MD17G1140500.v1.1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014530
Physical Location & Seq
Reverse (-)
12624497 .. 12626016
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1140500.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGCAAATGAAATTTGCAATCATTCTTTTTGTTTGTTCTGTTTCTTAGCTGCAACGGTCTTTTTCATTGTTTTCTTAGGGCACAAGAAACGCTGTAACACGAATAAGAAAAGACTGCCACTAGGCGAAATGGGGCTTCCTTGGGTAGGCCAGACAATGGAGTTCTACAAAGCTCAACGGAAGAACAGTTTGTTTGATGATTTCGCTCAACCTCAGATTGCTAAATATGGTAAAATCTTCACAACGCATCTGATGGGATCACCAACTGTGATTGTAAATGGAGCCAATGCTAACAAGTTCCTGCTGTCCAATGAGTTCAAGTTGGTGGTGAGCTCGTGGCCTTCGGCATCAGTTCAGCTGATGGGAAAGGACTCCATCATAGAAAAGCAAGGGGAGAGGCACCGCTACCTGCGCGGACTTATTGGGGCGAGCCTTGGCCAGGAGGGGCTTGAGACGTTGGCAGAGATGTTGGGAATATTTGAGAGAGTTTTGGAAGGGGTTTTTGCAGCGCCTGTTCAAATTCCTGGTTTGAGGTTTTGGAGAGCAAAGAAAGCGAGGGTGGAGATAGAGAATATGCTGATTGAAGTAGTGAGAGAGAAGAGGATGCAAATGGAAGGCAAGATAGAAGCAGAGGAGGAGCAGGGAGGAACATTGCTTTCACAATTGGTGGCTGGAATGATTCAAGGAGAAATCACTGAGGAGAAGGTTGTTGATAATGTGGTGTTGCTTGTTTTTGCAGCTCATAATACTACTTCTTTCGCCATTGCTATGACTTTCAAAATGTTGGCTCAGCATCCTTATTGCCATAGTATTCTACTGAAAGGTGAAAATCTGACACTGGATGACACAAAGAAGATGAAGTATACCTGGCAGGTTGCGCGTGAAAGCATGCGCATATTCCCCCCAATCTTCGGCTATTTTAAGAAAGCCATCGCCGGCATTGAGTATGAAGGCTTTACCATACCTAGAGGATGGAAGTCAGTCCCACCGTATGTGTTCCTTCCATTCGGGGGAGGGCCAAGAGTGTGTGCAGGCTACCAACTGGCCAAGTTGAATATCCTTATCATCGTGCATTTCGTTGTTACGTGTTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

366

Amino Acids

41.14

Weight (kDa)

9.02

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 181 - 324 2.2e-14 Cytochrome P450
p450 PF00067 328 - 360 7.8e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 2 cut(s) 417, 862
AccB1I GGYRCC 1 cut(s) 399
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 863
AccII CGCG 2 cut(s) 414, 880
AciI CCGC 2 cut(s) 403, 414
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 2 cut(s) 436, 1044
AcsI RAATTY 2 cut(s) 12, 519
AfiI CCNNNNNNNGG 5 cut(s) 146, 157, 439, 911, 1010
AflIII ACRYGT 1 cut(s) 1085
AgsI TTSAA 6 cut(s) 319, 518, 584, 683, 778, 1054
AjnI CCWGG 3 cut(s) 438, 523, 866
AluBI AGCT 5 cut(s) 50, 173, 333, 358, 740
AluI AGCT 5 cut(s) 50, 173, 333, 358, 740
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 5 cut(s) 148, 338, 436, 1016, 1044
ApeKI GCWGC 3 cut(s) 50, 506, 737
ApoI RAATTY 2 cut(s) 12, 519
AspLEI GCGC 4 cut(s) 414, 511, 880, 894
AspS9I GGNCC 1 cut(s) 1016
AsuHPI GGTGA 3 cut(s) 252, 340, 836
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 2 cut(s) 438, 1046
BanI GGYRCC 1 cut(s) 399
BanII GRGCYC 1 cut(s) 335
BauI CACGAG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 37, 518, 749
BccI CCATC 5 cut(s) 247, 355, 383, 938, 966
BciT130I CCWGG 3 cut(s) 440, 525, 868
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 2 cut(s) 122, 966
BfoI RGCGCY 1 cut(s) 512
BfuAI ACCTGC 2 cut(s) 417, 862
BisI GCNGC 3 cut(s) 51, 507, 738
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 3 cut(s) 52, 508, 739
Bme1390I CCNGG 3 cut(s) 440, 525, 868
BmgT120I GGNCC 1 cut(s) 1016
BmiI GGNNCC 2 cut(s) 283, 401
BmrFI CCNGG 3 cut(s) 440, 525, 868
BmsI GCATC 4 cut(s) 256, 356, 594, 802
Bpu1102I GCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 470
BsaAI YACGTR 1 cut(s) 1086
BsaJI CCNNGG 2 cut(s) 140, 433
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 157, 439, 911, 1010
Bse118I RCCGGY 1 cut(s) 935
Bse1I ACTGG 2 cut(s) 843, 1047
Bse3DI GCAATG 2 cut(s) 650, 762
BseBI CCWGG 3 cut(s) 440, 525, 868
BseDI CCNNGG 2 cut(s) 140, 433
BseGI GGATG 4 cut(s) 609, 793, 847, 977
BseLI CCNNNNNNNGG 5 cut(s) 146, 157, 439, 911, 1010
BseMI GCAATG 2 cut(s) 650, 762
BseMII CTCAG 3 cut(s) 227, 687, 803
BseNI ACTGG 2 cut(s) 843, 1047
BseRI GAGGAG 3 cut(s) 647, 650, 713
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 3 cut(s) 37, 518, 749
BsgI GTGCAG 1 cut(s) 1050
Bsh1236I CGCG 2 cut(s) 414, 880
BshFI GGCC 5 cut(s) 150, 340, 438, 1018, 1046
BshNI GGYRCC 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 936
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 5 cut(s) 146, 157, 439, 911, 1010
BsmAI GTCTC 1 cut(s) 446
BsmBI CGTCTC 1 cut(s) 446
BsmFI GGGAC 1 cut(s) 968
BsnI GGCC 5 cut(s) 150, 340, 438, 1018, 1046
Bsp1286I GDGCHC 2 cut(s) 84, 335
Bsp143I GATC 1 cut(s) 257
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 2 cut(s) 403, 414
BspANI GGCC 5 cut(s) 150, 340, 438, 1018, 1046
BspCNI CTCAG 3 cut(s) 226, 688, 802
BspFNI CGCG 2 cut(s) 414, 880
BspLI GGNNCC 2 cut(s) 283, 401
BspMI ACCTGC 2 cut(s) 417, 862
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 399
BsrDI GCAATG 2 cut(s) 650, 762
BsrFI RCCGGY 1 cut(s) 935
BsrI ACTGG 2 cut(s) 843, 1047
BssAI RCCGGY 1 cut(s) 935
BssECI CCNNGG 2 cut(s) 140, 433
BssMI GATC 1 cut(s) 257
BssNAI GTATAC 1 cut(s) 864
BssSI CACGAG 1 cut(s) 334
BssT1I CCWWGG 2 cut(s) 140, 433
Bst1107I GTATAC 1 cut(s) 864
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 440, 525, 868
Bst4CI ACNGT 4 cut(s) 58, 188, 268, 990
Bst6I CTCTTC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 1086
BstC8I GCNNGC 4 cut(s) 430, 890, 937, 1033
BstDEI CTNAG 5 cut(s) 46, 76, 213, 696, 789
BstENI CCTNNNNNAGG 2 cut(s) 144, 437
BstF5I GGATG 4 cut(s) 609, 793, 847, 977
BstFNI CGCG 2 cut(s) 414, 880
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 4 cut(s) 414, 511, 880, 894
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 3 cut(s) 411, 551, 877
BstNI CCWGG 3 cut(s) 440, 525, 868
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 3 cut(s) 438, 523, 866
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 2 cut(s) 414, 880
BstV1I GCAGC 3 cut(s) 37, 518, 749
BstZ17I GTATAC 1 cut(s) 864
BsuRI GGCC 5 cut(s) 150, 340, 438, 1018, 1046
BtgZI GCGATG 1 cut(s) 916
BtsCI GGATG 4 cut(s) 609, 793, 847, 977
BtsIMutI CAGTG 2 cut(s) 693, 836
BveI ACCTGC 2 cut(s) 417, 862
Cac8I GCNNGC 4 cut(s) 430, 890, 937, 1033
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 4 cut(s) 414, 511, 880, 894
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 1 cut(s) 1016
CviAII CATG 1 cut(s) 889
DdeI CTNAG 5 cut(s) 46, 76, 213, 696, 789
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
EaeI YGGCCR 2 cut(s) 436, 1044
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 333
Eco130I CCWWGG 2 cut(s) 140, 433
Eco24I GRGCYC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 333
EcoNI CCTNNNNNAGG 2 cut(s) 144, 437
EcoRII CCWGG 3 cut(s) 438, 523, 866
EcoT14I CCWWGG 2 cut(s) 140, 433
EcoT38I GRGCYC 1 cut(s) 335
ErhI CCWWGG 2 cut(s) 140, 433
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 1 cut(s) 892
FaqI GGGAC 1 cut(s) 968
FatI CATG 1 cut(s) 888
FblI GTMKAC 1 cut(s) 863
Fnu4HI GCNGC 3 cut(s) 51, 507, 738
FokI GGATG 4 cut(s) 616, 780, 854, 984
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 51, 507, 738
FspAI RTGCGCAY 1 cut(s) 893
FspBI CTAG 2 cut(s) 122, 966
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 4 cut(s) 413, 510, 879, 893
GluI GCNGC 3 cut(s) 51, 507, 738
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 5 cut(s) 150, 340, 438, 1018, 1046
HapII CCGG 1 cut(s) 936
HhaI GCGC 4 cut(s) 414, 511, 880, 894
Hin1II CATG 1 cut(s) 892
Hin6I GCGC 4 cut(s) 412, 509, 878, 892
HinP1I GCGC 4 cut(s) 412, 509, 878, 892
HinfI GANTC 2 cut(s) 371, 679
HpaII CCGG 1 cut(s) 936
HphI GGTGA 3 cut(s) 252, 340, 836
Hpy166II GTNNAC 1 cut(s) 864
Hpy188I TCNGA 3 cut(s) 216, 252, 834
Hpy8I GTNNAC 1 cut(s) 864
HpyAV CCTTC 6 cut(s) 351, 488, 608, 697, 944, 1010
HpyCH4III ACNGT 4 cut(s) 58, 188, 268, 990
HpyCH4IV ACGT 2 cut(s) 455, 1085
HpyCH4V TGCA 7 cut(s) 18, 53, 506, 607, 737, 1031, 1072
HpyF10VI GCNNNNNNNGC 3 cut(s) 411, 551, 877
HpyF3I CTNAG 5 cut(s) 46, 76, 213, 696, 789
HpySE526I ACGT 2 cut(s) 455, 1085
Hsp92II CATG 1 cut(s) 892
HspAI GCGC 4 cut(s) 412, 509, 878, 892
KroI GCCGGC 1 cut(s) 935
KroNI GCCGGC 1 cut(s) 937
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 2 cut(s) 281, 637
Lsp1109I GCAGC 3 cut(s) 37, 518, 749
LweI GCATC 4 cut(s) 256, 356, 594, 802
MaeI CTAG 2 cut(s) 122, 966
MaeII ACGT 2 cut(s) 455, 1085
MaeIII GTNAC 2 cut(s) 95, 1081
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 5 cut(s) 193, 229, 610, 865, 901
MfeI CAATTG 1 cut(s) 662
MhlI GDGCHC 2 cut(s) 84, 335
MlsI TGGCCA 2 cut(s) 438, 1046
MluCI AATT 3 cut(s) 12, 519, 662
MluNI TGGCCA 2 cut(s) 438, 1046
MlyI GAGTC 1 cut(s) 365
Mox20I TGGCCA 2 cut(s) 438, 1046
MroNI GCCGGC 1 cut(s) 935
MscI TGGCCA 2 cut(s) 438, 1046
MseI TTAA 1 cut(s) 921
MslI CAYNNNNRTG 1 cut(s) 767
Msp20I TGGCCA 2 cut(s) 438, 1046
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 936
MspR9I CCNGG 3 cut(s) 440, 525, 868
MunI CAATTG 1 cut(s) 662
MvaI CCWGG 3 cut(s) 440, 525, 868
MvnI CGCG 2 cut(s) 414, 880
MwoI GCNNNNNNNGC 3 cut(s) 411, 551, 877
NaeI GCCGGC 1 cut(s) 937
NdeII GATC 1 cut(s) 257
NgoMIV GCCGGC 1 cut(s) 935
NlaIII CATG 1 cut(s) 892
NlaIV GGNNCC 2 cut(s) 283, 401
NsbI TGCGCA 1 cut(s) 893
NspI RCATGY 1 cut(s) 892
PaeI GCATGC 1 cut(s) 892
PcsI WCGNNNNNNNCGW 1 cut(s) 1074
PdiI GCCGGC 1 cut(s) 937
PfeI GAWTC 1 cut(s) 679
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 3 cut(s) 52, 508, 739
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 1086
Psp124BI GAGCTC 1 cut(s) 335
Psp6I CCWGG 3 cut(s) 438, 523, 866
PspGI CCWGG 3 cut(s) 438, 523, 866
PspN4I GGNNCC 2 cut(s) 283, 401
PspPI GGNCC 1 cut(s) 1016
PstNI CAGNNNCTG 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 767
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 3 cut(s) 51, 507, 738
Sau3AI GATC 1 cut(s) 257
Sau96I GGNCC 1 cut(s) 1016
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 3 cut(s) 440, 525, 868
SduI GDGCHC 2 cut(s) 84, 335
SfaNI GCATC 4 cut(s) 256, 356, 594, 802
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 892
Sse9I AATT 3 cut(s) 12, 519, 662
SsiI CCGC 2 cut(s) 403, 414
SspI AATATT 1 cut(s) 477
SspMI CTAG 2 cut(s) 122, 966
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 438, 523, 866
StyI CCWWGG 2 cut(s) 140, 433
TaaI ACNGT 4 cut(s) 58, 188, 268, 990
TaiI ACGT 2 cut(s) 458, 1088
TasI AATT 3 cut(s) 12, 519, 662
TfiI GAWTC 1 cut(s) 679
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 2 cut(s) 700, 843
TseI GCWGC 3 cut(s) 50, 506, 737
TspDTI ATGAA 4 cut(s) 24, 55, 872, 963
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 2 cut(s) 700, 843
Van91I CCANNNNNTGG 1 cut(s) 157
XagI CCTNNNNNAGG 2 cut(s) 144, 437
XapI RAATTY 2 cut(s) 12, 519
XceI RCATGY 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 863
XspI CTAG 2 cut(s) 122, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.