Rh2BG497900

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014530
Physical Location & Seq
Forward (+)
70349479 .. 70351577
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG497900.1

Sequence Viewer

Length: 1212 bp
ATGAGGTACACTCCACTCTGTTTGTTCTGTATATTAGCTGCAACATTAGTCCTCATCGTGATTTACTTGAAGCACAAGAAACACTTTGGCACAAGCAAGAGAAAACTACCTCCTGGGGAAATGGGGCTTCCCTGGATAGGCCAAACAATGGAGTTCTACAGAGCTCAACAGAAAAACAGTTTGTTTGATGACTTTGTTCAGCCCCGGATTGCAAAACATGGCAAAATCTTCACAACACATTTAATGGGATCACCAACTGTGATTGTGAATGGAGCCAATGCTAACAGATTCCTGTTGTCCAATGAGTTCAAGCTGGTGATAAGTTCGTGGCCTTCAGCATCGGTTCAGCTTATGGGGAAGGACTCCATCATGGAAAAGCAAGGGGAGAGGCACCGCTGCCTTCGTGGGCTTATAGGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACGTTAGTGCCTAAAATATGTAACTTAATGAAGTTGCACTTGGACACAAAATGGAAAGGCCAGGATGAGATCAGCCTGTATCATGCAACGAAAGTCTTGACTTTTTCGATAGTGTTTGAGTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACATTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATTTTCCGGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAAGGAGATTGAGAAAATACTGGTTAAAGTAGTAAGAGAGAAGAAGAAGCACATGGAAGAAAGCAAGAAAGAAGAAGAAGAGCAAGGAGGGATGTTGGTGTCTAGATTAGTGGCTGGGATGATTCGAGGAGAAATTACCGAAGAGGAGGTTGTTGATAATGTGGTCTTGCTGGTGTTCGCAGCTCATGATACTACTTCTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGTTTCCTACTTAAAGAACATGCTGAGATAATGAGAAGCAAAAAACCTGGTGATCAAAATCTGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGCTCGTGAAAGCATGCGTCTCTTCCCTCCTATCTTCGGCTCTTTCAGGAAAGCCATTGTTGATATTGAATATGAAGGATTCACTATTCCACAAGGATGGAAGGTACATATGTTTTCTGCTATAGACATTACTATTTTAGTTAGATGCTTTACTCACAGTTTTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

403

Amino Acids

45.83

Weight (kDa)

9.37

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 384 1.3e-33 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1027
AccB1I GGYRCC 1 cut(s) 390
AccB7I CCANNNNNTGG 2 cut(s) 148, 666
AciI CCGC 1 cut(s) 394
AclWI GGATC 2 cut(s) 256, 584
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 3 cut(s) 8, 1028, 1146
AfiI CCNNNNNNNGG 5 cut(s) 137, 148, 430, 666, 1076
AgsI TTSAA 4 cut(s) 70, 310, 907, 1109
AjnI CCWGG 7 cut(s) 112, 131, 429, 504, 659, 982, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 5 cut(s) 38, 164, 313, 349, 869
AluI AGCT 5 cut(s) 38, 164, 313, 349, 869
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 437, 1064
AlwI GGATC 2 cut(s) 256, 584
AoxI GGCC 4 cut(s) 139, 329, 427, 502
ApeKI GCWGC 4 cut(s) 38, 396, 635, 866
AseI ATTAAT 1 cut(s) 645
AspS9I GGNCC 1 cut(s) 657
AsuC2I CCSGG 2 cut(s) 205, 654
AsuHPI GGTGA 3 cut(s) 243, 328, 998
AvaII GGWCC 1 cut(s) 657
BaeI ACNNNNGTAYC 2 cut(s) 1136, 1169
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 166
BauI CACGAG 1 cut(s) 1044
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 25, 383, 647, 878
BccI CCATC 2 cut(s) 374, 1131
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 7 cut(s) 114, 133, 431, 506, 661, 984, 1033
BclI TGATCA 1 cut(s) 988
BcnI CCSGG 2 cut(s) 205, 654
BcoDI GTCTC 2 cut(s) 437, 1064
BfaI CTAG 1 cut(s) 789
BfmI CTRYAG 2 cut(s) 157, 1161
BfuAI ACCTGC 1 cut(s) 1027
BisI GCNGC 4 cut(s) 39, 397, 636, 867
BlpI GCTNAGC 1 cut(s) 918
BlsI GCNGC 4 cut(s) 40, 398, 637, 868
Bme1390I CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 984, 1033
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 3 cut(s) 274, 392, 658
BmrFI CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 984, 1033
BmsI GCATC 3 cut(s) 347, 931, 1175
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 918
BpuEI CTTGAG 2 cut(s) 403, 461
BpuMI CCSGG 2 cut(s) 205, 654
BsaBI GATNNNNATC 1 cut(s) 993
BsaJI CCNNGG 5 cut(s) 113, 131, 203, 424, 653
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 148, 430, 666, 1076
Bse1I ACTGG 1 cut(s) 711
Bse3DI GCAATG 1 cut(s) 891
Bse8I GATNNNNATC 1 cut(s) 993
BseBI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 984, 1033
BseDI CCNNGG 5 cut(s) 113, 131, 203, 424, 653
BseGI GGATG 6 cut(s) 514, 783, 810, 922, 1012, 1142
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 5 cut(s) 137, 148, 430, 666, 1076
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 2 cut(s) 932, 951
BseNI ACTGG 1 cut(s) 711
BseRI GAGGAG 2 cut(s) 828, 845
BseXI GCAGC 4 cut(s) 25, 383, 647, 878
BseYI CCCAGC 1 cut(s) 800
BshFI GGCC 4 cut(s) 141, 331, 429, 504
BshNI GGYRCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 2 cut(s) 205, 653
BslI CCNNNNNNNGG 5 cut(s) 137, 148, 430, 666, 1076
BsmAI GTCTC 2 cut(s) 437, 1064
BsmBI CGTCTC 2 cut(s) 437, 1064
BsnI GGCC 4 cut(s) 141, 331, 429, 504
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 4 cut(s) 248, 513, 576, 988
Bsp1720I GCTNAGC 1 cut(s) 918
BspACI CCGC 1 cut(s) 394
BspANI GGCC 4 cut(s) 141, 331, 429, 504
BspCNI CTCAG 2 cut(s) 931, 952
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 274, 392, 658
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 2 cut(s) 256, 584
BspQI GCTCTTC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 1 cut(s) 711
BssECI CCNNGG 5 cut(s) 113, 131, 203, 424, 653
BssMI GATC 4 cut(s) 248, 513, 576, 988
BssSI CACGAG 1 cut(s) 1044
BssT1I CCWWGG 1 cut(s) 424
Bst2BI CACGAG 1 cut(s) 1044
Bst2UI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 984, 1033
Bst4CI ACNGT 4 cut(s) 179, 259, 938, 1199
Bst6I CTCTTC 3 cut(s) 759, 822, 1067
BstC8I GCNNGC 2 cut(s) 672, 1055
BstDEI CTNAG 2 cut(s) 918, 960
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 6 cut(s) 514, 783, 810, 922, 1012, 1142
BstKTI GATC 4 cut(s) 251, 516, 579, 991
BstMAI GTCTC 2 cut(s) 437, 1064
BstMBI GATC 4 cut(s) 248, 513, 576, 988
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 984, 1033
BstNSI RCATGY 2 cut(s) 959, 1057
BstSCI CCNGG 9 cut(s) 112, 131, 203, 429, 504, 652, 659, 982, 1031
BstSFI CTRYAG 2 cut(s) 157, 1161
BstV1I GCAGC 4 cut(s) 25, 383, 647, 878
BstXI CCANNNNNNTGG 1 cut(s) 1137
BsuRI GGCC 4 cut(s) 141, 331, 429, 504
BtsCI GGATG 6 cut(s) 514, 783, 810, 922, 1012, 1142
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 2 cut(s) 672, 1055
CciI TCATGA 1 cut(s) 871
Cfr13I GGNCC 1 cut(s) 657
CseI GACGC 1 cut(s) 1046
CsiI ACCWGGT 1 cut(s) 982
Csp6I GTAC 3 cut(s) 7, 1027, 1145
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 9 cut(s) 218, 370, 527, 739, 872, 898, 956, 1021, 1054
CviQI GTAC 3 cut(s) 7, 1027, 1145
DdeI CTNAG 2 cut(s) 918, 960
DpnI GATC 4 cut(s) 250, 515, 578, 990
DpnII GATC 4 cut(s) 248, 513, 576, 988
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 3 cut(s) 759, 822, 1067
EarI CTCTTC 3 cut(s) 759, 822, 1067
Ecl136II GAGCTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 7 cut(s) 112, 131, 429, 504, 659, 982, 1031
EcoT14I CCWWGG 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 2 cut(s) 437, 1064
FaeI CATG 9 cut(s) 221, 373, 530, 742, 875, 901, 959, 1024, 1057
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 467, 499
FatI CATG 9 cut(s) 217, 369, 526, 738, 871, 897, 955, 1020, 1053
FauNDI CATATG 1 cut(s) 1149
FbaI TGATCA 1 cut(s) 988
Fnu4HI GCNGC 4 cut(s) 39, 397, 636, 867
FokI GGATG 6 cut(s) 521, 790, 817, 909, 1019, 1149
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 4 cut(s) 39, 397, 636, 867
FspBI CTAG 1 cut(s) 789
GluI GCNGC 4 cut(s) 39, 397, 636, 867
GsaI CCCAGC 1 cut(s) 804
HaeIII GGCC 4 cut(s) 141, 331, 429, 504
HapII CCGG 2 cut(s) 205, 653
HgaI GACGC 1 cut(s) 1046
Hin1II CATG 9 cut(s) 221, 373, 530, 742, 875, 901, 959, 1024, 1057
HinfI GANTC 4 cut(s) 288, 362, 808, 1119
HpaII CCGG 2 cut(s) 205, 653
HphI GGTGA 3 cut(s) 243, 328, 998
Hpy166II GTNNAC 2 cut(s) 9, 1029
Hpy188I TCNGA 1 cut(s) 999
Hpy188III TCNNGA 6 cut(s) 58, 541, 789, 872, 1046, 1087
Hpy8I GTNNAC 2 cut(s) 9, 1029
HpyAV CCTTC 8 cut(s) 342, 352, 410, 580, 617, 682, 1109, 1135
HpyCH4III ACNGT 4 cut(s) 179, 259, 938, 1199
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 5 cut(s) 41, 212, 481, 530, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 2 cut(s) 918, 960
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 9 cut(s) 221, 373, 530, 742, 875, 901, 959, 1024, 1057
Ksp22I TGATCA 1 cut(s) 988
Kzo9I GATC 4 cut(s) 248, 513, 576, 988
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 4 cut(s) 25, 383, 647, 878
LweI GCATC 3 cut(s) 347, 931, 1175
MabI ACCWGGT 1 cut(s) 982
MaeI CTAG 1 cut(s) 789
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 464
MalI GATC 4 cut(s) 250, 515, 578, 990
MboI GATC 4 cut(s) 248, 513, 576, 988
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 3 cut(s) 642, 646, 819
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 356
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 6 cut(s) 242, 470, 645, 711, 948, 1210
MslI CAYNNNNRTG 2 cut(s) 896, 1135
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 2 cut(s) 205, 653
MspR9I CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 984, 1033
MvaI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 984, 1033
MwoI GCNNNNNNNGC 1 cut(s) 680
NciI CCSGG 2 cut(s) 205, 654
NdeI CATATG 1 cut(s) 1149
NdeII GATC 4 cut(s) 248, 513, 576, 988
NlaIII CATG 9 cut(s) 221, 373, 530, 742, 875, 901, 959, 1024, 1057
NlaIV GGNNCC 3 cut(s) 274, 392, 658
NspI RCATGY 2 cut(s) 959, 1057
PaeI GCATGC 1 cut(s) 1057
PagI TCATGA 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 759
PfeI GAWTC 3 cut(s) 288, 808, 1119
PflMI CCANNNNNTGG 2 cut(s) 148, 666
PkrI GCNGC 4 cut(s) 40, 398, 637, 868
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PshBI ATTAAT 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 166
Psp6I CCWGG 7 cut(s) 112, 131, 429, 504, 659, 982, 1031
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 7 cut(s) 112, 131, 429, 504, 659, 982, 1031
PspN4I GGNNCC 3 cut(s) 274, 392, 658
PspPI GGNCC 1 cut(s) 657
PsrI GAACNNNNNNTAC 2 cut(s) 1010, 1042
RsaI GTAC 3 cut(s) 8, 1028, 1146
RsaNI GTAC 3 cut(s) 7, 1027, 1145
RseI CAYNNNNRTG 2 cut(s) 896, 1135
SacI GAGCTC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 6 cut(s) 242, 470, 645, 711, 948, 1210
SatI GCNGC 4 cut(s) 39, 397, 636, 867
Sau3AI GATC 4 cut(s) 248, 513, 576, 988
Sau96I GGNCC 1 cut(s) 657
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 984, 1033
SduI GDGCHC 1 cut(s) 166
SexAI ACCWGGT 1 cut(s) 982
SfaNI GCATC 3 cut(s) 347, 931, 1175
SfcI CTRYAG 2 cut(s) 157, 1161
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 896, 1135
SmlI CTYRAG 2 cut(s) 418, 440
SmoI CTYRAG 2 cut(s) 418, 440
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 3 cut(s) 642, 646, 819
SsiI CCGC 1 cut(s) 394
SspMI CTAG 1 cut(s) 789
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 9 cut(s) 112, 131, 203, 429, 504, 652, 659, 982, 1031
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 4 cut(s) 179, 259, 938, 1199
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 551, 811
TasI AATT 3 cut(s) 642, 646, 819
TatI WGTACW 1 cut(s) 1026
TfiI GAWTC 3 cut(s) 288, 808, 1119
Tru1I TTAA 6 cut(s) 242, 470, 645, 711, 948, 1210
Tru9I TTAA 6 cut(s) 242, 470, 645, 711, 948, 1210
TseI GCWGC 4 cut(s) 38, 396, 635, 866
TspDTI ATGAA 3 cut(s) 488, 1037, 1128
Van91I CCANNNNNTGG 2 cut(s) 148, 666
VpaK11BI GGWCC 1 cut(s) 657
VspI ATTAAT 1 cut(s) 645
XagI CCTNNNNNAGG 1 cut(s) 428
XbaI TCTAGA 1 cut(s) 788
XceI RCATGY 2 cut(s) 959, 1057
XspI CTAG 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.