Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015875

Physical Location & Seq

Genomic Coordinates Forward (+)

17664616 .. 17664972

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGCAGTAATGCACTGCATGAATCCCACGCAGCAAGATCAAGCAGCAGCAGAAGAATCAAAGCAAGAAGAGACAGCCAGTGCATGAAGACTAGTACTACTACTTCTCAGAAAAACCCAAAAGATGTAAAGGCTCATGGTGGTGAGGAGGAAGCTGCTGATGATAGGGAGGAGGTAGAGAGGAAGATAGAGGCATTGCAGAGGATTGTGCCTGGAGGTGAGTCACTTGGTGTGGACAAGCTATTTGAAGAGACTGCTGGGTACATTATGACCTTGCAGGTTCAGCTCAAAGCCATGAAAGCCCTTGCAAGCTTTTTTGAGGGTTTGGAGAAGGAGAAGAAAAAGTTTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.03

Weight (kDa)

8.71

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42870 AT3G58850
fragaria_vesca	FvH4_4g34850 FvH4_6g38230
prunus_persica	Prupe.3G172700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151491
rosa_laevigata	RLG00000005848
rosa_multiflora	Rmu_sc0000940.1_g000019
rosa_roxburghii	Rroxscaffold_2G00096420
rosa_rugosa	Rorug02G0426600
rosa_samantha	Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana	Rw2G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	97, 263
AgsI	TTSAA	1 cut(s)	248
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	5 cut(s)	155, 241, 286, 312, 353
AluI	AGCT	5 cut(s)	155, 241, 286, 312, 353
Alw26I	GTCTC	2 cut(s)	66, 245
ApeKI	GCWGC	4 cut(s)	32, 45, 48, 155
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AsuHPI	GGTGA	2 cut(s)	155, 230
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	4 cut(s)	44, 57, 60, 142
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	66, 245
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	4 cut(s)	33, 46, 49, 156
BlsI	GCNGC	4 cut(s)	34, 47, 50, 157
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	161, 185
BseXI	GCAGC	4 cut(s)	44, 57, 60, 142
BseYI	CCCAGC	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	66, 245
Bsp143I	GATC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	64, 243
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	2 cut(s)	66, 245
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 299
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	4 cut(s)	44, 57, 60, 142
BstV2I	GAAGAC	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 86
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	96, 262
CviAII	CATG	4 cut(s)	20, 85, 137, 295
CviJI	RGCY	9 cut(s)	78, 134, 155, 241, 286, 293, 302, 312, 353
CviKI_1	RGCY	9 cut(s)	78, 134, 155, 241, 286, 293, 302, 312, 353
CviQI	GTAC	2 cut(s)	96, 262
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	64, 243
EarI	CTCTTC	2 cut(s)	64, 243
EcoRII	CCWGG	1 cut(s)	211
FaeI	CATG	4 cut(s)	23, 88, 140, 298
FaiI	YATR	5 cut(s)	21, 86, 138, 269, 296
FatI	CATG	4 cut(s)	19, 84, 136, 294
Fnu4HI	GCNGC	4 cut(s)	33, 46, 49, 156
Fsp4HI	GCNGC	4 cut(s)	33, 46, 49, 156
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	4 cut(s)	33, 46, 49, 156
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	234
Hin1II	CATG	4 cut(s)	23, 88, 140, 298
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	3 cut(s)	23, 57, 221
HphI	GGTGA	2 cut(s)	155, 230
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	111
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	325
HpyCH4V	TGCA	6 cut(s)	14, 19, 84, 199, 277, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 299
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	23, 88, 140, 298
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	5 cut(s)	92, 198, 225, 243, 263
Lsp1109I	GCAGC	4 cut(s)	44, 57, 60, 142
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	6 cut(s)	66, 81, 100, 196, 260, 349
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	139, 142, 163, 166, 174, 184, 195, 209, 313
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	283, 299
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	4 cut(s)	23, 88, 140, 298
NmuCI	GTSAC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	23, 57
PkrI	GCNGC	4 cut(s)	34, 47, 50, 157
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	97, 263
RsaNI	GTAC	2 cut(s)	96, 262
RseI	CAYNNNNRTG	1 cut(s)	141
SatI	GCNGC	4 cut(s)	33, 46, 49, 156
Sau3AI	GATC	1 cut(s)	38
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	9 cut(s)	157, 177, 220, 243, 275, 282, 288, 314, 355
SmiMI	CAYNNNNRTG	1 cut(s)	141
SpeI	ACTAGT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	211
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	23, 57
TscAI	CASTG	2 cut(s)	21, 86
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	4 cut(s)	32, 45, 48, 155
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	3 cut(s)	36, 101, 311
TspRI	CASTG	2 cut(s)	21, 86
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.