CCNNNNNNNGG 6 cut(s) 137, 430, 666, 1076, 1222, 1403
AgsI TTSAA 9 cut(s) 70, 310, 531, 698, 907, 950, 1109, 1190, 1207
AjnI CCWGG 6 cut(s) 131, 429, 652, 659, 982, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 9 cut(s) 38, 106, 164, 212, 313, 324, 349, 869, 1300
AluI AGCT 9 cut(s) 38, 106, 164, 212, 313, 324, 349, 869, 1300
Alw26I GTCTC 3 cut(s) 437, 792, 1220
AlwI GGATC 5 cut(s) 256, 584, 1187, 1376, 1389
Ama87I CYCGRG 1 cut(s) 1198
AoxI GGCC 3 cut(s) 329, 427, 1265
ApeKI GCWGC 4 cut(s) 38, 396, 635, 866
Asp718I GGTACC 1 cut(s) 1284
AspLEI GCGC 1 cut(s) 1059
AspS9I GGNCC 2 cut(s) 657, 1265
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 243, 998
AvaI CYCGRG 1 cut(s) 1198
AvaII GGWCC 1 cut(s) 657
BalI TGGCCA 1 cut(s) 429
BamHI GGATCC 1 cut(s) 1381
BanI GGYRCC 3 cut(s) 390, 451, 1284
BarI GAAGNNNNNNTAC 4 cut(s) 738, 770, 1010, 1042
BauI CACGAG 2 cut(s) 325, 1044
BbvI GCAGC 4 cut(s) 25, 383, 647, 878
BccI CCATC 4 cut(s) 238, 374, 1079, 1131
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 6 cut(s) 133, 431, 654, 661, 984, 1033
BclI TGATCA 2 cut(s) 54, 988
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 437, 792, 1220
BfaI CTAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 1027
BglI GCCNNNNNGGC 1 cut(s) 1250
BisI GCNGC 4 cut(s) 39, 397, 636, 867
BlpI GCTNAGC 2 cut(s) 918, 1296
BlsI GCNGC 4 cut(s) 40, 398, 637, 868
BmcAI AGTACT 1 cut(s) 1184
Bme1390I CCNGG 7 cut(s) 114, 133, 431, 654, 661, 984, 1033
Bme18I GGWCC 1 cut(s) 657
BmeT110I CYCGRG 1 cut(s) 1198
BmgT120I GGNCC 2 cut(s) 657, 1265
BmiI GGNNCC 6 cut(s) 274, 392, 453, 658, 1286, 1383
BmrFI CCNGG 7 cut(s) 114, 133, 431, 654, 661, 984, 1033
BmsI GCATC 2 cut(s) 723, 931
Bpu1102I GCTNAGC 2 cut(s) 918, 1296
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 993
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 6 cut(s) 113, 131, 203, 424, 653, 1377
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 430, 666, 1076, 1222, 1403
Bse118I RCCGGY 1 cut(s) 1215
Bse1I ACTGG 1 cut(s) 1349
Bse3DI GCAATG 2 cut(s) 891, 1095
Bse8I GATNNNNATC 1 cut(s) 993
BseBI CCWGG 6 cut(s) 133, 431, 654, 661, 984, 1033
BseDI CCNNGG 6 cut(s) 113, 131, 203, 424, 653, 1377
BseGI GGATG 7 cut(s) 514, 783, 810, 922, 1012, 1142, 1305
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 6 cut(s) 137, 430, 666, 1076, 1222, 1403
BseMI GCAATG 2 cut(s) 891, 1095
BseMII CTCAG 2 cut(s) 932, 951
BseNI ACTGG 1 cut(s) 1349
BseRI GAGGAG 4 cut(s) 779, 828, 1238, 1275
BseXI GCAGC 4 cut(s) 25, 383, 647, 878
BseYI CCCAGC 1 cut(s) 800
BsgI GTGCAG 1 cut(s) 1299
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 331, 429, 1267
BshNI GGYRCC 3 cut(s) 390, 451, 1284
BsiHKCI CYCGRG 1 cut(s) 1198
BsiSI CCGG 2 cut(s) 113, 1216
BslI CCNNNNNNNGG 6 cut(s) 137, 430, 666, 1076, 1222, 1403
BsmAI GTCTC 3 cut(s) 437, 792, 1220
BsmI GAATGC 2 cut(s) 1253, 1413
BsnI GGCC 3 cut(s) 331, 429, 1267
BsoBI CYCGRG 1 cut(s) 1198
Bsp143I GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
Bsp1720I GCTNAGC 2 cut(s) 918, 1296
Bsp19I CCATGG 1 cut(s) 1377
BspACI CCGC 2 cut(s) 394, 405
BspANI GGCC 3 cut(s) 331, 429, 1267
BspCNI CTCAG 2 cut(s) 931, 952
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 6 cut(s) 274, 392, 453, 658, 1286, 1383
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 5 cut(s) 256, 584, 1187, 1376, 1389
BspT107I GGYRCC 3 cut(s) 390, 451, 1284
BsrDI GCAATG 2 cut(s) 891, 1095
BsrFI RCCGGY 1 cut(s) 1215
BsrI ACTGG 1 cut(s) 1349
BssAI RCCGGY 1 cut(s) 1215
BssECI CCNNGG 6 cut(s) 113, 131, 203, 424, 653, 1377
BssMI GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
BssNI GRCGYC 1 cut(s) 338
BssSI CACGAG 2 cut(s) 325, 1044
BssT1I CCWWGG 2 cut(s) 424, 1377
Bst2BI CACGAG 2 cut(s) 325, 1044
Bst2UI CCWGG 6 cut(s) 133, 431, 654, 661, 984, 1033
Bst4CI ACNGT 5 cut(s) 11, 84, 179, 259, 1231
Bst6I CTCTTC 2 cut(s) 756, 1392
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 407, 672, 1055
BstDEI CTNAG 4 cut(s) 213, 918, 960, 1296
BstDSI CCRYGG 1 cut(s) 1377
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 7 cut(s) 514, 783, 810, 922, 1012, 1142, 1305
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 1059
BstKTI GATC 6 cut(s) 57, 251, 579, 991, 1195, 1384
BstMAI GTCTC 3 cut(s) 437, 792, 1220
BstMBI GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
BstMWI GCNNNNNNNGC 3 cut(s) 402, 680, 1250
BstNI CCWGG 6 cut(s) 133, 431, 654, 661, 984, 1033
BstNSI RCATGY 2 cut(s) 959, 1057
BstSCI CCNGG 7 cut(s) 112, 131, 429, 652, 659, 982, 1031
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 25, 383, 647, 878
BstX2I RGATCY 2 cut(s) 1192, 1381
BstXI CCANNNNNNTGG 1 cut(s) 1137
BstYI RGATCY 2 cut(s) 1192, 1381
BsuRI GGCC 3 cut(s) 331, 429, 1267
BtgI CCRYGG 1 cut(s) 1377
BtsCI GGATG 7 cut(s) 514, 783, 810, 922, 1012, 1142, 1305
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 3 cut(s) 407, 672, 1055
CciI TCATGA 1 cut(s) 871
CfoI GCGC 1 cut(s) 1059
Cfr10I RCCGGY 1 cut(s) 1215
Cfr13I GGNCC 2 cut(s) 657, 1265
CseI GACGC 2 cut(s) 327, 928
CsiI ACCWGGT 1 cut(s) 982
Csp6I GTAC 3 cut(s) 1027, 1183, 1285
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 7 cut(s) 352, 370, 872, 898, 956, 1054, 1378
CviQI GTAC 3 cut(s) 1027, 1183, 1285
DdeI CTNAG 4 cut(s) 213, 918, 960, 1296
DpnI GATC 6 cut(s) 56, 250, 578, 990, 1194, 1383
DpnII GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
DraIII CACNNNGTG 1 cut(s) 986
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 756, 1392
EarI CTCTTC 2 cut(s) 756, 1392
Eco130I CCWWGG 2 cut(s) 424, 1377
Eco47I GGWCC 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 1198
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 6 cut(s) 131, 429, 652, 659, 982, 1031
EcoT14I CCWWGG 2 cut(s) 424, 1377
ErhI CCWWGG 2 cut(s) 424, 1377
FaeI CATG 7 cut(s) 355, 373, 875, 901, 959, 1057, 1381
FatI CATG 7 cut(s) 351, 369, 871, 897, 955, 1053, 1377
FauI CCCGC 1 cut(s) 398
FauNDI CATATG 2 cut(s) 1240, 1402
FbaI TGATCA 2 cut(s) 54, 988
Fnu4HI GCNGC 4 cut(s) 39, 397, 636, 867
FokI GGATG 7 cut(s) 521, 790, 817, 909, 1019, 1149, 1292
Fsp4HI GCNGC 4 cut(s) 39, 397, 636, 867
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 1058
GluI GCNGC 4 cut(s) 39, 397, 636, 867
GsaI CCCAGC 1 cut(s) 804
HaeIII GGCC 3 cut(s) 331, 429, 1267
HapII CCGG 2 cut(s) 113, 1216
HgaI GACGC 2 cut(s) 327, 928
HhaI GCGC 1 cut(s) 1059
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 7 cut(s) 355, 373, 875, 901, 959, 1057, 1381
Hin6I GCGC 1 cut(s) 1057
HinP1I GCGC 1 cut(s) 1057
HinfI GANTC 4 cut(s) 362, 808, 1119, 1333
HpaII CCGG 2 cut(s) 113, 1216
HphI GGTGA 2 cut(s) 243, 998
Hpy166II GTNNAC 3 cut(s) 14, 1029, 1152
Hpy188I TCNGA 3 cut(s) 999, 1180, 1259
Hpy188III TCNNGA 9 cut(s) 52, 67, 506, 541, 789, 872, 1046, 1087, 1330
Hpy8I GTNNAC 3 cut(s) 14, 1029, 1152
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 5 cut(s) 11, 84, 179, 259, 1231
HpyCH4V TGCA 8 cut(s) 41, 199, 481, 635, 736, 866, 1280, 1321
HpyF10VI GCNNNNNNNGC 3 cut(s) 402, 680, 1250
HpyF3I CTNAG 4 cut(s) 213, 918, 960, 1296
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 7 cut(s) 355, 373, 875, 901, 959, 1057, 1381
HspAI GCGC 1 cut(s) 1057
KpnI GGTACC 1 cut(s) 1288
Ksp22I TGATCA 2 cut(s) 54, 988
Kzo9I GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
LmnI GCTCC 2 cut(s) 272, 766
Lsp1109I GCAGC 4 cut(s) 25, 383, 647, 878
LweI GCATC 2 cut(s) 723, 931
MabI ACCWGGT 1 cut(s) 982
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 464, 1330
MalI GATC 6 cut(s) 56, 250, 578, 990, 1194, 1383
MboI GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
MflI RGATCY 2 cut(s) 1192, 1381
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 4 cut(s) 646, 819, 1174, 1419
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 2 cut(s) 356, 1327
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 3 cut(s) 470, 711, 1416
MslI CAYNNNNRTG 2 cut(s) 896, 1316
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 38, 396
MspI CCGG 2 cut(s) 113, 1216
MspR9I CCNGG 7 cut(s) 114, 133, 431, 654, 661, 984, 1033
Mva1269I GAATGC 2 cut(s) 1253, 1413
MvaI CCWGG 6 cut(s) 133, 431, 654, 661, 984, 1033
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 402, 680, 1250
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 1377
NdeI CATATG 2 cut(s) 1240, 1402
NdeII GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
NlaIII CATG 7 cut(s) 355, 373, 875, 901, 959, 1057, 1381
NlaIV GGNNCC 6 cut(s) 274, 392, 453, 658, 1286, 1383
NmuCI GTSAC 1 cut(s) 1330
NspI RCATGY 2 cut(s) 959, 1057
PaeI GCATGC 1 cut(s) 1057
PaeR7I CTCGAG 1 cut(s) 1198
PagI TCATGA 1 cut(s) 871
PctI GAATGC 2 cut(s) 1253, 1413
PfeI GAWTC 2 cut(s) 808, 1119
PflMI CCANNNNNTGG 1 cut(s) 666
PkrI GCNGC 4 cut(s) 40, 398, 637, 868
PleI GAGTC 2 cut(s) 356, 1327
PpsI GAGTC 2 cut(s) 356, 1327
PsiI TTATAA 1 cut(s) 1341
Psp6I CCWGG 6 cut(s) 131, 429, 652, 659, 982, 1031
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 6 cut(s) 131, 429, 652, 659, 982, 1031
PspN4I GGNNCC 6 cut(s) 274, 392, 453, 658, 1286, 1383
PspPI GGNCC 2 cut(s) 657, 1265
PspXI VCTCGAGB 1 cut(s) 1198
PsuI RGATCY 2 cut(s) 1192, 1381
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 1028, 1184, 1286
RsaNI GTAC 3 cut(s) 1027, 1183, 1285
RseI CAYNNNNRTG 2 cut(s) 896, 1316
SaqAI TTAA 3 cut(s) 470, 711, 1416
SatI GCNGC 4 cut(s) 39, 397, 636, 867
Sau3AI GATC 6 cut(s) 54, 248, 576, 988, 1192, 1381
Sau96I GGNCC 2 cut(s) 657, 1265
ScaI AGTACT 1 cut(s) 1184
SchI GAGTC 2 cut(s) 356, 1327
ScrFI CCNGG 7 cut(s) 114, 133, 431, 654, 661, 984, 1033
SexAI ACCWGGT 1 cut(s) 982
SfaNI GCATC 2 cut(s) 723, 931
Sfr274I CTCGAG 1 cut(s) 1198
SinI GGWCC 1 cut(s) 657
SlaI CTCGAG 1 cut(s) 1198
SmiMI CAYNNNNRTG 2 cut(s) 896, 1316
SmlI CTYRAG 2 cut(s) 440, 1198
SmoI CTYRAG 2 cut(s) 440, 1198
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 4 cut(s) 646, 819, 1174, 1419
SsiI CCGC 2 cut(s) 394, 405
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 7 cut(s) 112, 131, 429, 652, 659, 982, 1031
StyI CCWWGG 2 cut(s) 424, 1377
TaaI ACNGT 5 cut(s) 11, 84, 179, 259, 1231
TaqI TCGA 4 cut(s) 551, 790, 811, 1199
TasI AATT 4 cut(s) 646, 819, 1174, 1419
TatI WGTACW 2 cut(s) 1026, 1182
TfiI GAWTC 2 cut(s) 808, 1119
Tru1I TTAA 3 cut(s) 470, 711, 1416
Tru9I TTAA 3 cut(s) 470, 711, 1416
TseFI GTSAC 1 cut(s) 1330
TseI GCWGC 4 cut(s) 38, 396, 635, 866
Tsp45I GTSAC 1 cut(s) 1330
TspDTI ATGAA 5 cut(s) 488, 1037, 1128, 1315, 1389
Van91I CCANNNNNTGG 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 657
XagI CCTNNNNNAGG 1 cut(s) 428
XceI RCATGY 2 cut(s) 959, 1057
XhoI CTCGAG 1 cut(s) 1198
XspI CTAG 1 cut(s) 420
ZrmI AGTACT 1 cut(s) 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.