Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015875

Physical Location & Seq

Genomic Coordinates Reverse (-)

73512643 .. 73513382

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG510900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGATCGAGAATAAATCTCAGACCCAGATACCCAAACCCACATTGAAGAGAAAGCAAAGAAAAACCCACATGGGCAGTAATGCACTGCATGAATCCCACGCAGCAGCAAGATCAAGCAGCAGCAGAAGAATCAAAGCAAGAAGAGACAGTCAGTGCATGAAGACTAGTACTACTACTTCTCAGAAAAACCCAAAAGATGTAAAGGCTCATGGTGGTGAGGAGGAAGCTGCTGATGATAGGGAGGAGGTAGAGAGGAAGATAGAGGCATTGCAGAGGATTGTACCCGGAGGTGAGTCACTTGGTGTGGACAAGCTATTTGAAGAGACTGCTGGGTACATTATGACCTTGCAGGTTCAGCTCAAAGCCATGAAAGCCCTTGCAACCTTTTTTGAGGGTTTGGAGAAGGAGAAGAAAAAGTTTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.01

Weight (kDa)

9.57

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42870 AT3G58850
fragaria_vesca	FvH4_4g34850 FvH4_6g38230
prunus_persica	Prupe.3G172700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151491
rosa_laevigata	RLG00000005848
rosa_multiflora	Rmu_sc0000940.1_g000019
rosa_roxburghii	Rroxscaffold_2G00096420
rosa_rugosa	Rorug02G0426600
rosa_samantha	Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana	Rw2G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	343
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	172, 285, 338
AgsI	TTSAA	2 cut(s)	49, 323
AhlI	ACTAGT	1 cut(s)	167
AluBI	AGCT	4 cut(s)	230, 316, 361, 428
AluI	AGCT	4 cut(s)	230, 316, 361, 428
Alw26I	GTCTC	2 cut(s)	141, 320
ApeKI	GCWGC	5 cut(s)	104, 107, 120, 123, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	230, 305
BarI	GAAGNNNNNNTAC	2 cut(s)	163, 195
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	5 cut(s)	116, 119, 132, 135, 217
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	141, 320
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	5 cut(s)	105, 108, 121, 124, 231
BlsI	GCNGC	5 cut(s)	106, 109, 122, 125, 232
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	35, 197
BseRI	GAGGAG	2 cut(s)	236, 260
BseXI	GCAGC	5 cut(s)	116, 119, 132, 135, 217
BseYI	CCCAGC	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	141, 320
Bsp143I	GATC	2 cut(s)	6, 113
BspCNI	CTCAG	2 cut(s)	34, 196
BspMI	ACCTGC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	269
BssMI	GATC	2 cut(s)	6, 113
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	3 cut(s)	44, 139, 318
BstDEI	CTNAG	2 cut(s)	21, 183
BstKTI	GATC	2 cut(s)	9, 116
BstMAI	GTCTC	2 cut(s)	141, 320
BstMBI	GATC	2 cut(s)	6, 113
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 374
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	5 cut(s)	116, 119, 132, 135, 217
BstV2I	GAAGAC	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 161
BveI	ACCTGC	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	171, 284, 337
CviAII	CATG	5 cut(s)	73, 92, 160, 212, 370
CviJI	RGCY	7 cut(s)	209, 230, 316, 361, 368, 377, 428
CviKI_1	RGCY	7 cut(s)	209, 230, 316, 361, 368, 377, 428
CviQI	GTAC	3 cut(s)	171, 284, 337
DdeI	CTNAG	2 cut(s)	21, 183
DpnI	GATC	2 cut(s)	8, 115
DpnII	GATC	2 cut(s)	6, 113
DraIII	CACNNNGTG	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	44, 139, 318
EarI	CTCTTC	3 cut(s)	44, 139, 318
FaeI	CATG	5 cut(s)	76, 95, 163, 215, 373
FaiI	YATR	6 cut(s)	74, 93, 161, 213, 344, 371
FatI	CATG	5 cut(s)	72, 91, 159, 211, 369
Fnu4HI	GCNGC	5 cut(s)	105, 108, 121, 124, 231
Fsp4HI	GCNGC	5 cut(s)	105, 108, 121, 124, 231
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	5 cut(s)	105, 108, 121, 124, 231
GsaI	CCCAGC	1 cut(s)	336
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	5 cut(s)	76, 95, 163, 215, 373
HinfI	GANTC	3 cut(s)	95, 132, 296
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	230, 305
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	24, 186
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	6 cut(s)	86, 91, 159, 274, 352, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 374
HpyF3I	CTNAG	2 cut(s)	21, 183
Hsp92II	CATG	5 cut(s)	76, 95, 163, 215, 373
Kzo9I	GATC	2 cut(s)	6, 113
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	4 cut(s)	41, 301, 318, 338
Lsp1109I	GCAGC	5 cut(s)	116, 119, 132, 135, 217
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	2 cut(s)	8, 115
MboI	GATC	2 cut(s)	6, 113
MboII	GAAGA	7 cut(s)	61, 141, 156, 175, 271, 335, 424
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	9 cut(s)	214, 217, 238, 241, 249, 259, 270, 284, 388
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	358, 374
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	6, 113
NlaIII	CATG	5 cut(s)	76, 95, 163, 215, 373
NmuCI	GTSAC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	95, 132
PkrI	GCNGC	5 cut(s)	106, 109, 122, 125, 232
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	332
RsaI	GTAC	3 cut(s)	172, 285, 338
RsaNI	GTAC	3 cut(s)	171, 284, 337
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	5 cut(s)	105, 108, 121, 124, 231
Sau3AI	GATC	2 cut(s)	6, 113
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	9 cut(s)	232, 252, 295, 318, 350, 357, 363, 389, 430
SmiMI	CAYNNNNRTG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	9
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	95, 132
TscAI	CASTG	2 cut(s)	93, 161
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	5 cut(s)	104, 107, 120, 123, 230
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	3 cut(s)	108, 176, 386
TspRI	CASTG	2 cut(s)	93, 161
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.