Rroxscaffold_2G00096680

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014530
Physical Location & Seq
Reverse (-)
18011089 .. 18012387
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096680.1

Sequence Viewer

Length: 1113 bp
ATGACTTTGTTCAGCCCCGGATTGCAAAATATGGCAAAATCTTCAACACATCTAATGGGATCACCAACTGTGATTGTGAATGGAGCCAATGCTAACAGATTCCTGTTGTCCAATGAGTTCAAGCAGGTGATAAGTTCGTGGCCTTCAGCATCGGTTCAGCTTATGGGGAAGGACTCCATCATGGAAAAGCAAGGGGAGAGGCACCGCTGCCTTCGCAGGCTTATAGGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACTTTAGTGCCTAAAATATGTAACTTAATGAAGTTGTACTTGGACACAAAATGGAAAGGCCAGGATGAGATCAGCCTGTATTGTGCAACGAAAGTCTTGACTTTTTCGATAGTGTTTGAGTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACGTTTAAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATTTTCCGGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAAGGAGATTGAGAAAATACTGGTTAAAGTAGTAAGAGAGAAGAAGAAGTACATGGAAGAAAGCAAGAAAGAAGAAGAAGAGCAGGGAGGGATGTTGCTGTCTCGATTAGTGGCTGGGATGATTCGAGGAGAAATTACCGAAGAGGAGGTTGTTGACAATGTGGTCTTGCTGGTGTTTGCAGCTCATGATACTACTTCTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGTGTCCTACTTAAAGAACATGCTGAGATAATGAGAAGCAAAAAACCTGGTGATCAAAATCTGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGCTCGCGAAAGCATCCGTCTCTTCCCTCCTTCTTCGGCTCTTTCAGGAAAGCCATTGCTGATATTGAATTTGAAGGATTCACTATTCCACAAGGATGGAAGGTGTTGTGGACAACATATGGAACACATTACAATTCAGAATATTTTGAAGATCCTTCGAGTTTCAATCCAAGCCGGTTTGAGGAGCATGTTCCACCATATGCCTTTCTGGCATTCGGAGGAGGGCCAAGAGTTTGTACAGGGTACCAACTTGCCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

370

Amino Acids

41.81

Weight (kDa)

9.25

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 17 - 296 6.7e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
AasI GACNNNNNNGTC 1 cut(s) 659
Acc36I ACCTGC 2 cut(s) 115, 838
Acc65I GGTACC 1 cut(s) 1094
AccB1I GGYRCC 2 cut(s) 201, 1094
AccB7I CCANNNNNTGG 1 cut(s) 477
AccII CGCG 1 cut(s) 858
AciI CCGC 1 cut(s) 205
AclI AACGTT 1 cut(s) 416
AclWI GGATC 3 cut(s) 67, 395, 997
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 5 cut(s) 293, 548, 839, 1089, 1096
AfiI CCNNNNNNNGG 3 cut(s) 241, 477, 1032
AgsI TTSAA 7 cut(s) 45, 121, 718, 919, 925, 1000, 1017
AjnI CCWGG 5 cut(s) 240, 315, 470, 793, 842
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 160, 680, 1110
AluI AGCT 3 cut(s) 160, 680, 1110
Alw26I GTCTC 3 cut(s) 248, 603, 875
AlwI GGATC 3 cut(s) 67, 395, 997
AoxI GGCC 4 cut(s) 140, 238, 313, 1075
ApeKI GCWGC 3 cut(s) 207, 446, 677
ApoI RAATTY 1 cut(s) 919
AseI ATTAAT 1 cut(s) 456
Asp718I GGTACC 1 cut(s) 1094
AspS9I GGNCC 2 cut(s) 468, 1075
AsuC2I CCSGG 2 cut(s) 18, 465
AsuHPI GGTGA 3 cut(s) 54, 139, 809
AvaII GGWCC 1 cut(s) 468
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 2 cut(s) 201, 1094
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BbvI GCAGC 3 cut(s) 194, 458, 689
BccI CCATC 2 cut(s) 185, 941
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 5 cut(s) 242, 317, 472, 795, 844
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 2 cut(s) 18, 465
BcoDI GTCTC 3 cut(s) 248, 603, 875
BfuAI ACCTGC 2 cut(s) 115, 838
BglI GCCNNNNNGGC 1 cut(s) 1060
BisI GCNGC 3 cut(s) 208, 447, 678
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 3 cut(s) 209, 448, 679
Bme1390I CCNGG 7 cut(s) 18, 242, 317, 465, 472, 795, 844
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 2 cut(s) 468, 1075
BmiI GGNNCC 4 cut(s) 85, 203, 469, 1096
BmrFI CCNGG 7 cut(s) 18, 242, 317, 465, 472, 795, 844
BmsI GCATC 3 cut(s) 158, 742, 873
Bpu1102I GCTNAGC 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 214, 272
BpuMI CCSGG 2 cut(s) 18, 465
BsaBI GATNNNNATC 1 cut(s) 804
BsaJI CCNNGG 3 cut(s) 16, 235, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 477, 1032
Bse118I RCCGGY 1 cut(s) 1025
Bse1I ACTGG 1 cut(s) 522
Bse3DI GCAATG 2 cut(s) 702, 905
Bse8I GATNNNNATC 1 cut(s) 804
BseBI CCWGG 5 cut(s) 242, 317, 472, 795, 844
BseDI CCNNGG 3 cut(s) 16, 235, 464
BseGI GGATG 7 cut(s) 325, 594, 621, 733, 823, 864, 952
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 3 cut(s) 241, 477, 1032
BseMI GCAATG 2 cut(s) 702, 905
BseMII CTCAG 2 cut(s) 743, 762
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 4 cut(s) 639, 656, 1048, 1085
BseXI GCAGC 3 cut(s) 194, 458, 689
BseYI CCCAGC 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 858
BshFI GGCC 4 cut(s) 142, 240, 315, 1077
BshNI GGYRCC 2 cut(s) 201, 1094
BsiSI CCGG 3 cut(s) 18, 464, 1026
BslI CCNNNNNNNGG 3 cut(s) 241, 477, 1032
BsmAI GTCTC 3 cut(s) 248, 603, 875
BsmBI CGTCTC 1 cut(s) 875
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 4 cut(s) 142, 240, 315, 1077
Bsp1407I TGTACA 1 cut(s) 1087
Bsp143I GATC 5 cut(s) 59, 324, 387, 799, 1002
Bsp1720I GCTNAGC 1 cut(s) 729
Bsp68I TCGCGA 1 cut(s) 858
BspACI CCGC 1 cut(s) 205
BspANI GGCC 4 cut(s) 142, 240, 315, 1077
BspCNI CTCAG 2 cut(s) 742, 763
BspFNI CGCG 1 cut(s) 858
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 4 cut(s) 85, 203, 469, 1096
BspMI ACCTGC 2 cut(s) 115, 838
BspPI GGATC 3 cut(s) 67, 395, 997
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 2 cut(s) 201, 1094
BsrDI GCAATG 2 cut(s) 702, 905
BsrFI RCCGGY 1 cut(s) 1025
BsrGI TGTACA 1 cut(s) 1087
BsrI ACTGG 1 cut(s) 522
BssAI RCCGGY 1 cut(s) 1025
BssECI CCNNGG 3 cut(s) 16, 235, 464
BssMI GATC 5 cut(s) 59, 324, 387, 799, 1002
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 5 cut(s) 242, 317, 472, 795, 844
Bst4CI ACNGT 2 cut(s) 70, 749
Bst6I CTCTTC 3 cut(s) 570, 633, 878
BstAUI TGTACA 1 cut(s) 1087
BstC8I GCNNGC 3 cut(s) 218, 483, 856
BstDEI CTNAG 2 cut(s) 729, 771
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 7 cut(s) 325, 594, 621, 733, 823, 864, 952
BstFNI CGCG 1 cut(s) 858
BstKTI GATC 5 cut(s) 62, 327, 390, 802, 1005
BstMAI GTCTC 3 cut(s) 248, 603, 875
BstMBI GATC 5 cut(s) 59, 324, 387, 799, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 213, 491, 1060
BstNI CCWGG 5 cut(s) 242, 317, 472, 795, 844
BstNSI RCATGY 2 cut(s) 770, 1042
BstSCI CCNGG 7 cut(s) 16, 240, 315, 463, 470, 793, 842
BstUI CGCG 1 cut(s) 858
BstV1I GCAGC 3 cut(s) 194, 458, 689
BstX2I RGATCY 1 cut(s) 1002
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 1002
BsuRI GGCC 4 cut(s) 142, 240, 315, 1077
BtsCI GGATG 7 cut(s) 325, 594, 621, 733, 823, 864, 952
BtsIMutI CAGTG 1 cut(s) 754
BtuMI TCGCGA 1 cut(s) 858
BveI ACCTGC 2 cut(s) 115, 838
Cac8I GCNNGC 3 cut(s) 218, 483, 856
CciI TCATGA 1 cut(s) 682
Cfr10I RCCGGY 1 cut(s) 1025
Cfr13I GGNCC 2 cut(s) 468, 1075
CsiI ACCWGGT 1 cut(s) 793
Csp6I GTAC 5 cut(s) 292, 547, 838, 1088, 1095
CviAII CATG 7 cut(s) 181, 550, 683, 709, 767, 832, 1039
CviQI GTAC 5 cut(s) 292, 547, 838, 1088, 1095
DdeI CTNAG 2 cut(s) 729, 771
DpnI GATC 5 cut(s) 61, 326, 389, 801, 1004
DpnII GATC 5 cut(s) 59, 324, 387, 799, 1002
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 3 cut(s) 570, 633, 878
EarI CTCTTC 3 cut(s) 570, 633, 878
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoRII CCWGG 5 cut(s) 240, 315, 470, 793, 842
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 875
FaeI CATG 7 cut(s) 184, 553, 686, 712, 770, 835, 1042
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 7 cut(s) 180, 549, 682, 708, 766, 831, 1038
FauNDI CATATG 2 cut(s) 969, 1050
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 3 cut(s) 208, 447, 678
FokI GGATG 7 cut(s) 332, 601, 628, 720, 830, 851, 959
Fsp4HI GCNGC 3 cut(s) 208, 447, 678
GluI GCNGC 3 cut(s) 208, 447, 678
GsaI CCCAGC 1 cut(s) 615
HaeIII GGCC 4 cut(s) 142, 240, 315, 1077
HapII CCGG 3 cut(s) 18, 464, 1026
Hin1II CATG 7 cut(s) 184, 553, 686, 712, 770, 835, 1042
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 4 cut(s) 99, 173, 619, 929
HpaII CCGG 3 cut(s) 18, 464, 1026
HphI GGTGA 3 cut(s) 54, 139, 809
Hpy166II GTNNAC 3 cut(s) 652, 840, 962
Hpy188I TCNGA 3 cut(s) 810, 990, 1069
Hpy188III TCNNGA 5 cut(s) 352, 600, 683, 857, 897
Hpy8I GTNNAC 3 cut(s) 652, 840, 962
HpyCH4III ACNGT 2 cut(s) 70, 749
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 4 cut(s) 25, 341, 446, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 491, 1060
HpyF3I CTNAG 2 cut(s) 729, 771
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 7 cut(s) 184, 553, 686, 712, 770, 835, 1042
KpnI GGTACC 1 cut(s) 1098
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 5 cut(s) 59, 324, 387, 799, 1002
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 83, 1035
Lsp1109I GCAGC 3 cut(s) 194, 458, 689
LweI GCATC 3 cut(s) 158, 742, 873
MabI ACCWGGT 1 cut(s) 793
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 275
MalI GATC 5 cut(s) 61, 326, 389, 801, 1004
MboI GATC 5 cut(s) 59, 324, 387, 799, 1002
MflI RGATCY 1 cut(s) 1002
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 5 cut(s) 453, 457, 630, 919, 984
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 167
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 5 cut(s) 281, 420, 456, 522, 759
MslI CAYNNNNRTG 2 cut(s) 707, 945
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 3 cut(s) 18, 464, 1026
MspR9I CCNGG 7 cut(s) 18, 242, 317, 465, 472, 795, 844
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 5 cut(s) 242, 317, 472, 795, 844
MvnI CGCG 1 cut(s) 858
MwoI GCNNNNNNNGC 3 cut(s) 213, 491, 1060
NciI CCSGG 2 cut(s) 18, 465
NdeI CATATG 2 cut(s) 969, 1050
NdeII GATC 5 cut(s) 59, 324, 387, 799, 1002
NlaIII CATG 7 cut(s) 184, 553, 686, 712, 770, 835, 1042
NlaIV GGNNCC 4 cut(s) 85, 203, 469, 1096
NruI TCGCGA 1 cut(s) 858
NspI RCATGY 2 cut(s) 770, 1042
PagI TCATGA 1 cut(s) 682
PaqCI CACCTGC 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 570
PctI GAATGC 1 cut(s) 1063
PfeI GAWTC 3 cut(s) 99, 619, 929
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 3 cut(s) 209, 448, 679
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 416
Psp6I CCWGG 5 cut(s) 240, 315, 470, 793, 842
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 5 cut(s) 240, 315, 470, 793, 842
PspN4I GGNNCC 4 cut(s) 85, 203, 469, 1096
PspPI GGNCC 2 cut(s) 468, 1075
PsrI GAACNNNNNNTAC 2 cut(s) 821, 853
PsuI RGATCY 1 cut(s) 1002
RruI TCGCGA 1 cut(s) 858
RsaI GTAC 5 cut(s) 293, 548, 839, 1089, 1096
RsaNI GTAC 5 cut(s) 292, 547, 838, 1088, 1095
RseI CAYNNNNRTG 2 cut(s) 707, 945
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 5 cut(s) 281, 420, 456, 522, 759
SatI GCNGC 3 cut(s) 208, 447, 678
Sau3AI GATC 5 cut(s) 59, 324, 387, 799, 1002
Sau96I GGNCC 2 cut(s) 468, 1075
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 7 cut(s) 18, 242, 317, 465, 472, 795, 844
SexAI ACCWGGT 1 cut(s) 793
SfaNI GCATC 3 cut(s) 158, 742, 873
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 2 cut(s) 707, 945
SmlI CTYRAG 2 cut(s) 229, 251
SmoI CTYRAG 2 cut(s) 229, 251
Sse9I AATT 5 cut(s) 453, 457, 630, 919, 984
SsiI CCGC 1 cut(s) 205
SspI AATATT 1 cut(s) 994
StyD4I CCNGG 7 cut(s) 16, 240, 315, 463, 470, 793, 842
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 70, 749
TaiI ACGT 1 cut(s) 419
TaqI TCGA 4 cut(s) 362, 601, 622, 1009
TasI AATT 5 cut(s) 453, 457, 630, 919, 984
TatI WGTACW 4 cut(s) 291, 546, 837, 1087
TfiI GAWTC 3 cut(s) 99, 619, 929
Tru1I TTAA 5 cut(s) 281, 420, 456, 522, 759
Tru9I TTAA 5 cut(s) 281, 420, 456, 522, 759
TscAI CASTG 1 cut(s) 754
TseI GCWGC 3 cut(s) 207, 446, 677
TspDTI ATGAA 2 cut(s) 299, 848
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 1 cut(s) 754
Van91I CCANNNNNTGG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 468
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 1 cut(s) 919
XceI RCATGY 2 cut(s) 770, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.