Rw2G039800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014530
Physical Location & Seq
Forward (+)
65294780 .. 65296405
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039800.1

Sequence Viewer

Length: 1434 bp
ATGGCTACTGAAATGAGGTACACTCCACTCTGTTTGTTCTGTATATTAGCTGCAACATTAGTCCTCATCGTGATTTACTTGAAGCACAAGAAACACTTTGGCACAAGCAAGAGAAAACTACCTCCTGGGGAAATGGGGCTTCCCTGGATAGGCCAAACAATGGAGTTCTACAGAGCTCAACAGAAAATCAGTTTGTTCGATGACTTTGTTCAGCCCCGGATTGCAAAACATGGCAAAATCTTCACAACACATTTAATGGGATCACCAACTGTGATTGTGAATGGAACCAATGCTAACAGATTCCTGTTGTCCAATGAGTTCAAGCTGGTGATAAGTTCGTGGCCTTCAGCATCGCAAGGGGAGAGCCACCGCTGCCTTCGCGGGCTTATAGGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACTTTAGTGCCTAAAATATGTAACTTAATGAAGTTGCACTTGGACACAAAATGTAAAGGCCAGGATGAGATCCGCCTGTATCATGCAACGAAAGTCTTGACTTTTTCGATAGTGTTTGAGTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACATTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATTTTCCGGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAATGAGATTGAGAAAATACTGGTTAAAGTAGTAAGAGAGAAGAAGAAGCACATGGAAGAAAGCAAGAAAGAAGAAGAAGAGCAAGGAGGGATGTTGGTGTCTCGATTAGTGGCTGGGATGATTCGAGGAGAAATTACCGAAGAGGAGGTTGTTGATAATGTGGTCTTGCTGGTGTTCGCAGCTCATGATACTACTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGTTTCTTACTTAAAGGATTGTATGCTCTTCAATTCAAACATGCTGAGATAATGAGAAGCAAAAAACCTGGTGATCAAAATCTGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGATCGCGAAAGCATGCGTCTCTTCCCTCCTATCTTCGGCTCTTTCAGGAAAGCCATTGCTGATATTGAATATGAAGGATTCACTATTCCACAAGGATGGAAGGTGTTGTGGACAATATATGGAACACATTACAATTCAGAATATTTTGAAGATCCTTCGAGTTTCAATCCAAGCCGGTTTGAGGAGCATGTTCCACCATATGCCTTTCTGGCATTCGGAGGAGGGCCAAGAGTTTGTGCAGGGTACCAACTTGCTAAGCTGAACGTCCTCATTTTCGTGCATTTCATCGTGACTCGTTATGACTGGTCTTTGCTATATCCTGATGAGCCTATATCCATGGATCCTCTTCCATTTCCTTCATATGGAATGCCTATAAAAATTACTCCAAAGTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

477

Amino Acids

54.43

Weight (kDa)

9.02

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 41 - 461 1.5e-46 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1021
Acc65I GGTACC 1 cut(s) 1278
AccB1I GGYRCC 1 cut(s) 1278
AccB7I CCANNNNNTGG 2 cut(s) 160, 642
AccII CGCG 2 cut(s) 381, 1041
AciI CCGC 3 cut(s) 370, 381, 493
AclWI GGATC 6 cut(s) 268, 484, 560, 1181, 1370, 1383
AcoI YGGCCR 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 20, 1022, 1280
AfiI CCNNNNNNNGG 7 cut(s) 149, 160, 406, 642, 1070, 1216, 1397
AgsI TTSAA 8 cut(s) 82, 322, 880, 941, 946, 1103, 1184, 1201
AjnI CCWGG 7 cut(s) 124, 143, 405, 480, 635, 976, 1025
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 5 cut(s) 50, 176, 325, 845, 1294
AluI AGCT 5 cut(s) 50, 176, 325, 845, 1294
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 3 cut(s) 413, 768, 1058
AlwI GGATC 6 cut(s) 268, 484, 560, 1181, 1370, 1383
AoxI GGCC 5 cut(s) 151, 341, 403, 478, 1259
ApeKI GCWGC 4 cut(s) 50, 372, 611, 842
AseI ATTAAT 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 1278
AspS9I GGNCC 2 cut(s) 633, 1259
AsuC2I CCSGG 2 cut(s) 217, 630
AsuHPI GGTGA 3 cut(s) 255, 340, 992
AvaII GGWCC 1 cut(s) 633
BalI TGGCCA 1 cut(s) 405
BamHI GGATCC 1 cut(s) 1375
BanI GGYRCC 1 cut(s) 1278
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 37, 359, 623, 854
BccI CCATC 1 cut(s) 1125
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 7 cut(s) 126, 145, 407, 482, 637, 978, 1027
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 2 cut(s) 217, 630
BcoDI GTCTC 3 cut(s) 413, 768, 1058
BfmI CTRYAG 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 1021
BglI GCCNNNNNGGC 1 cut(s) 1244
BisI GCNGC 4 cut(s) 51, 373, 612, 843
BlpI GCTNAGC 2 cut(s) 891, 1290
BlsI GCNGC 4 cut(s) 52, 374, 613, 844
Bme1390I CCNGG 9 cut(s) 126, 145, 217, 407, 482, 630, 637, 978, 1027
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 633, 1259
BmiI GGNNCC 4 cut(s) 286, 634, 1280, 1377
BmrFI CCNGG 9 cut(s) 126, 145, 217, 407, 482, 630, 637, 978, 1027
BmsI GCATC 2 cut(s) 359, 904
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu1102I GCTNAGC 2 cut(s) 891, 1290
BpuEI CTTGAG 2 cut(s) 379, 437
BpuMI CCSGG 2 cut(s) 217, 630
BsaBI GATNNNNATC 1 cut(s) 987
BsaJI CCNNGG 6 cut(s) 125, 143, 215, 400, 629, 1371
Bsc4I CCNNNNNNNGG 7 cut(s) 149, 160, 406, 642, 1070, 1216, 1397
Bse118I RCCGGY 1 cut(s) 1209
Bse1I ACTGG 2 cut(s) 687, 1343
Bse3DI GCAATG 2 cut(s) 864, 1089
Bse8I GATNNNNATC 1 cut(s) 987
BseBI CCWGG 7 cut(s) 126, 145, 407, 482, 637, 978, 1027
BseDI CCNNGG 6 cut(s) 125, 143, 215, 400, 629, 1371
BseGI GGATG 6 cut(s) 490, 759, 786, 895, 1006, 1136
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 7 cut(s) 149, 160, 406, 642, 1070, 1216, 1397
BseMI GCAATG 2 cut(s) 864, 1089
BseMII CTCAG 2 cut(s) 905, 945
BseNI ACTGG 2 cut(s) 687, 1343
BseRI GAGGAG 4 cut(s) 804, 821, 1232, 1269
BseXI GCAGC 4 cut(s) 37, 359, 623, 854
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 1 cut(s) 1293
Bsh1236I CGCG 2 cut(s) 381, 1041
BshFI GGCC 5 cut(s) 153, 343, 405, 480, 1261
BshNI GGYRCC 1 cut(s) 1278
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 3 cut(s) 217, 629, 1210
BslI CCNNNNNNNGG 7 cut(s) 149, 160, 406, 642, 1070, 1216, 1397
BsmAI GTCTC 3 cut(s) 413, 768, 1058
BsmBI CGTCTC 1 cut(s) 1058
BsmI GAATGC 2 cut(s) 1247, 1407
BsnI GGCC 5 cut(s) 153, 343, 405, 480, 1261
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
Bsp1720I GCTNAGC 2 cut(s) 891, 1290
Bsp19I CCATGG 1 cut(s) 1371
Bsp68I TCGCGA 1 cut(s) 1041
BspACI CCGC 3 cut(s) 370, 381, 493
BspANI GGCC 5 cut(s) 153, 343, 405, 480, 1261
BspCNI CTCAG 2 cut(s) 904, 946
BspFNI CGCG 2 cut(s) 381, 1041
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 4 cut(s) 286, 634, 1280, 1377
BspMI ACCTGC 1 cut(s) 1021
BspPI GGATC 6 cut(s) 268, 484, 560, 1181, 1370, 1383
BspQI GCTCTTC 2 cut(s) 735, 942
BspT107I GGYRCC 1 cut(s) 1278
BsrDI GCAATG 2 cut(s) 864, 1089
BsrFI RCCGGY 1 cut(s) 1209
BsrI ACTGG 2 cut(s) 687, 1343
BssAI RCCGGY 1 cut(s) 1209
BssECI CCNNGG 6 cut(s) 125, 143, 215, 400, 629, 1371
BssMI GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
BssT1I CCWWGG 2 cut(s) 400, 1371
Bst2UI CCWGG 7 cut(s) 126, 145, 407, 482, 637, 978, 1027
Bst4CI ACNGT 2 cut(s) 271, 911
Bst6I CTCTTC 5 cut(s) 735, 798, 942, 1061, 1386
BstC8I GCNNGC 3 cut(s) 383, 648, 1049
BstDEI CTNAG 3 cut(s) 891, 954, 1290
BstDSI CCRYGG 1 cut(s) 1371
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 6 cut(s) 490, 759, 786, 895, 1006, 1136
BstFNI CGCG 2 cut(s) 381, 1041
BstKTI GATC 7 cut(s) 263, 492, 555, 985, 1039, 1189, 1378
BstMAI GTCTC 3 cut(s) 413, 768, 1058
BstMBI GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
BstMWI GCNNNNNNNGC 4 cut(s) 372, 378, 656, 1244
BstNI CCWGG 7 cut(s) 126, 145, 407, 482, 637, 978, 1027
BstNSI RCATGY 3 cut(s) 953, 1051, 1226
BstSCI CCNGG 9 cut(s) 124, 143, 215, 405, 480, 628, 635, 976, 1025
BstSFI CTRYAG 1 cut(s) 169
BstUI CGCG 2 cut(s) 381, 1041
BstV1I GCAGC 4 cut(s) 37, 359, 623, 854
BstX2I RGATCY 3 cut(s) 489, 1186, 1375
BstXI CCANNNNNNTGG 1 cut(s) 1131
BstYI RGATCY 3 cut(s) 489, 1186, 1375
BsuRI GGCC 5 cut(s) 153, 343, 405, 480, 1261
BtgI CCRYGG 1 cut(s) 1371
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 6 cut(s) 490, 759, 786, 895, 1006, 1136
BtuMI TCGCGA 1 cut(s) 1041
BveI ACCTGC 1 cut(s) 1021
Cac8I GCNNGC 3 cut(s) 383, 648, 1049
CciI TCATGA 1 cut(s) 847
Cfr10I RCCGGY 1 cut(s) 1209
Cfr13I GGNCC 2 cut(s) 633, 1259
CseI GACGC 1 cut(s) 1040
CsiI ACCWGGT 1 cut(s) 976
Csp6I GTAC 3 cut(s) 19, 1021, 1279
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviQI GTAC 3 cut(s) 19, 1021, 1279
DdeI CTNAG 3 cut(s) 891, 954, 1290
DpnI GATC 7 cut(s) 262, 491, 554, 984, 1038, 1188, 1377
DpnII GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 5 cut(s) 735, 798, 942, 1061, 1386
EarI CTCTTC 5 cut(s) 735, 798, 942, 1061, 1386
EciI GGCGGA 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 400, 1371
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 633
Eco53kI GAGCTC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoRII CCWGG 7 cut(s) 124, 143, 405, 480, 635, 976, 1025
EcoT14I CCWWGG 2 cut(s) 400, 1371
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 400, 1371
Esp3I CGTCTC 1 cut(s) 1058
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 443, 475
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 2 cut(s) 1234, 1396
FbaI TGATCA 1 cut(s) 982
Fnu4HI GCNGC 4 cut(s) 51, 373, 612, 843
FokI GGATG 6 cut(s) 497, 766, 793, 882, 1013, 1143
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 4 cut(s) 51, 373, 612, 843
GluI GCNGC 4 cut(s) 51, 373, 612, 843
GsaI CCCAGC 1 cut(s) 780
HaeIII GGCC 5 cut(s) 153, 343, 405, 480, 1261
HapII CCGG 3 cut(s) 217, 629, 1210
HgaI GACGC 1 cut(s) 1040
HinfI GANTC 4 cut(s) 300, 784, 1113, 1327
HpaII CCGG 3 cut(s) 217, 629, 1210
HphI GGTGA 3 cut(s) 255, 340, 992
Hpy166II GTNNAC 3 cut(s) 21, 1023, 1146
Hpy188I TCNGA 3 cut(s) 993, 1174, 1253
Hpy188III TCNNGA 8 cut(s) 70, 517, 765, 848, 1040, 1081, 1324, 1355
Hpy8I GTNNAC 3 cut(s) 21, 1023, 1146
HpyAV CCTTC 8 cut(s) 354, 386, 556, 593, 1103, 1129, 1200, 1401
HpyCH4III ACNGT 2 cut(s) 271, 911
HpyCH4IV ACGT 1 cut(s) 1299
HpyCH4V TGCA 7 cut(s) 53, 224, 457, 506, 611, 1274, 1315
HpyF10VI GCNNNNNNNGC 4 cut(s) 372, 378, 656, 1244
HpyF3I CTNAG 3 cut(s) 891, 954, 1290
HpySE526I ACGT 1 cut(s) 1299
KpnI GGTACC 1 cut(s) 1282
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
LguI GCTCTTC 2 cut(s) 735, 942
LmnI GCTCC 1 cut(s) 1219
Lsp1109I GCAGC 4 cut(s) 37, 359, 623, 854
LweI GCATC 2 cut(s) 359, 904
MabI ACCWGGT 1 cut(s) 976
MaeII ACGT 1 cut(s) 1299
MaeIII GTNAC 2 cut(s) 440, 1324
MalI GATC 7 cut(s) 262, 491, 554, 984, 1038, 1188, 1377
MboI GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
MflI RGATCY 3 cut(s) 489, 1186, 1375
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 6 cut(s) 618, 622, 795, 941, 1168, 1413
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 1321
Mox20I TGGCCA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 405
MseI TTAA 5 cut(s) 254, 446, 621, 687, 921
MslI CAYNNNNRTG 3 cut(s) 869, 1129, 1310
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 3 cut(s) 217, 629, 1210
MspR9I CCNGG 9 cut(s) 126, 145, 217, 407, 482, 630, 637, 978, 1027
Mva1269I GAATGC 2 cut(s) 1247, 1407
MvaI CCWGG 7 cut(s) 126, 145, 407, 482, 637, 978, 1027
MvnI CGCG 2 cut(s) 381, 1041
MwoI GCNNNNNNNGC 4 cut(s) 372, 378, 656, 1244
NciI CCSGG 2 cut(s) 217, 630
NcoI CCATGG 1 cut(s) 1371
NdeI CATATG 2 cut(s) 1234, 1396
NdeII GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
NlaIV GGNNCC 4 cut(s) 286, 634, 1280, 1377
NmuCI GTSAC 1 cut(s) 1324
NruI TCGCGA 1 cut(s) 1041
NspI RCATGY 3 cut(s) 953, 1051, 1226
PaeI GCATGC 1 cut(s) 1051
PagI TCATGA 1 cut(s) 847
PciSI GCTCTTC 2 cut(s) 735, 942
PctI GAATGC 2 cut(s) 1247, 1407
PfeI GAWTC 3 cut(s) 300, 784, 1113
PflMI CCANNNNNTGG 2 cut(s) 160, 642
PkrI GCNGC 4 cut(s) 52, 374, 613, 844
PleI GAGTC 1 cut(s) 1321
PpsI GAGTC 1 cut(s) 1321
PshBI ATTAAT 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 7 cut(s) 124, 143, 405, 480, 635, 976, 1025
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 7 cut(s) 124, 143, 405, 480, 635, 976, 1025
PspN4I GGNNCC 4 cut(s) 286, 634, 1280, 1377
PspPI GGNCC 2 cut(s) 633, 1259
PsrI GAACNNNNNNTAC 2 cut(s) 1004, 1036
PsuI RGATCY 3 cut(s) 489, 1186, 1375
RruI TCGCGA 1 cut(s) 1041
RsaI GTAC 3 cut(s) 20, 1022, 1280
RsaNI GTAC 3 cut(s) 19, 1021, 1279
RseI CAYNNNNRTG 3 cut(s) 869, 1129, 1310
SacI GAGCTC 1 cut(s) 178
SapI GCTCTTC 2 cut(s) 735, 942
SaqAI TTAA 5 cut(s) 254, 446, 621, 687, 921
SatI GCNGC 4 cut(s) 51, 373, 612, 843
Sau3AI GATC 7 cut(s) 260, 489, 552, 982, 1036, 1186, 1375
Sau96I GGNCC 2 cut(s) 633, 1259
SchI GAGTC 1 cut(s) 1321
ScrFI CCNGG 9 cut(s) 126, 145, 217, 407, 482, 630, 637, 978, 1027
SduI GDGCHC 1 cut(s) 178
SexAI ACCWGGT 1 cut(s) 976
SfaNI GCATC 2 cut(s) 359, 904
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 3 cut(s) 869, 1129, 1310
SmlI CTYRAG 2 cut(s) 394, 416
SmoI CTYRAG 2 cut(s) 394, 416
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 6 cut(s) 618, 622, 795, 941, 1168, 1413
SsiI CCGC 3 cut(s) 370, 381, 493
SspI AATATT 1 cut(s) 1178
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 9 cut(s) 124, 143, 215, 405, 480, 628, 635, 976, 1025
StyI CCWWGG 2 cut(s) 400, 1371
TaaI ACNGT 2 cut(s) 271, 911
TaiI ACGT 1 cut(s) 1302
TaqI TCGA 5 cut(s) 198, 527, 766, 787, 1193
TasI AATT 6 cut(s) 618, 622, 795, 941, 1168, 1413
TatI WGTACW 1 cut(s) 1020
TfiI GAWTC 3 cut(s) 300, 784, 1113
Tru1I TTAA 5 cut(s) 254, 446, 621, 687, 921
Tru9I TTAA 5 cut(s) 254, 446, 621, 687, 921
TseFI GTSAC 1 cut(s) 1324
TseI GCWGC 4 cut(s) 50, 372, 611, 842
Tsp45I GTSAC 1 cut(s) 1324
TspDTI ATGAA 5 cut(s) 464, 1031, 1122, 1309, 1383
Van91I CCANNNNNTGG 2 cut(s) 160, 642
VpaK11BI GGWCC 1 cut(s) 633
VspI ATTAAT 1 cut(s) 621
XagI CCTNNNNNAGG 1 cut(s) 404
XceI RCATGY 3 cut(s) 953, 1051, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.