RLG00000005848
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015875
Physical Location & Seq
Forward (+)
2328478 .. 2328919
442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005848

Sequence Viewer

Length: 408 bp
ATGCATTTATATCCCCTCCTCCTCTTCTTCCTCCTCCTCATCATTCACACTTCACGCCCTTCCTTCCTTCGTCTTCACTGTTATTTGAATTGTGCTGTAAAATACCGTCGGGTGTTCGAACATGAGGTCGAGAAGGAGGCGGCCGAGTGCGGTGGGGGGAAGACGACGTCGTGTTGGCGGTGGAGGGAGGACGTCGAGGACTGTGAGAGTGAAGGTGAAGAAGCTGCAAATGCTGATTCCGGGAGGGAGAGGGCTGGAGGCGGAGAGGCTGTTTCGCCACACGGCGGATTACATAATGTATTTGAGGTTGCAAGTCGATGTTTTGCAAGCGCTTTCCAAGATTTACAAGCTGTGAGGATAGTGTTAATCACCATGCGCCTGTTAGTCTCCAATCTTATTTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

5.85

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42870 AT3G58850
fragaria_vesca FvH4_4g34850 FvH4_6g38230
prunus_persica Prupe.3G172700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151491
rosa_laevigata RLG00000005848
rosa_multiflora Rmu_sc0000940.1_g000019
rosa_roxburghii Rroxscaffold_2G00096420
rosa_rugosa Rorug02G0426600
rosa_samantha Rh2AG487300 Rh2BG499700 Rh2CG473700 Rh2DG510900
rosa_wichuraiana Rw2G039940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 170, 195
AciI CCGC 5 cut(s) 140, 150, 178, 261, 285
AcoI YGGCCR 1 cut(s) 141
AcyI GRCGYC 2 cut(s) 167, 192
AfeI AGCGCT 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 88
AjuI GAANNNNNNNTTGG 1 cut(s) 383
AluBI AGCT 2 cut(s) 224, 350
AluI AGCT 2 cut(s) 224, 350
Alw26I GTCTC 1 cut(s) 391
Aor51HI AGCGCT 1 cut(s) 331
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 2 cut(s) 332, 378
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 227, 361
AsuII TTCGAA 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 65, 167
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 298
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 391
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 2 cut(s) 141, 225
BlsI GCNGC 2 cut(s) 142, 226
Bme1390I CCNGG 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 241
BpiI GAAGAC 2 cut(s) 65, 167
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 241
BsaHI GRCGYC 2 cut(s) 167, 192
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 284
BseRI GAGGAG 4 cut(s) 8, 11, 23, 26
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 391
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 117
BspACI CCGC 5 cut(s) 140, 150, 178, 261, 285
BspANI GGCC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 117
BssNI GRCGYC 2 cut(s) 167, 192
Bst4CI ACNGT 3 cut(s) 80, 107, 203
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 2 cut(s) 167, 192
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 332, 378
BstMAI GTCTC 1 cut(s) 391
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 2 cut(s) 65, 167
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 2 cut(s) 332, 378
CviAII CATG 3 cut(s) 122, 373, 403
CviJI RGCY 5 cut(s) 143, 224, 254, 269, 350
CviKI_1 RGCY 5 cut(s) 143, 224, 254, 269, 350
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 2 cut(s) 276, 300
EclXI CGGCCG 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 331
Eco52I CGGCCG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 125, 376, 406
FaiI YATR 5 cut(s) 10, 123, 294, 374, 404
FatI CATG 3 cut(s) 121, 372, 402
Fnu4HI GCNGC 2 cut(s) 141, 225
Fsp4HI GCNGC 2 cut(s) 141, 225
GlaI GCGC 2 cut(s) 331, 377
GluI GCNGC 2 cut(s) 141, 225
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 332, 378
Hin1I GRCGYC 2 cut(s) 167, 192
Hin1II CATG 3 cut(s) 125, 376, 406
Hin6I GCGC 2 cut(s) 330, 376
HinP1I GCGC 2 cut(s) 330, 376
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 240
HphI GGTGA 2 cut(s) 227, 361
Hpy188III TCNNGA 1 cut(s) 130
Hpy99I CGWCG 4 cut(s) 111, 169, 172, 197
HpyAV CCTTC 5 cut(s) 69, 73, 77, 127, 206
HpyCH4III ACNGT 3 cut(s) 80, 107, 203
HpyCH4IV ACGT 2 cut(s) 167, 192
HpyCH4V TGCA 4 cut(s) 4, 227, 311, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpySE526I ACGT 2 cut(s) 167, 192
Hsp92I GRCGYC 2 cut(s) 167, 192
Hsp92II CATG 3 cut(s) 125, 376, 406
HspAI GCGC 2 cut(s) 330, 376
LpnPI CCDG 3 cut(s) 240, 253, 392
Lsp1109I GCAGC 1 cut(s) 211
MaeII ACGT 2 cut(s) 167, 192
MboII GAAGA 5 cut(s) 16, 19, 65, 172, 230
MluCI AATT 1 cut(s) 88
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 365
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 241
NlaIII CATG 3 cut(s) 125, 376, 406
NmeAIII GCCGAG 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 117
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 2 cut(s) 142, 226
PsyI GACNNNGTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 2 cut(s) 141, 225
ScrFI CCNGG 1 cut(s) 241
SetI ASST 7 cut(s) 129, 170, 195, 217, 226, 309, 352
SfuI TTCGAA 1 cut(s) 117
Sse9I AATT 1 cut(s) 88
SsiI CCGC 5 cut(s) 140, 150, 178, 261, 285
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 80, 107, 203
TaiI ACGT 2 cut(s) 170, 195
TaqI TCGA 4 cut(s) 117, 129, 195, 316
TasI AATT 1 cut(s) 88
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 391
TspRI CASTG 1 cut(s) 83
Tth111I GACNNNGTC 1 cut(s) 166
ZraI GACGTC 2 cut(s) 168, 193
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.