Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015875

Physical Location & Seq

Genomic Coordinates Reverse (-)

19062847 .. 19063369

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGGAAGCTCAAACTCAAACCCAAGTTTCCAAATCTACATTCAAGAGAAAGCAAAGAAAAACCCAGCAAAAATCTCACATGGGTAATGCAGTGCATCAATCTTTATCCAGCTTTAACCAACTGAGAGCAGAGTCTACTCAACGAAGAGCCCGAAAACAGAGAAGGGAAGAGTGCATGAAGACTAATCAGCCCAGTGATGTAAAGAATGGTGGTGAAGAAGATGGTGACAAGGAGGAGGAGGTGGAGAAGAAGATTGAGGCATTGCAGCGGATTGTGCCAGGGGGGGAGTCACTTGGAGTTGACAAGCTGTTTGAAGAGACTGCTGGGTACATAATGGCCTTGCAGGGTCAGCTCAAAGCCATGAAAGCTCTTGCAAGCTTTGTTGAAGGTTTGGAGAAAGAGAAGAGGAAGTTTGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

9.35

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42870 AT3G58850
fragaria_vesca	FvH4_4g34850 FvH4_6g38230
prunus_persica	Prupe.3G172700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151491
rosa_laevigata	RLG00000005848
rosa_multiflora	Rmu_sc0000940.1_g000019
rosa_roxburghii	Rroxscaffold_2G00096420
rosa_rugosa	Rorug02G0426600
rosa_samantha	Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana	Rw2G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	1 cut(s)	271
AfaI	GTAC	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	46, 317, 389
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	6 cut(s)	11, 114, 310, 355, 371, 381
AluI	AGCT	6 cut(s)	11, 114, 310, 355, 371, 381
Alw26I	GTCTC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AsuHPI	GGTGA	2 cut(s)	227, 239
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	251, 254
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	2 cut(s)	66, 326
BshFI	GGCC	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	282
Bst6I	CTCTTC	4 cut(s)	142, 165, 312, 401
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 352, 368
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 202
Cac8I	GCNNGC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	82, 178, 364
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	125
Eam1104I	CTCTTC	4 cut(s)	142, 165, 312, 401
EarI	CTCTTC	4 cut(s)	142, 165, 312, 401
Eco24I	GRGCYC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	3 cut(s)	85, 181, 367
FaiI	YATR	4 cut(s)	83, 179, 335, 365
FatI	CATG	3 cut(s)	81, 177, 363
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
GsaI	CCCAGC	2 cut(s)	70, 330
HaeIII	GGCC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	85, 181, 367
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	2 cut(s)	134, 290
HphI	GGTGA	2 cut(s)	227, 239
Hpy166II	GTNNAC	2 cut(s)	138, 304
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	138, 304
HpyAV	CCTTC	2 cut(s)	159, 383
HpyCH4V	TGCA	6 cut(s)	92, 97, 177, 268, 346, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 352, 368
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	85, 181, 367
LguI	GCTCTTC	1 cut(s)	142
LpnPI	CCDG	7 cut(s)	80, 124, 208, 267, 294, 312, 332
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	227, 291
MboII	GAAGA	9 cut(s)	159, 182, 193, 230, 233, 262, 265, 329, 418
MhlI	GDGCHC	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	143, 299
MnlI	CCTC	6 cut(s)	229, 232, 235, 253, 402, 413
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	277, 352, 368
NlaIII	CATG	3 cut(s)	85, 181, 367
NmuCI	GTSAC	2 cut(s)	227, 291
PciSI	GCTCTTC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	2 cut(s)	142, 298
PpsI	GAGTC	2 cut(s)	142, 298
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	2 cut(s)	66, 326
PspGI	CCWGG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	269
SchI	GAGTC	2 cut(s)	143, 299
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	9 cut(s)	13, 116, 246, 312, 357, 373, 383, 394, 424
SfaNI	GCATC	1 cut(s)	106
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	99, 202
TseFI	GTSAC	2 cut(s)	227, 291
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	227, 291
TspDTI	ATGAA	2 cut(s)	194, 380
TspRI	CASTG	2 cut(s)	99, 202
XmiI	GTMKAC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.