Prupe.3G176400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012983
Physical Location & Seq
Forward (+)
19365235 .. 19366548
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G176400.1

Sequence Viewer

Length: 570 bp
ATGGCCCTGAATGTAACTGCTGCTTCTCTCTACCCGAACCCTTCTCCATTTCCTCCTTCTTCAATTCCTCCTCATCCTCCATTTCTAAACCCAAAACGCAAACCCCACTTCAGGTCCAATACTACTTTTAGAACTTCTGCTCAGTCAGACAGAATTGAGAGTTGGGTTAAAGACGAAGACCCTCCTGCTTCTCTCTCCGGATCTTCGTCATCTGCTCGCACACAGCTGAATCTTCTGGAGCAACTTACCTCTACTAGCTCATCAGTTGATGGTGGTTATGAGAGTGATGGTAGCTCCCGGAAACTTACAATTCGTGACCAGCTAGCGCAGTTGGTTGGGGACAGAGACGGCAATTTCAGCATTCCACTTGGTAAAAATTTTAAAAAGGTGATTGCCAAAGAATTAACCATCTCGCAGAAGAGAAATATCAAAAGACAGGCTTACTTAAACGAAGTATCTAAGAGGAATGATTCAGTTTTCTTTGCCACCATTGGAGCATTTGTACTTGTTCCACCTCTTGTAATATTAGGAATTGCTATATTAACAGGTTATGTACAGCTTTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.69

Weight (kDa)

9.82

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42975
fragaria_vesca FvH4_6g38570
malus_domestica MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica Prupe.3G176400_v2.0.a1
pyrus_communis pycom09g06910 pycom17g13010
rosa_chinensis RchiOBHm_Chr2g0151981
rosa_laevigata RLG00000020596
rosa_multiflora Rmu_sc0017048.1_g000004
rosa_roxburghii Rroxscaffold_2G00096080
rosa_rugosa Rorug02G0430000
rosa_samantha Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 197
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 2 cut(s) 504, 555
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 5 cut(s) 226, 258, 294, 322, 559
AluI AGCT 5 cut(s) 226, 258, 294, 322, 559
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 4, 114
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 263, 281, 416
BceAI ACGGC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 255, 323
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 4, 114
BmrFI CCNGG 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 298
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 197
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 198, 298
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 1 cut(s) 200
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 553
BssMI GATC 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 217, 324
BstDEI CTNAG 2 cut(s) 141, 459
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 217, 324
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 4, 114
Csp6I GTAC 2 cut(s) 503, 554
CviJI RGCY 7 cut(s) 5, 226, 258, 294, 322, 440, 559
CviKI_1 RGCY 7 cut(s) 5, 226, 258, 294, 322, 440, 559
CviQI GTAC 2 cut(s) 503, 554
DdeI CTNAG 2 cut(s) 141, 459
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
DraI TTTAAA 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 3 cut(s) 279, 539, 552
FalI AAGNNNNNCTT 2 cut(s) 424, 456
FaqI GGGAC 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 255, 323
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 198, 298
HhaI GCGC 1 cut(s) 328
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 2 cut(s) 229, 470
HpaII CCGG 2 cut(s) 198, 298
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 198, 236, 314
HpyAV CCTTC 2 cut(s) 51, 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 141, 459
HspAI GCGC 1 cut(s) 326
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 3 cut(s) 238, 299, 494
LpnPI CCDG 9 cut(s) 20, 97, 198, 211, 221, 311, 332, 422, 531
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 2 cut(s) 255, 323
MaeIII GTNAC 2 cut(s) 13, 314
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 5 cut(s) 51, 188, 195, 224, 430
MflI RGATCY 1 cut(s) 200
MluCI AATT 7 cut(s) 63, 153, 309, 352, 376, 401, 531
MnlI CCTC 8 cut(s) 63, 78, 81, 87, 192, 259, 456, 525
MroI TCCGGA 1 cut(s) 197
MseI TTAA 5 cut(s) 168, 381, 404, 446, 542
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 2 cut(s) 198, 298
MspR9I CCNGG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 298
NdeII GATC 1 cut(s) 200
NheI GCTAGC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 314
PctI GAATGC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 229, 470
PfoI TCCNGGA 1 cut(s) 296
PkrI GCNGC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 4, 114
PsuI RGATCY 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 2 cut(s) 504, 555
RsaNI GTAC 2 cut(s) 503, 554
SaqAI TTAA 5 cut(s) 168, 381, 404, 446, 542
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 2 cut(s) 4, 114
ScrFI CCNGG 1 cut(s) 298
SinI GGWCC 1 cut(s) 114
Sse9I AATT 7 cut(s) 63, 153, 309, 352, 376, 401, 531
SspI AATATT 1 cut(s) 525
SspMI CTAG 2 cut(s) 255, 323
StyD4I CCNGG 1 cut(s) 296
TasI AATT 7 cut(s) 63, 153, 309, 352, 376, 401, 531
TatI WGTACW 2 cut(s) 502, 553
TfiI GAWTC 2 cut(s) 229, 470
Tru1I TTAA 5 cut(s) 168, 381, 404, 446, 542
Tru9I TTAA 5 cut(s) 168, 381, 404, 446, 542
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 1 cut(s) 376
XspI CTAG 2 cut(s) 255, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.