Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015875

Physical Location & Seq

Genomic Coordinates Reverse (-)

70926059 .. 70926487

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG487300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGATCGAGAATAAATCTCAGACCCAGATACCCAAACCCACATTGAAGAGAAAGCAAAGAAAAACCCACATGGGCAGTAATGCACTGCATGAATCCCACGCAGCAAGATCAAGCAGCAGCAGAAGAATCAAAGCAAGAAGAGAGAGTCAGTGCATGAAGACTAGTACTACTACTTCTCAGAAAAACCCAAAAGATGTAAAGGCTCATGGTGGTGAGGAGGAAGCTGCTGATGATAGGGAGGAGGTAGAGAGGAAGATAGAGGCATTGCAGAGGATTGTACCCGGAGGTGAGTCGCTTGGTGTGGACAAGCTATTTGAAGAGACTGCTGGGTACATTATGACCTTGCAGGTTCAGCTCAAAGCCATGAAAGCCCTTGCAAGCTTTTTTGAGGGTTTGGAGAAGGAGAAGAAAAAGTTTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.94

Weight (kDa)

9.57

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42870 AT3G58850
fragaria_vesca	FvH4_4g34850 FvH4_6g38230
prunus_persica	Prupe.3G172700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151491
rosa_laevigata	RLG00000005848
rosa_multiflora	Rmu_sc0000940.1_g000019
rosa_roxburghii	Rroxscaffold_2G00096420
rosa_rugosa	Rorug02G0426600
rosa_samantha	Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana	Rw2G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AfaI	GTAC	3 cut(s)	169, 282, 335
AgsI	TTSAA	2 cut(s)	49, 320
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	5 cut(s)	227, 313, 358, 384, 425
AluI	AGCT	5 cut(s)	227, 313, 358, 384, 425
Alw26I	GTCTC	1 cut(s)	317
ApeKI	GCWGC	4 cut(s)	104, 117, 120, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	227, 302
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	116, 129, 132, 214
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	317
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	105, 118, 121, 228
BlsI	GCNGC	4 cut(s)	106, 119, 122, 229
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	35, 194
BseRI	GAGGAG	2 cut(s)	233, 257
BseXI	GCAGC	4 cut(s)	116, 129, 132, 214
BseYI	CCCAGC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	6, 110
BspCNI	CTCAG	2 cut(s)	34, 193
BspMI	ACCTGC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	266
BssMI	GATC	2 cut(s)	6, 110
Bst6I	CTCTTC	3 cut(s)	44, 136, 315
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	21, 180
BstKTI	GATC	2 cut(s)	9, 113
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	6, 110
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 371
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	4 cut(s)	116, 129, 132, 214
BstV2I	GAAGAC	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 158
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	168, 281, 334
CviAII	CATG	5 cut(s)	73, 92, 157, 209, 367
CviJI	RGCY	8 cut(s)	206, 227, 313, 358, 365, 374, 384, 425
CviKI_1	RGCY	8 cut(s)	206, 227, 313, 358, 365, 374, 384, 425
CviQI	GTAC	3 cut(s)	168, 281, 334
DdeI	CTNAG	2 cut(s)	21, 180
DpnI	GATC	2 cut(s)	8, 112
DpnII	GATC	2 cut(s)	6, 110
Eam1104I	CTCTTC	3 cut(s)	44, 136, 315
EarI	CTCTTC	3 cut(s)	44, 136, 315
FaeI	CATG	5 cut(s)	76, 95, 160, 212, 370
FaiI	YATR	6 cut(s)	74, 93, 158, 210, 341, 368
FatI	CATG	5 cut(s)	72, 91, 156, 208, 366
Fnu4HI	GCNGC	4 cut(s)	105, 118, 121, 228
Fsp4HI	GCNGC	4 cut(s)	105, 118, 121, 228
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	105, 118, 121, 228
GsaI	CCCAGC	1 cut(s)	333
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	5 cut(s)	76, 95, 160, 212, 370
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	4 cut(s)	95, 129, 148, 293
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	227, 302
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	24, 183
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	397
HpyCH4V	TGCA	6 cut(s)	86, 91, 156, 271, 349, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 371
HpyF3I	CTNAG	2 cut(s)	21, 180
Hsp92II	CATG	5 cut(s)	76, 95, 160, 212, 370
Kzo9I	GATC	2 cut(s)	6, 110
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	4 cut(s)	41, 298, 315, 335
Lsp1109I	GCAGC	4 cut(s)	116, 129, 132, 214
MaeI	CTAG	1 cut(s)	165
MalI	GATC	2 cut(s)	8, 112
MboI	GATC	2 cut(s)	6, 110
MboII	GAAGA	7 cut(s)	61, 138, 153, 172, 268, 332, 421
MlyI	GAGTC	2 cut(s)	157, 302
MnlI	CCTC	9 cut(s)	211, 214, 235, 238, 246, 256, 267, 281, 385
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	355, 371
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	6, 110
NlaIII	CATG	5 cut(s)	76, 95, 160, 212, 370
PfeI	GAWTC	2 cut(s)	95, 129
PkrI	GCNGC	4 cut(s)	106, 119, 122, 229
PleI	GAGTC	2 cut(s)	156, 301
PpsI	GAGTC	2 cut(s)	156, 301
PspFI	CCCAGC	1 cut(s)	329
RsaI	GTAC	3 cut(s)	169, 282, 335
RsaNI	GTAC	3 cut(s)	168, 281, 334
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	4 cut(s)	105, 118, 121, 228
Sau3AI	GATC	2 cut(s)	6, 110
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	2 cut(s)	157, 302
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	9 cut(s)	229, 249, 292, 315, 347, 354, 360, 386, 427
SmiMI	CAYNNNNRTG	1 cut(s)	213
SpeI	ACTAGT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	283
TaqI	TCGA	1 cut(s)	9
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	95, 129
TscAI	CASTG	2 cut(s)	93, 158
TseI	GCWGC	4 cut(s)	104, 117, 120, 227
TspDTI	ATGAA	3 cut(s)	108, 173, 383
TspRI	CASTG	2 cut(s)	93, 158
XspI	CTAG	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.