FvH4_4g34850
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015875
Physical Location & Seq
Reverse (-)
32396179 .. 32397114
936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34850.t1

Sequence Viewer

Length: 558 bp
ATGAGATCGGACAAGTATCGGGAAGTACACTGCCGGGATTTGGGAATAAGGGACCGACGGGGACATGCCGTGCCCCATATTGCAAAACGACAACGAAACTGTGCTCGTGAGGCAAATTCAATGGTGTGCTTTGTGGCCTTATTATGGGAGCTAGAATTATTGGAGGACTCCATCGGAGGAGTAGGAGATGTTGATTTGGAGAGGCAATGGCTCGGCTCACATGGCCCCCTAATAAATATAGAGCAGGTGTTGGATTCTGAGAATGAGTTCGTTCGGGTGTTCGAAGATCATGAGGTCGAGGAGGAGGAGTGCGGTGGGGGGAAGACGACGTCGTGTTGGCGGTGGAGGGAGGAGGACGACGACGACGGTGAGAGTGAAGGTGAGGAAGCTGCAAATGCTGATTCCGGGAGGGAGAGGGCTGGAGGCGGAGACGCTGTTTCGGCACACGGCGGATTACATAATGCATTTGAAGTTCCAGGTCGATGTTTTGCAAGCGATTTCCAAGATTTACAAGCTGTGAAATTAGTACGTGTTAATCACCATGCGCATATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

186

Amino Acids

20.75

Weight (kDa)

4.86

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42870 AT3G58850
fragaria_vesca FvH4_4g34850 FvH4_6g38230
prunus_persica Prupe.3G172700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151491
rosa_laevigata RLG00000005848
rosa_multiflora Rmu_sc0000940.1_g000019
rosa_roxburghii Rroxscaffold_2G00096420
rosa_rugosa Rorug02G0426600
rosa_samantha Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana Rw2G039940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
AatII GACGTC 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 546
Acc36I ACCTGC 1 cut(s) 235
AciI CCGC 4 cut(s) 312, 340, 426, 450
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 2 cut(s) 27, 528
AfiI CCNNNNNNNGG 2 cut(s) 40, 144
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 2 cut(s) 120, 470
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 3 cut(s) 151, 389, 515
AluI AGCT 3 cut(s) 151, 389, 515
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 423
AoxI GGCC 2 cut(s) 135, 223
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 115
AseI ATTAAT 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 52, 224
AsuC2I CCSGG 2 cut(s) 35, 406
AsuHPI GGTGA 3 cut(s) 380, 392, 530
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 75
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 179
BceAI ACGGC 2 cut(s) 53, 463
BciT130I CCWGG 1 cut(s) 477
BcnI CCSGG 2 cut(s) 35, 406
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 35, 406, 477
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 52, 224
BmiI GGNNCC 2 cut(s) 53, 226
BmrFI CCNGG 3 cut(s) 35, 406, 477
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 35, 406
BsaAI YACGTR 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 329
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 144
Bse3DI GCAATG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 40, 144
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 5 cut(s) 192, 314, 317, 320, 365
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 2 cut(s) 137, 225
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 2 cut(s) 34, 405
BslFI GGGAC 2 cut(s) 65, 75
BslI CCNNNNNNNGG 2 cut(s) 40, 144
BsmAI GTCTC 1 cut(s) 423
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 2 cut(s) 65, 75
BsnI GGCC 2 cut(s) 137, 225
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 75, 106
Bsp143I GATC 2 cut(s) 5, 286
BspACI CCGC 4 cut(s) 312, 340, 426, 450
BspANI GGCC 2 cut(s) 137, 225
BspCNI CTCAG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 53, 226
BspMI ACCTGC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 212
BssMI GATC 2 cut(s) 5, 286
BssNI GRCGYC 1 cut(s) 329
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 101, 368
BstACI GRCGYC 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 2 cut(s) 8, 289
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 2 cut(s) 5, 286
BstMWI GCNNNNNNNGC 4 cut(s) 110, 222, 395, 440
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 33, 404, 475
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 329
BsuRI GGCC 2 cut(s) 137, 225
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 28
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 493
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 52, 224
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 26, 527
CviAII CATG 4 cut(s) 65, 221, 290, 542
CviJI RGCY 8 cut(s) 137, 151, 211, 216, 225, 389, 419, 515
CviKI_1 RGCY 8 cut(s) 137, 151, 211, 216, 225, 389, 419, 515
CviQI GTAC 2 cut(s) 26, 527
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 7, 288
DpnII GATC 2 cut(s) 5, 286
EciI GGCGGA 2 cut(s) 441, 465
Eco47I GGWCC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 475
EcoT22I ATGCAT 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 4 cut(s) 68, 224, 293, 545
FaiI YATR 9 cut(s) 66, 78, 145, 222, 239, 291, 459, 543, 549
FaqI GGGAC 2 cut(s) 65, 75
FatI CATG 4 cut(s) 64, 220, 289, 541
Fnu4HI GCNGC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 390
FspAI RTGCGCAY 1 cut(s) 546
FspBI CTAG 1 cut(s) 152
FspI TGCGCA 1 cut(s) 546
GlaI GCGC 1 cut(s) 546
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 137, 225
HapII CCGG 2 cut(s) 34, 405
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 547
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 4 cut(s) 68, 224, 293, 545
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 3 cut(s) 167, 254, 401
HpaII CCGG 2 cut(s) 34, 405
HphI GGTGA 3 cut(s) 380, 392, 530
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 10, 176, 259
Hpy188III TCNNGA 3 cut(s) 20, 107, 290
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 6 cut(s) 60, 331, 334, 362, 365, 368
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 101, 368
HpyCH4IV ACGT 2 cut(s) 329, 529
HpyCH4V TGCA 4 cut(s) 83, 392, 464, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 222, 395, 440
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 329, 529
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 4 cut(s) 68, 224, 293, 545
HspAI GCGC 1 cut(s) 545
Kzo9I GATC 2 cut(s) 5, 286
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 6 cut(s) 47, 230, 405, 418, 462, 489
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 1 cut(s) 152
MaeII ACGT 2 cut(s) 329, 529
MalI GATC 2 cut(s) 7, 288
MboI GATC 2 cut(s) 5, 286
MboII GAAGA 2 cut(s) 296, 334
MhlI GDGCHC 2 cut(s) 75, 106
MluCI AATT 4 cut(s) 115, 155, 521, 553
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 3 cut(s) 534, 552, 556
MspI CCGG 2 cut(s) 34, 405
MspR9I CCNGG 3 cut(s) 35, 406, 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 4 cut(s) 110, 222, 395, 440
NciI CCSGG 2 cut(s) 35, 406
NdeII GATC 2 cut(s) 5, 286
NlaIII CATG 4 cut(s) 68, 224, 293, 545
NlaIV GGNNCC 2 cut(s) 53, 226
NmeAIII GCCGAG 1 cut(s) 192
NsbI TGCGCA 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 1 cut(s) 68
NspV TTCGAA 1 cut(s) 282
PacI TTAATTAA 1 cut(s) 556
PagI TCATGA 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 254, 401
PflFI GACNNNGTC 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 404
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Ppu21I YACGTR 1 cut(s) 530
PshBI ATTAAT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 2 cut(s) 53, 226
PspPI GGNCC 2 cut(s) 52, 224
PsyI GACNNNGTC 1 cut(s) 328
RsaI GTAC 2 cut(s) 27, 528
RsaNI GTAC 2 cut(s) 26, 527
SaqAI TTAA 3 cut(s) 534, 552, 556
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 2 cut(s) 5, 286
Sau96I GGNCC 2 cut(s) 52, 224
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 3 cut(s) 35, 406, 477
SduI GDGCHC 2 cut(s) 75, 106
SetI ASST 9 cut(s) 153, 249, 297, 332, 382, 391, 481, 517, 532
SfuI TTCGAA 1 cut(s) 282
SinI GGWCC 1 cut(s) 52
Sse9I AATT 4 cut(s) 115, 155, 521, 553
SsiI CCGC 4 cut(s) 312, 340, 426, 450
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 33, 404, 475
TaaI ACNGT 2 cut(s) 101, 368
TaiI ACGT 2 cut(s) 332, 532
TaqI TCGA 3 cut(s) 282, 297, 481
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 115, 155, 521, 553
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 2 cut(s) 254, 401
Tru1I TTAA 3 cut(s) 534, 552, 556
Tru9I TTAA 3 cut(s) 534, 552, 556
TscAI CASTG 1 cut(s) 35
TseI GCWGC 1 cut(s) 389
TspRI CASTG 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 1 cut(s) 152
ZraI GACGTC 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.