phy rapidly regulated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42870 AT3G58850 |
| fragaria_vesca | FvH4_4g34850 FvH4_6g38230 |
| prunus_persica | Prupe.3G172700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0151491 |
| rosa_laevigata | RLG00000005848 |
| rosa_multiflora | Rmu_sc0000940.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00096420 |
| rosa_rugosa | Rorug02G0426600 |
| rosa_samantha | Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900 |
| rosa_wichuraiana | Rw2G039940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 234 |
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 2 cut(s) | 60, 91 |
| AcuI | CTGAAG | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 88 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 59, 91 |
| AluBI | AGCT | 2 cut(s) | 75, 257 |
| AluI | AGCT | 2 cut(s) | 75, 257 |
| Alw26I | GTCTC | 3 cut(s) | 54, 131, 245 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 227, 259 |
| AspLEI | GCGC | 2 cut(s) | 196, 241 |
| AsuC2I | CCSGG | 1 cut(s) | 213 |
| AsuII | TTCGAA | 1 cut(s) | 246 |
| BccI | CCATC | 1 cut(s) | 61 |
| BceAI | ACGGC | 2 cut(s) | 47, 138 |
| BcnI | CCSGG | 1 cut(s) | 213 |
| BcoDI | GTCTC | 3 cut(s) | 54, 131, 245 |
| BfaI | CTAG | 2 cut(s) | 14, 258 |
| BfoI | RGCGCY | 1 cut(s) | 197 |
| Bme1390I | CCNGG | 1 cut(s) | 213 |
| BmrFI | CCNGG | 1 cut(s) | 213 |
| BmsI | GCATC | 1 cut(s) | 106 |
| Bpu14I | TTCGAA | 1 cut(s) | 246 |
| BpuEI | CTTGAG | 1 cut(s) | 338 |
| BpuMI | CCSGG | 1 cut(s) | 213 |
| BsaI | GGTCTC | 1 cut(s) | 131 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| Bse3DI | GCAATG | 1 cut(s) | 284 |
| BseGI | GGATG | 1 cut(s) | 53 |
| BseMI | GCAATG | 1 cut(s) | 284 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseRI | GAGGAG | 2 cut(s) | 33, 194 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BsiSI | CCGG | 1 cut(s) | 213 |
| BsmAI | GTCTC | 3 cut(s) | 54, 131, 245 |
| BsmBI | CGTCTC | 1 cut(s) | 54 |
| Bso31I | GGTCTC | 1 cut(s) | 131 |
| Bsp119I | TTCGAA | 1 cut(s) | 246 |
| Bsp143I | GATC | 2 cut(s) | 186, 285 |
| BspACI | CCGC | 2 cut(s) | 60, 91 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspQI | GCTCTTC | 1 cut(s) | 43 |
| BspT104I | TTCGAA | 1 cut(s) | 246 |
| BspTNI | GGTCTC | 1 cut(s) | 131 |
| BsrDI | GCAATG | 1 cut(s) | 284 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| BssMI | GATC | 2 cut(s) | 186, 285 |
| Bst6I | CTCTTC | 2 cut(s) | 43, 243 |
| BstBI | TTCGAA | 1 cut(s) | 246 |
| BstF5I | GGATG | 1 cut(s) | 53 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstH2I | RGCGCY | 1 cut(s) | 197 |
| BstHHI | GCGC | 2 cut(s) | 196, 241 |
| BstKTI | GATC | 2 cut(s) | 189, 288 |
| BstMAI | GTCTC | 3 cut(s) | 54, 131, 245 |
| BstMBI | GATC | 2 cut(s) | 186, 285 |
| BstSCI | CCNGG | 1 cut(s) | 211 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BtsCI | GGATG | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| CfoI | GCGC | 2 cut(s) | 196, 241 |
| CseI | GACGC | 1 cut(s) | 245 |
| CviJI | RGCY | 4 cut(s) | 17, 75, 257, 272 |
| CviKI_1 | RGCY | 4 cut(s) | 17, 75, 257, 272 |
| DpnI | GATC | 2 cut(s) | 188, 287 |
| DpnII | GATC | 2 cut(s) | 186, 285 |
| Eam1104I | CTCTTC | 2 cut(s) | 43, 243 |
| EarI | CTCTTC | 2 cut(s) | 43, 243 |
| EciI | GGCGGA | 1 cut(s) | 49 |
| Eco31I | GGTCTC | 1 cut(s) | 131 |
| Eco57I | CTGAAG | 1 cut(s) | 182 |
| Esp3I | CGTCTC | 1 cut(s) | 54 |
| FaiI | YATR | 2 cut(s) | 27, 341 |
| FblI | GTMKAC | 1 cut(s) | 234 |
| FokI | GGATG | 1 cut(s) | 40 |
| FspBI | CTAG | 2 cut(s) | 14, 258 |
| GlaI | GCGC | 2 cut(s) | 195, 240 |
| HaeII | RGCGCY | 1 cut(s) | 197 |
| HapII | CCGG | 1 cut(s) | 213 |
| HgaI | GACGC | 1 cut(s) | 245 |
| HhaI | GCGC | 2 cut(s) | 196, 241 |
| Hin6I | GCGC | 2 cut(s) | 194, 239 |
| HinP1I | GCGC | 2 cut(s) | 194, 239 |
| HincII | GTYRAC | 1 cut(s) | 235 |
| HindII | GTYRAC | 1 cut(s) | 235 |
| HpaII | CCGG | 1 cut(s) | 213 |
| Hpy166II | GTNNAC | 2 cut(s) | 67, 235 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 201, 285 |
| Hpy188III | TCNNGA | 1 cut(s) | 317 |
| Hpy8I | GTNNAC | 2 cut(s) | 67, 235 |
| Hpy99I | CGWCG | 2 cut(s) | 146, 239 |
| HpyAV | CCTTC | 1 cut(s) | 164 |
| HpyCH4IV | ACGT | 2 cut(s) | 144, 311 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 277 |
| HpySE526I | ACGT | 2 cut(s) | 144, 311 |
| HspAI | GCGC | 2 cut(s) | 194, 239 |
| Kzo9I | GATC | 2 cut(s) | 186, 285 |
| LguI | GCTCTTC | 1 cut(s) | 43 |
| LmnI | GCTCC | 1 cut(s) | 80 |
| LpnPI | CCDG | 3 cut(s) | 66, 112, 226 |
| LweI | GCATC | 1 cut(s) | 106 |
| MaeI | CTAG | 2 cut(s) | 14, 258 |
| MaeII | ACGT | 2 cut(s) | 144, 311 |
| MaeIII | GTNAC | 1 cut(s) | 260 |
| MalI | GATC | 2 cut(s) | 188, 287 |
| MboI | GATC | 2 cut(s) | 186, 285 |
| MboII | GAAGA | 7 cut(s) | 30, 161, 167, 173, 179, 196, 260 |
| MnlI | CCTC | 6 cut(s) | 54, 67, 172, 184, 209, 344 |
| MseI | TTAA | 1 cut(s) | 297 |
| MspI | CCGG | 1 cut(s) | 213 |
| MspR9I | CCNGG | 1 cut(s) | 213 |
| MvnI | CGCG | 1 cut(s) | 239 |
| NciI | CCSGG | 1 cut(s) | 213 |
| NdeII | GATC | 2 cut(s) | 186, 285 |
| NspV | TTCGAA | 1 cut(s) | 246 |
| PciSI | GCTCTTC | 1 cut(s) | 43 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 243 |
| PfoI | TCCNGGA | 1 cut(s) | 211 |
| SalI | GTCGAC | 1 cut(s) | 233 |
| SapI | GCTCTTC | 1 cut(s) | 43 |
| SaqAI | TTAA | 1 cut(s) | 297 |
| Sau3AI | GATC | 2 cut(s) | 186, 285 |
| ScrFI | CCNGG | 1 cut(s) | 213 |
| SetI | ASST | 5 cut(s) | 77, 147, 259, 314, 355 |
| SfaNI | GCATC | 1 cut(s) | 106 |
| SfuI | TTCGAA | 1 cut(s) | 246 |
| SmlI | CTYRAG | 1 cut(s) | 317 |
| SmoI | CTYRAG | 1 cut(s) | 317 |
| SsiI | CCGC | 2 cut(s) | 60, 91 |
| SspMI | CTAG | 2 cut(s) | 14, 258 |
| StyD4I | CCNGG | 1 cut(s) | 211 |
| TaiI | ACGT | 2 cut(s) | 147, 314 |
| TaqI | TCGA | 3 cut(s) | 189, 234, 246 |
| TaqII | GACCGA | 1 cut(s) | 155 |
| Tru1I | TTAA | 1 cut(s) | 297 |
| Tru9I | TTAA | 1 cut(s) | 297 |
| TscAI | CASTG | 1 cut(s) | 85 |
| TspDTI | ATGAA | 4 cut(s) | 168, 174, 180, 356 |
| TspGWI | ACGGA | 2 cut(s) | 36, 236 |
| TspRI | CASTG | 1 cut(s) | 85 |
| XmiI | GTMKAC | 1 cut(s) | 234 |
| XspI | CTAG | 2 cut(s) | 14, 258 |