Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015875

Physical Location & Seq

Genomic Coordinates Reverse (-)

17836416 .. 17837618

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTCTGTCACCGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGAGATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGAGAAGAAGCAGAAGAAGAAGAAGATGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGGCGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTCAGATCAAAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGAAGTTCGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

4.93

Isoelectric Point (pI)

71.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0015875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42870 AT3G58850
fragaria_vesca	FvH4_4g34850 FvH4_6g38230
prunus_persica	Prupe.3G172700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151491
rosa_laevigata	RLG00000005848
rosa_multiflora	Rmu_sc0000940.1_g000019
rosa_roxburghii	Rroxscaffold_2G00096420
rosa_rugosa	Rorug02G0426600
rosa_samantha	Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana	Rw2G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	221
AccII	CGCG	2 cut(s)	78, 239
AciI	CCGC	2 cut(s)	81, 221
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	4 cut(s)	28, 113, 245, 276
ArsI	GACNNNNNNTTYG	3 cut(s)	227, 259, 329
AspLEI	GCGC	4 cut(s)	80, 96, 226, 241
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	39
AsuII	TTCGAA	1 cut(s)	246
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	147, 342
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	4 cut(s)	28, 113, 245, 276
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	2 cut(s)	81, 222
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	2 cut(s)	82, 223
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	2 cut(s)	147, 342
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu1102I	GCTNAGC	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	231
Bsh1236I	CGCG	2 cut(s)	78, 239
BsiSI	CCGG	1 cut(s)	213
BsiWI	CGTACG	1 cut(s)	133
BsmAI	GTCTC	4 cut(s)	28, 113, 245, 276
BsmBI	CGTCTC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	285, 328
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	81, 221
BspCNI	CTCAG	1 cut(s)	71
BspFNI	CGCG	2 cut(s)	78, 239
BspQI	GCTCTTC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	285, 328
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	51, 67
Bst6I	CTCTTC	2 cut(s)	243, 248
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	78, 239
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	4 cut(s)	80, 96, 226, 241
BstKTI	GATC	2 cut(s)	288, 331
BstMAI	GTCTC	4 cut(s)	28, 113, 245, 276
BstMBI	GATC	2 cut(s)	285, 328
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	2 cut(s)	78, 239
BstV2I	GAAGAC	2 cut(s)	147, 342
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	4 cut(s)	80, 96, 226, 241
CseI	GACGC	3 cut(s)	35, 45, 245
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	54, 340
CviJI	RGCY	3 cut(s)	17, 62, 257
CviKI_1	RGCY	3 cut(s)	17, 62, 257
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	2 cut(s)	287, 330
DpnII	GATC	2 cut(s)	285, 328
Eam1104I	CTCTTC	2 cut(s)	243, 248
EarI	CTCTTC	2 cut(s)	243, 248
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	57, 343
FaiI	YATR	3 cut(s)	55, 326, 341
FatI	CATG	2 cut(s)	53, 339
Fnu4HI	GCNGC	2 cut(s)	81, 222
Fsp4HI	GCNGC	2 cut(s)	81, 222
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	4 cut(s)	79, 95, 225, 240
GluI	GCNGC	2 cut(s)	81, 222
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	3 cut(s)	35, 45, 245
HhaI	GCGC	4 cut(s)	80, 96, 226, 241
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	57, 343
Hin6I	GCGC	4 cut(s)	78, 94, 224, 239
HinP1I	GCGC	4 cut(s)	78, 94, 224, 239
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	118, 285, 350
Hpy188III	TCNNGA	2 cut(s)	23, 332
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	51, 67
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	57, 343
HspAI	GCGC	4 cut(s)	78, 94, 224, 239
Kzo9I	GATC	2 cut(s)	285, 328
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	3 cut(s)	69, 226, 243
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	45, 260
MalI	GATC	2 cut(s)	287, 330
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	2 cut(s)	285, 328
MnlI	CCTC	5 cut(s)	166, 184, 195, 209, 344
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	2 cut(s)	83, 257
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	78, 239
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	285, 328
NlaIII	CATG	2 cut(s)	57, 343
NmuCI	GTSAC	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 243
Pfl23II	CGTACG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	82, 223
Ppu21I	YACGTR	1 cut(s)	137
PspLI	CGTACG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	81, 222
Sau3AI	GATC	2 cut(s)	285, 328
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	4 cut(s)	139, 177, 259, 355
SfuI	TTCGAA	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	52
SsiI	CCGC	2 cut(s)	81, 221
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	51, 67
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	90, 246
TaqII	GACCGA	1 cut(s)	159
TauI	GCSGC	2 cut(s)	83, 224
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	121
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.