Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015875

Physical Location & Seq

Genomic Coordinates Reverse (-)

65416077 .. 65416731

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGAGAAAGCAAAGAAAAACCCACATGGGCAGTAATGCACTGCATGAATCCCACGCAGCAGCAAGATCAAGCAGCAGCAGAAGAATCAAAGCAAGAAGAGACAGTCAGTGCATGAAGACTAGTACTACTACTTCTCAGAAAAACCCAAAAGATGTAAAGGCTCATGGTGGTGAGGAGGAAGCTGCTGATGATAGGGAGGAGGTAGAGAGGAAGATAGAGGCATTGCAGAGGATTGTACCCGGAGGTGAGTCACTTGGTGTGGACAAGCTATTTGAAGAGACTGCTGGGTACATTATGACCTTGCAGGTTCAGCTCAAAGCCATGAAAGCCCTTGCAAGCTTTTTTGAGGGTTTGGAGAAGGAGAAGAAAAAGTTTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.29

Weight (kDa)

9.64

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42870 AT3G58850
fragaria_vesca	FvH4_4g34850 FvH4_6g38230
prunus_persica	Prupe.3G172700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151491
rosa_laevigata	RLG00000005848
rosa_multiflora	Rmu_sc0000940.1_g000019
rosa_roxburghii	Rroxscaffold_2G00096420
rosa_rugosa	Rorug02G0426600
rosa_samantha	Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana	Rw2G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	3 cut(s)	127, 240, 293
AgsI	TTSAA	1 cut(s)	278
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	5 cut(s)	185, 271, 316, 342, 383
AluI	AGCT	5 cut(s)	185, 271, 316, 342, 383
Alw26I	GTCTC	2 cut(s)	96, 275
ApeKI	GCWGC	5 cut(s)	59, 62, 75, 78, 185
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	185, 260
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	5 cut(s)	71, 74, 87, 90, 172
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	96, 275
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	5 cut(s)	60, 63, 76, 79, 186
BlsI	GCNGC	5 cut(s)	61, 64, 77, 80, 187
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	152
BseRI	GAGGAG	2 cut(s)	191, 215
BseXI	GCAGC	5 cut(s)	71, 74, 87, 90, 172
BseYI	CCCAGC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	96, 275
Bsp143I	GATC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	224
BssMI	GATC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	94, 273
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	2 cut(s)	96, 275
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 329
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	5 cut(s)	71, 74, 87, 90, 172
BstV2I	GAAGAC	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 116
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	340
Csp6I	GTAC	3 cut(s)	126, 239, 292
CviAII	CATG	5 cut(s)	28, 47, 115, 167, 325
CviJI	RGCY	8 cut(s)	164, 185, 271, 316, 323, 332, 342, 383
CviKI_1	RGCY	8 cut(s)	164, 185, 271, 316, 323, 332, 342, 383
CviQI	GTAC	3 cut(s)	126, 239, 292
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	94, 273
EarI	CTCTTC	2 cut(s)	94, 273
FaeI	CATG	5 cut(s)	31, 50, 118, 170, 328
FaiI	YATR	6 cut(s)	29, 48, 116, 168, 299, 326
FatI	CATG	5 cut(s)	27, 46, 114, 166, 324
Fnu4HI	GCNGC	5 cut(s)	60, 63, 76, 79, 186
Fsp4HI	GCNGC	5 cut(s)	60, 63, 76, 79, 186
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	5 cut(s)	60, 63, 76, 79, 186
GsaI	CCCAGC	1 cut(s)	291
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	5 cut(s)	31, 50, 118, 170, 328
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	50, 87, 251
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	185, 260
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	6 cut(s)	41, 46, 114, 229, 307, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 329
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	31, 50, 118, 170, 328
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	3 cut(s)	256, 273, 293
Lsp1109I	GCAGC	5 cut(s)	71, 74, 87, 90, 172
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	7 cut(s)	16, 96, 111, 130, 226, 290, 379
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	9 cut(s)	169, 172, 193, 196, 204, 214, 225, 239, 343
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	313, 329
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	5 cut(s)	31, 50, 118, 170, 328
NmuCI	GTSAC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	50, 87
PkrI	GCNGC	5 cut(s)	61, 64, 77, 80, 187
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	287
RsaI	GTAC	3 cut(s)	127, 240, 293
RsaNI	GTAC	3 cut(s)	126, 239, 292
RseI	CAYNNNNRTG	1 cut(s)	171
SatI	GCNGC	5 cut(s)	60, 63, 76, 79, 186
Sau3AI	GATC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	127
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	9 cut(s)	187, 207, 250, 273, 305, 312, 318, 344, 385
SmiMI	CAYNNNNRTG	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	107
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	50, 87
TscAI	CASTG	2 cut(s)	48, 116
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	5 cut(s)	59, 62, 75, 78, 185
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	4 cut(s)	17, 63, 131, 341
TspRI	CASTG	2 cut(s)	48, 116
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.