Rh2CG471800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014530
Physical Location & Seq
Forward (+)
63671020 .. 63675463
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG471800.1

Sequence Viewer

Length: 870 bp
ATGGGGAAGGACTCCATCATGGAAAAGCAAGGGGAGAGGCACCGCTGCCTTCGCGGGCTTATAGGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACTTTAGTGCCTAAAATATGTAACTTAATGAAGTTGCACTTGGACACAAAATGGAAAGGCCAGGATGAGGTCAGCCTGTATCGTGCAACGAAAGTCTTGACTTTTTCGATGGTGTTTGAGTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACGTTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATCTTCCGGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAAGGAGATTGAGAAAATATTGGTTAAAGTAGTAAGAGAGAAGAAGAAGCACATGGAAGAAAGCAAGAAAGAAGAAGAAGAGCAGGGAGGGATGTTGCTGTCTCGATTAGTGGCTGGGATGATTCGAGGAGAAATTACCGAAGAGGAGGTTGTTGATAATGTGGTCTTGCCGGTGTTTGCAGCTCATGATACTACTTCTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGTGTCCCACTTCAAGAACATGCTGAGATAATGAGAAGCAAAAAACCTGGTGATCAAAATCTGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGCTCACGAAAGCATGCGTCTCTTCCCTCCTATCTTCGGCTCTTTCAGGAAAGCCATTGCTGATATTGAATATGAAGGATTCACTATTCCACAAGGATGGAAGGTAATGTTTTCTGCTATAGACATTACTATTTTAGTTAGATGCTTTACTCACAGTTTTGGATTAAGTTTTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

289

Amino Acids

32.73

Weight (kDa)

8.7

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 269 8.6e-26 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 315
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 43, 54
AclI AACGTT 1 cut(s) 254
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 76
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 4 cut(s) 79, 160, 315, 725
AgsI TTSAA 3 cut(s) 556, 599, 758
AjnI CCWGG 5 cut(s) 78, 153, 308, 631, 680
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw26I GTCTC 3 cut(s) 86, 441, 713
AlwI GGATC 1 cut(s) 233
AoxI GGCC 2 cut(s) 76, 151
ApeKI GCWGC 3 cut(s) 45, 284, 515
AseI ATTAAT 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 32, 296, 527
BccI CCATC 3 cut(s) 23, 196, 780
BciT130I CCWGG 5 cut(s) 80, 155, 310, 633, 682
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 86, 441, 713
BfmI CTRYAG 1 cut(s) 807
BfuAI ACCTGC 1 cut(s) 676
BisI GCNGC 3 cut(s) 46, 285, 516
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 3 cut(s) 47, 286, 517
Bme1390I CCNGG 6 cut(s) 80, 155, 303, 310, 633, 682
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 41, 307
BmrFI CCNGG 6 cut(s) 80, 155, 303, 310, 633, 682
BmsI GCATC 2 cut(s) 580, 821
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 52, 110
BpuMI CCSGG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 73, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 160, 315, 725
Bse118I RCCGGY 1 cut(s) 505
Bse3DI GCAATG 2 cut(s) 540, 744
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 5 cut(s) 80, 155, 310, 633, 682
BseDI CCNNGG 2 cut(s) 73, 302
BseGI GGATG 6 cut(s) 163, 432, 459, 571, 661, 791
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 4 cut(s) 79, 160, 315, 725
BseMI GCAATG 2 cut(s) 540, 744
BseMII CTCAG 2 cut(s) 581, 600
BseRI GAGGAG 2 cut(s) 477, 494
BseXI GCAGC 3 cut(s) 32, 296, 527
BseYI CCCAGC 1 cut(s) 449
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 78, 153
BshNI GGYRCC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 302, 506
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 4 cut(s) 79, 160, 315, 725
BsmAI GTCTC 3 cut(s) 86, 441, 713
BsmBI CGTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 575
BsnI GGCC 2 cut(s) 78, 153
Bsp143I GATC 2 cut(s) 225, 637
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 2 cut(s) 43, 54
BspANI GGCC 2 cut(s) 78, 153
BspCNI CTCAG 2 cut(s) 580, 601
BspFNI CGCG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 41, 307
BspMI ACCTGC 1 cut(s) 676
BspPI GGATC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 39
BsrDI GCAATG 2 cut(s) 540, 744
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 2 cut(s) 73, 302
BssMI GATC 2 cut(s) 225, 637
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 5 cut(s) 80, 155, 310, 633, 682
Bst4CI ACNGT 2 cut(s) 587, 845
Bst6I CTCTTC 3 cut(s) 408, 471, 716
BstC8I GCNNGC 3 cut(s) 56, 321, 704
BstDEI CTNAG 2 cut(s) 567, 609
BstENI CCTNNNNNAGG 1 cut(s) 77
BstF5I GGATG 6 cut(s) 163, 432, 459, 571, 661, 791
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 2 cut(s) 228, 640
BstMAI GTCTC 3 cut(s) 86, 441, 713
BstMBI GATC 2 cut(s) 225, 637
BstMWI GCNNNNNNNGC 2 cut(s) 51, 329
BstNI CCWGG 5 cut(s) 80, 155, 310, 633, 682
BstNSI RCATGY 2 cut(s) 608, 706
BstSCI CCNGG 6 cut(s) 78, 153, 301, 308, 631, 680
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 32, 296, 527
BstXI CCANNNNNNTGG 1 cut(s) 786
BsuRI GGCC 2 cut(s) 78, 153
BtsCI GGATG 6 cut(s) 163, 432, 459, 571, 661, 791
BtsIMutI CAGTG 1 cut(s) 592
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 56, 321, 704
CciI TCATGA 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 306
CseI GACGC 1 cut(s) 695
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 1 cut(s) 676
CviAII CATG 7 cut(s) 19, 388, 521, 547, 605, 670, 703
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 2 cut(s) 567, 609
DpnI GATC 2 cut(s) 227, 639
DpnII GATC 2 cut(s) 225, 637
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 408, 471, 716
EarI CTCTTC 3 cut(s) 408, 471, 716
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 77
EcoRII CCWGG 5 cut(s) 78, 153, 308, 631, 680
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 713
FaeI CATG 7 cut(s) 22, 391, 524, 550, 608, 673, 706
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 575
FatI CATG 7 cut(s) 18, 387, 520, 546, 604, 669, 702
FauI CCCGC 1 cut(s) 47
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 46, 285, 516
FokI GGATG 6 cut(s) 170, 439, 466, 558, 668, 798
Fsp4HI GCNGC 3 cut(s) 46, 285, 516
GluI GCNGC 3 cut(s) 46, 285, 516
GsaI CCCAGC 1 cut(s) 453
HaeIII GGCC 2 cut(s) 78, 153
HapII CCGG 2 cut(s) 302, 506
HgaI GACGC 1 cut(s) 695
Hin1II CATG 7 cut(s) 22, 391, 524, 550, 608, 673, 706
HinfI GANTC 3 cut(s) 11, 457, 768
HpaII CCGG 2 cut(s) 302, 506
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 1 cut(s) 678
Hpy188I TCNGA 1 cut(s) 648
Hpy188III TCNNGA 6 cut(s) 190, 438, 521, 599, 695, 736
Hpy8I GTNNAC 1 cut(s) 678
HpyAV CCTTC 6 cut(s) 59, 229, 266, 331, 758, 784
HpyCH4III ACNGT 2 cut(s) 587, 845
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 4 cut(s) 130, 179, 284, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 329
HpyF3I CTNAG 2 cut(s) 567, 609
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 7 cut(s) 22, 391, 524, 550, 608, 673, 706
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 2 cut(s) 225, 637
LguI GCTCTTC 1 cut(s) 408
Lsp1109I GCAGC 3 cut(s) 32, 296, 527
LweI GCATC 2 cut(s) 580, 821
MabI ACCWGGT 1 cut(s) 631
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 227, 639
MboI GATC 2 cut(s) 225, 637
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 2 cut(s) 291, 468
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 5
MnlI CCTC 9 cut(s) 30, 154, 255, 327, 416, 455, 472, 475, 726
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 5 cut(s) 119, 294, 360, 854, 868
MslI CAYNNNNRTG 2 cut(s) 545, 784
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 2 cut(s) 302, 506
MspR9I CCNGG 6 cut(s) 80, 155, 303, 310, 633, 682
MvaI CCWGG 5 cut(s) 80, 155, 310, 633, 682
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 51, 329
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 225, 637
NlaIII CATG 7 cut(s) 22, 391, 524, 550, 608, 673, 706
NlaIV GGNNCC 2 cut(s) 41, 307
NspI RCATGY 2 cut(s) 608, 706
PaeI GCATGC 1 cut(s) 706
PagI TCATGA 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 457, 768
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 3 cut(s) 47, 286, 517
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 254
Psp6I CCWGG 5 cut(s) 78, 153, 308, 631, 680
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 5 cut(s) 78, 153, 308, 631, 680
PspN4I GGNNCC 2 cut(s) 41, 307
PspPI GGNCC 1 cut(s) 306
PsrI GAACNNNNNNTAC 2 cut(s) 659, 691
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 2 cut(s) 545, 784
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 5 cut(s) 119, 294, 360, 854, 868
SatI GCNGC 3 cut(s) 46, 285, 516
Sau3AI GATC 2 cut(s) 225, 637
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 6 cut(s) 80, 155, 303, 310, 633, 682
SetI ASST 9 cut(s) 165, 257, 314, 486, 520, 634, 683, 690, 795
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 2 cut(s) 580, 821
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 545, 784
SmlI CTYRAG 2 cut(s) 67, 89
SmoI CTYRAG 2 cut(s) 67, 89
SphI GCATGC 1 cut(s) 706
Sse9I AATT 2 cut(s) 291, 468
SsiI CCGC 2 cut(s) 43, 54
SspI AATATT 1 cut(s) 354
StyD4I CCNGG 6 cut(s) 78, 153, 301, 308, 631, 680
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 587, 845
TaiI ACGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 200, 439, 460
TasI AATT 2 cut(s) 291, 468
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 457, 768
Tru1I TTAA 5 cut(s) 119, 294, 360, 854, 868
Tru9I TTAA 5 cut(s) 119, 294, 360, 854, 868
TscAI CASTG 1 cut(s) 592
TseI GCWGC 3 cut(s) 45, 284, 515
TspDTI ATGAA 3 cut(s) 137, 686, 777
TspRI CASTG 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 306
VspI ATTAAT 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 77
XceI RCATGY 2 cut(s) 608, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.