AT2G42975

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012983
Physical Location & Seq
Forward (+)
17873869 .. 17874936
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42975.1

Sequence Viewer

Length: 564 bp
ATGGCCTTGAACTTCTTCTCCACTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCTCGATCCAAACAGAGCCATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGTGTCCGCTCCGAGCGAAGTGAAATCGGCGTCACTGACGACAACAACAACAACAACGATACTTCTTCGTCTTCTTTCTCCGGTTCTTCGTCTTCTTCATCAGTACGCACACAACTAGATCTCCTTGAGCAGCTAACTTCAACAAGTGATGGGTACTTAAGTGATGGTGGTGGCTCAAGAGGACTCACTATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGATGATTTCAGCATTCCCTTAGGCAAGAACTTAAAGAAAGTGAGTCCTAAATTCTTAACGATATCTCAGAAAAGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTCTTTGCTACTATTGGCGCCTTTGTAATCCTTCCTCCTTTGGTCATTCTAGCTATTGCTATCTTAACTGGCTATGTTCAACTCTTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.26

Weight (kDa)

9.05

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42975
fragaria_vesca FvH4_6g38570
malus_domestica MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica Prupe.3G176400_v2.0.a1
pyrus_communis pycom09g06910 pycom17g13010
rosa_chinensis RchiOBHm_Chr2g0151981
rosa_laevigata RLG00000020596
rosa_multiflora Rmu_sc0017048.1_g000004
rosa_roxburghii Rroxscaffold_2G00096080
rosa_rugosa Rorug02G0430000
rosa_samantha Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 488
AccBSI CCGCTC 1 cut(s) 123
AciI CCGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 392
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 144, 489
AfaI GTAC 2 cut(s) 219, 269
AfiI CCNNNNNNNGG 1 cut(s) 445
AflII CTTAAG 1 cut(s) 271
AflIII ACRYGT 2 cut(s) 113, 115
AgsI TTSAA 4 cut(s) 10, 42, 255, 551
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 3 cut(s) 247, 435, 524
AluI AGCT 3 cut(s) 247, 435, 524
Alw26I GTCTC 3 cut(s) 333, 421, 454
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 23, 344
AxyI CCTNAGG 1 cut(s) 361
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BanI GGYRCC 1 cut(s) 488
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 177, 198
BbvI GCAGC 1 cut(s) 256
BccI CCATC 4 cut(s) 55, 84, 257, 272
BcoDI GTCTC 3 cut(s) 333, 421, 454
BfaI CTAG 2 cut(s) 230, 521
BfoI RGCGCY 1 cut(s) 492
BfrI CTTAAG 1 cut(s) 271
BglII AGATCT 1 cut(s) 232
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 177, 198
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 260, 274
BsaAI YACGTR 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 144, 489
BsaI GGTCTC 1 cut(s) 454
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 3 cut(s) 32, 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 544
Bse21I CCTNAGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 422, 467
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 488
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 3 cut(s) 333, 421, 454
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 454
Bsp143I GATC 2 cut(s) 62, 232
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 421, 466
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 488
BspTI CTTAAG 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 544
BssMI GATC 2 cut(s) 62, 232
BssNI GRCGYC 2 cut(s) 144, 489
Bst6I CTCTTC 3 cut(s) 33, 103, 560
BstACI GRCGYC 2 cut(s) 144, 489
BstAFI CTTAAG 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 361, 408, 453
BstENI CCTNNNNNAGG 1 cut(s) 443
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 2 cut(s) 65, 235
BstMAI GTCTC 3 cut(s) 333, 421, 454
BstMBI GATC 2 cut(s) 62, 232
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 177, 198
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 361
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 1 cut(s) 491
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 218, 268
CviJI RGCY 8 cut(s) 5, 75, 247, 288, 320, 435, 524, 543
CviKI_1 RGCY 8 cut(s) 5, 75, 247, 288, 320, 435, 524, 543
CviQI GTAC 2 cut(s) 218, 268
DdeI CTNAG 3 cut(s) 361, 408, 453
DinI GGCGCC 1 cut(s) 490
DpnI GATC 2 cut(s) 64, 234
DpnII GATC 2 cut(s) 62, 232
Eam1104I CTCTTC 3 cut(s) 33, 103, 560
EarI CTCTTC 3 cut(s) 33, 103, 560
Eco31I GGTCTC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRV GATATC 1 cut(s) 405
EgeI GGCGCC 1 cut(s) 490
EheI GGCGCC 1 cut(s) 490
Esp3I CGTCTC 1 cut(s) 333
FaiI YATR 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 2 cut(s) 230, 521
GlaI GCGC 1 cut(s) 490
GluI GCNGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 195
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 2 cut(s) 144, 489
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 3 cut(s) 297, 385, 464
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 23, 344
Hpy188I TCNGA 3 cut(s) 127, 411, 456
Hpy188III TCNNGA 3 cut(s) 60, 291, 308
HpyAV CCTTC 2 cut(s) 95, 512
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 91
HpyF3I CTNAG 3 cut(s) 361, 408, 453
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 2 cut(s) 144, 489
HspAI GCGC 1 cut(s) 489
KasI GGCGCC 1 cut(s) 488
Kzo9I GATC 2 cut(s) 62, 232
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 4 cut(s) 120, 208, 306, 525
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 2 cut(s) 230, 521
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 3 cut(s) 145, 308, 332
MalI GATC 2 cut(s) 64, 234
MbiI CCGCTC 1 cut(s) 123
MboI GATC 2 cut(s) 62, 232
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 1 cut(s) 232
MluCI AATT 3 cut(s) 36, 314, 392
Mly113I GGCGCC 1 cut(s) 489
MlyI GAGTC 2 cut(s) 291, 394
MnlI CCTC 6 cut(s) 67, 114, 287, 439, 450, 516
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 7 cut(s) 272, 374, 398, 423, 441, 536, 562
MspCI CTTAAG 1 cut(s) 271
MspI CCGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 354
NarI GGCGCC 1 cut(s) 489
NdeII GATC 2 cut(s) 62, 232
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 3 cut(s) 145, 308, 332
PctI GAATGC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 2 cut(s) 291, 393
PluTI GGCGCC 1 cut(s) 492
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 2 cut(s) 291, 393
Ppu21I YACGTR 1 cut(s) 116
PspCI CACGTG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 490
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 219, 269
RsaNI GTAC 2 cut(s) 218, 268
SaqAI TTAA 7 cut(s) 272, 374, 398, 423, 441, 536, 562
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 62, 232
SchI GAGTC 2 cut(s) 291, 394
SetI ASST 6 cut(s) 118, 249, 437, 441, 450, 526
SfoI GGCGCC 1 cut(s) 490
SmlI CTYRAG 3 cut(s) 239, 271, 289
SmoI CTYRAG 3 cut(s) 239, 271, 289
Sse9I AATT 3 cut(s) 36, 314, 392
SsiI CCGC 1 cut(s) 121
SspDI GGCGCC 1 cut(s) 488
SspMI CTAG 2 cut(s) 230, 521
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 61
TasI AATT 3 cut(s) 36, 314, 392
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 7 cut(s) 272, 374, 398, 423, 441, 536, 562
Tru9I TTAA 7 cut(s) 272, 374, 398, 423, 441, 536, 562
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 3 cut(s) 145, 308, 332
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 3 cut(s) 145, 308, 332
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 230, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.