Rw2G040210

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014530
Physical Location & Seq
Reverse (-)
65700724 .. 65702247
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040210.1

Sequence Viewer

Length: 1368 bp
ATGGCTACTGAAATGAGGTACACTCCACTCTGTTTGTTCTGTATATTAGCTGCAACATTAGTCCTCATCGTGATTTCCTTGAAGCACAAGAAACACTTTGGCACAAGCAAGAGAAAACTACCTCCTGGGGAAATGGGGCTTCCCTGGATAGGCCAAACAATGGAGTTCTACATAGTTCAACAGAAAATCAGTTTGTTCGATGACTTTGTTCAGCCCCGGATTGCAAAACATGGCAAAATCTTCACAACACATTTAGTGGGATCACCAACTGTGATTGTGAATGGAACCAATGCTAACAGATTCCTGTTGTCCAAGGAGTTCAAGCTGGTGATAAGTTCGTGGCCTTCAGCATCGATTCAGCTTATGGGGAAGGACTCCATCATGGAAAAGCAAGGGGAGAGGCACCGCTGCCTTTGCGGGCTTATAGGCTCAAGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACTTTAGTGCCTAAAATATGTAACTTAATGAAGTTGCACTTGGACACAAAATGGAAAGGCCAGGATGAGATCCGCCTGTATCATGCAACGAAAGTCTTGACTTTTTCGATAGTGTTTGACTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACATTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATTTTCCGGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAAGGAGATTGAGAAAATACTGGTTAAAGTAGTAAGAGAGAAGAAGAAGCACATGGAAGAAAGCAAGAAAGAAGAAGAAGAGCAAGGAGGGATGTTGGTGTCTCGATTAGTGGCTGGGATGATTCGAGGAGAAATTACCGAAGAGGAGGTTGTTGATAATGTGGTCTTGCTGGTGTTCGCAGCTCATGATACTACTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGTTTCCTACTTAAAGGATTGTATGCTCTTCAATTCAAACATGCTGAGATAATAAGAAGCAAAAAACCTGGTGATCAAAATCTGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGATCGCGAAAGCATGCGTCTCTTCCCTCCTATCTTCGGCTCTTTCAGGAAAGCCATTGCTGATATTGAATATGAAGGATTCACTATTCCACAAGGATGGAAGGTGTTGTGGACAACATATGGAACACATTACAATTCAGAATATTTTGAAGATCCTTCGAGTTTCAATCCAAGCCGGTTTGAGGAGCATGTTCCACCATATCCCTTTCTGGCATTCGGAGGAGGGCCAAGAGTTTGTGCAGGGTACCAACTTGCTAAGCTGAACGTCCTCATTTCGTGCATTTCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

455

Amino Acids

51.58

Weight (kDa)

9.12

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 41 - 450 1.2e-43 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1063
Acc65I GGTACC 1 cut(s) 1320
AccB1I GGYRCC 2 cut(s) 402, 1320
AccB7I CCANNNNNTGG 2 cut(s) 160, 684
AccII CGCG 1 cut(s) 1083
AciI CCGC 3 cut(s) 406, 417, 535
AclWI GGATC 4 cut(s) 268, 526, 602, 1223
AcoI YGGCCR 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 20, 1064, 1322
AfiI CCNNNNNNNGG 6 cut(s) 149, 160, 448, 684, 1112, 1258
AgsI TTSAA 9 cut(s) 82, 179, 322, 922, 983, 988, 1145, 1226, 1243
AjnI CCWGG 7 cut(s) 124, 143, 447, 522, 677, 1018, 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 6 cut(s) 50, 325, 361, 435, 887, 1336
AluI AGCT 6 cut(s) 50, 325, 361, 435, 887, 1336
Alw26I GTCTC 3 cut(s) 455, 810, 1100
AlwI GGATC 4 cut(s) 268, 526, 602, 1223
AoxI GGCC 5 cut(s) 151, 341, 445, 520, 1301
ApeKI GCWGC 4 cut(s) 50, 408, 653, 884
AseI ATTAAT 1 cut(s) 663
Asp718I GGTACC 1 cut(s) 1320
AspS9I GGNCC 2 cut(s) 675, 1301
AsuC2I CCSGG 2 cut(s) 217, 672
AsuHPI GGTGA 3 cut(s) 255, 340, 1034
AvaII GGWCC 1 cut(s) 675
BalI TGGCCA 1 cut(s) 447
BanI GGYRCC 2 cut(s) 402, 1320
BbvI GCAGC 4 cut(s) 37, 395, 665, 896
BccI CCATC 2 cut(s) 386, 1167
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 7 cut(s) 126, 145, 449, 524, 679, 1020, 1069
BclI TGATCA 1 cut(s) 1024
BcnI CCSGG 2 cut(s) 217, 672
BcoDI GTCTC 3 cut(s) 455, 810, 1100
BfuAI ACCTGC 1 cut(s) 1063
BisI GCNGC 4 cut(s) 51, 409, 654, 885
BlpI GCTNAGC 2 cut(s) 933, 1332
BlsI GCNGC 4 cut(s) 52, 410, 655, 886
Bme1390I CCNGG 9 cut(s) 126, 145, 217, 449, 524, 672, 679, 1020, 1069
Bme18I GGWCC 1 cut(s) 675
BmgT120I GGNCC 2 cut(s) 675, 1301
BmiI GGNNCC 4 cut(s) 286, 404, 676, 1322
BmrFI CCNGG 9 cut(s) 126, 145, 217, 449, 524, 672, 679, 1020, 1069
BmsI GCATC 2 cut(s) 359, 946
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu1102I GCTNAGC 2 cut(s) 933, 1332
BpuEI CTTGAG 3 cut(s) 415, 421, 479
BpuMI CCSGG 2 cut(s) 217, 672
Bsa29I ATCGAT 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 1029
BsaJI CCNNGG 6 cut(s) 125, 143, 215, 312, 442, 671
Bsc4I CCNNNNNNNGG 6 cut(s) 149, 160, 448, 684, 1112, 1258
Bse118I RCCGGY 1 cut(s) 1251
Bse1I ACTGG 1 cut(s) 729
Bse3DI GCAATG 2 cut(s) 906, 1131
Bse8I GATNNNNATC 1 cut(s) 1029
BseBI CCWGG 7 cut(s) 126, 145, 449, 524, 679, 1020, 1069
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 6 cut(s) 125, 143, 215, 312, 442, 671
BseGI GGATG 6 cut(s) 532, 801, 828, 937, 1048, 1178
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 6 cut(s) 149, 160, 448, 684, 1112, 1258
BseMI GCAATG 2 cut(s) 906, 1131
BseMII CTCAG 2 cut(s) 947, 987
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 4 cut(s) 846, 863, 1274, 1311
BseXI GCAGC 4 cut(s) 37, 395, 665, 896
BseYI CCCAGC 1 cut(s) 818
BsgI GTGCAG 1 cut(s) 1335
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 5 cut(s) 153, 343, 447, 522, 1303
BshNI GGYRCC 2 cut(s) 402, 1320
BshVI ATCGAT 1 cut(s) 353
BsiSI CCGG 3 cut(s) 217, 671, 1252
BslI CCNNNNNNNGG 6 cut(s) 149, 160, 448, 684, 1112, 1258
BsmAI GTCTC 3 cut(s) 455, 810, 1100
BsmBI CGTCTC 1 cut(s) 1100
BsmI GAATGC 1 cut(s) 1289
BsnI GGCC 5 cut(s) 153, 343, 447, 522, 1303
Bsp143I GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
Bsp1720I GCTNAGC 2 cut(s) 933, 1332
Bsp68I TCGCGA 1 cut(s) 1083
BspACI CCGC 3 cut(s) 406, 417, 535
BspANI GGCC 5 cut(s) 153, 343, 447, 522, 1303
BspCNI CTCAG 2 cut(s) 946, 988
BspDI ATCGAT 1 cut(s) 353
BspFNI CGCG 1 cut(s) 1083
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 286, 404, 676, 1322
BspMI ACCTGC 1 cut(s) 1063
BspPI GGATC 4 cut(s) 268, 526, 602, 1223
BspQI GCTCTTC 2 cut(s) 777, 984
BspT107I GGYRCC 2 cut(s) 402, 1320
BsrDI GCAATG 2 cut(s) 906, 1131
BsrFI RCCGGY 1 cut(s) 1251
BsrI ACTGG 1 cut(s) 729
BssAI RCCGGY 1 cut(s) 1251
BssECI CCNNGG 6 cut(s) 125, 143, 215, 312, 442, 671
BssMI GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
BssT1I CCWWGG 2 cut(s) 312, 442
Bst2UI CCWGG 7 cut(s) 126, 145, 449, 524, 679, 1020, 1069
Bst4CI ACNGT 2 cut(s) 271, 953
Bst6I CTCTTC 4 cut(s) 777, 840, 984, 1103
BstC8I GCNNGC 3 cut(s) 419, 690, 1091
BstDEI CTNAG 3 cut(s) 933, 996, 1332
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 6 cut(s) 532, 801, 828, 937, 1048, 1178
BstFNI CGCG 1 cut(s) 1083
BstKTI GATC 6 cut(s) 263, 534, 597, 1027, 1081, 1231
BstMAI GTCTC 3 cut(s) 455, 810, 1100
BstMBI GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
BstMWI GCNNNNNNNGC 2 cut(s) 414, 698
BstNI CCWGG 7 cut(s) 126, 145, 449, 524, 679, 1020, 1069
BstNSI RCATGY 3 cut(s) 995, 1093, 1268
BstSCI CCNGG 9 cut(s) 124, 143, 215, 447, 522, 670, 677, 1018, 1067
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 4 cut(s) 37, 395, 665, 896
BstX2I RGATCY 2 cut(s) 531, 1228
BstXI CCANNNNNNTGG 1 cut(s) 1173
BstYI RGATCY 2 cut(s) 531, 1228
Bsu15I ATCGAT 1 cut(s) 353
BsuRI GGCC 5 cut(s) 153, 343, 447, 522, 1303
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 6 cut(s) 532, 801, 828, 937, 1048, 1178
BtuMI TCGCGA 1 cut(s) 1083
BveI ACCTGC 1 cut(s) 1063
Cac8I GCNNGC 3 cut(s) 419, 690, 1091
CciI TCATGA 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 1251
Cfr13I GGNCC 2 cut(s) 675, 1301
ClaI ATCGAT 1 cut(s) 353
CseI GACGC 1 cut(s) 1082
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 3 cut(s) 19, 1063, 1321
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviQI GTAC 3 cut(s) 19, 1063, 1321
DdeI CTNAG 3 cut(s) 933, 996, 1332
DpnI GATC 6 cut(s) 262, 533, 596, 1026, 1080, 1230
DpnII GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 4 cut(s) 777, 840, 984, 1103
EarI CTCTTC 4 cut(s) 777, 840, 984, 1103
EciI GGCGGA 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 312, 442
Eco47I GGWCC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 330
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoRII CCWGG 7 cut(s) 124, 143, 447, 522, 677, 1018, 1067
EcoT14I CCWWGG 2 cut(s) 312, 442
ErhI CCWWGG 2 cut(s) 312, 442
Esp3I CGTCTC 1 cut(s) 1100
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 485, 517
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 1 cut(s) 1195
FbaI TGATCA 1 cut(s) 1024
Fnu4HI GCNGC 4 cut(s) 51, 409, 654, 885
FokI GGATG 6 cut(s) 539, 808, 835, 924, 1055, 1185
Fsp4HI GCNGC 4 cut(s) 51, 409, 654, 885
GluI GCNGC 4 cut(s) 51, 409, 654, 885
GsaI CCCAGC 1 cut(s) 822
HaeIII GGCC 5 cut(s) 153, 343, 447, 522, 1303
HapII CCGG 3 cut(s) 217, 671, 1252
HgaI GACGC 1 cut(s) 1082
HinfI GANTC 5 cut(s) 300, 355, 374, 826, 1155
HpaII CCGG 3 cut(s) 217, 671, 1252
HphI GGTGA 3 cut(s) 255, 340, 1034
Hpy166II GTNNAC 3 cut(s) 21, 1065, 1188
Hpy188I TCNGA 3 cut(s) 1035, 1216, 1295
Hpy188III TCNNGA 7 cut(s) 70, 559, 807, 890, 1082, 1123, 1365
Hpy8I GTNNAC 3 cut(s) 21, 1065, 1188
HpyAV CCTTC 8 cut(s) 354, 364, 598, 635, 700, 1145, 1171, 1242
HpyCH4III ACNGT 2 cut(s) 271, 953
HpyCH4IV ACGT 1 cut(s) 1341
HpyCH4V TGCA 7 cut(s) 53, 224, 499, 548, 653, 1316, 1356
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 698
HpyF3I CTNAG 3 cut(s) 933, 996, 1332
HpySE526I ACGT 1 cut(s) 1341
KpnI GGTACC 1 cut(s) 1324
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
LguI GCTCTTC 2 cut(s) 777, 984
LmnI GCTCC 1 cut(s) 1261
Lsp1109I GCAGC 4 cut(s) 37, 395, 665, 896
LweI GCATC 2 cut(s) 359, 946
MabI ACCWGGT 1 cut(s) 1018
MaeII ACGT 1 cut(s) 1341
MaeIII GTNAC 1 cut(s) 482
MalI GATC 6 cut(s) 262, 533, 596, 1026, 1080, 1230
MboI GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
MflI RGATCY 2 cut(s) 531, 1228
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 5 cut(s) 660, 664, 837, 983, 1210
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 447
MscI TGGCCA 1 cut(s) 447
MseI TTAA 4 cut(s) 488, 663, 729, 963
MslI CAYNNNNRTG 2 cut(s) 911, 1171
Msp20I TGGCCA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 3 cut(s) 217, 671, 1252
MspR9I CCNGG 9 cut(s) 126, 145, 217, 449, 524, 672, 679, 1020, 1069
Mva1269I GAATGC 1 cut(s) 1289
MvaI CCWGG 7 cut(s) 126, 145, 449, 524, 679, 1020, 1069
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 2 cut(s) 414, 698
NciI CCSGG 2 cut(s) 217, 672
NdeI CATATG 1 cut(s) 1195
NdeII GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
NlaIV GGNNCC 4 cut(s) 286, 404, 676, 1322
NruI TCGCGA 1 cut(s) 1083
NspI RCATGY 3 cut(s) 995, 1093, 1268
PaeI GCATGC 1 cut(s) 1093
PagI TCATGA 1 cut(s) 889
PciSI GCTCTTC 2 cut(s) 777, 984
PctI GAATGC 1 cut(s) 1289
PfeI GAWTC 4 cut(s) 300, 355, 826, 1155
PflMI CCANNNNNTGG 2 cut(s) 160, 684
PkrI GCNGC 4 cut(s) 52, 410, 655, 886
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 663
Psp6I CCWGG 7 cut(s) 124, 143, 447, 522, 677, 1018, 1067
PspFI CCCAGC 1 cut(s) 818
PspGI CCWGG 7 cut(s) 124, 143, 447, 522, 677, 1018, 1067
PspN4I GGNNCC 4 cut(s) 286, 404, 676, 1322
PspPI GGNCC 2 cut(s) 675, 1301
PsrI GAACNNNNNNTAC 2 cut(s) 1046, 1078
PsuI RGATCY 2 cut(s) 531, 1228
RruI TCGCGA 1 cut(s) 1083
RsaI GTAC 3 cut(s) 20, 1064, 1322
RsaNI GTAC 3 cut(s) 19, 1063, 1321
RseI CAYNNNNRTG 2 cut(s) 911, 1171
SapI GCTCTTC 2 cut(s) 777, 984
SaqAI TTAA 4 cut(s) 488, 663, 729, 963
SatI GCNGC 4 cut(s) 51, 409, 654, 885
Sau3AI GATC 6 cut(s) 260, 531, 594, 1024, 1078, 1228
Sau96I GGNCC 2 cut(s) 675, 1301
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 9 cut(s) 126, 145, 217, 449, 524, 672, 679, 1020, 1069
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 2 cut(s) 359, 946
SinI GGWCC 1 cut(s) 675
SmiMI CAYNNNNRTG 2 cut(s) 911, 1171
SmlI CTYRAG 3 cut(s) 430, 436, 458
SmoI CTYRAG 3 cut(s) 430, 436, 458
SphI GCATGC 1 cut(s) 1093
Sse9I AATT 5 cut(s) 660, 664, 837, 983, 1210
SsiI CCGC 3 cut(s) 406, 417, 535
SspI AATATT 1 cut(s) 1220
StyD4I CCNGG 9 cut(s) 124, 143, 215, 447, 522, 670, 677, 1018, 1067
StyI CCWWGG 2 cut(s) 312, 442
TaaI ACNGT 2 cut(s) 271, 953
TaiI ACGT 1 cut(s) 1344
TaqI TCGA 6 cut(s) 198, 353, 569, 808, 829, 1235
TasI AATT 5 cut(s) 660, 664, 837, 983, 1210
TatI WGTACW 1 cut(s) 1062
TfiI GAWTC 4 cut(s) 300, 355, 826, 1155
Tru1I TTAA 4 cut(s) 488, 663, 729, 963
Tru9I TTAA 4 cut(s) 488, 663, 729, 963
TseI GCWGC 4 cut(s) 50, 408, 653, 884
TspDTI ATGAA 4 cut(s) 506, 1073, 1164, 1350
Van91I CCANNNNNTGG 2 cut(s) 160, 684
VpaK11BI GGWCC 1 cut(s) 675
VspI ATTAAT 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 446
XceI RCATGY 3 cut(s) 995, 1093, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.