MD09G1149700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012983
Physical Location & Seq
Reverse (-)
11752554 .. 11753966
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1149700.v1.1.491

Sequence Viewer

Length: 552 bp
ATGGCCCTGAATTTAACTGCTGCTTCTTCATTTTCTTCTTCTTTTAGTCCTCCTCCTCCATTTCTAAACCCAAAGCACAAACCCCACCTCAAGTTGTATCCTTTTAGAACATATGCAGCTCATTCGTCAGACGGAACTGAGAGTTGGGTTAAAGAGGAAGACCCTCCCGCTTCTTTCTCCGGATCATCGTCATCTGCTCGCACACAGCTGGATCTTTTGGAGCAACTTACCTCTTCTAGCTCATCAGTTAACGCCAGTTATGTTAGTGATGGCAACTCCCGAAAACTTACAATCCGTCAGCAGCTAGCGCAGTTGGTTGGGGACAGAGACGGGGATTTCGTCATTCCACTCGGTAAAAACTTTAAAAAGGTGAGTGCCAAGGCTCTAACCGTCTCTCAGAAGCGAAATATCAAACGACAGGCTTACTTAAACGAAGTATCGAAGAGGAATGATTCAGTTTTCTTTGCCACCATTGGAGCATTTGTGCTTGTTCCACCTCTTGTAATATTAGGAATCGCCATATTGACAGGTTATGTACAGCTTTTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.92

Weight (kDa)

9.73

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42975
fragaria_vesca FvH4_6g38570
malus_domestica MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica Prupe.3G176400_v2.0.a1
pyrus_communis pycom09g06910 pycom17g13010
rosa_chinensis RchiOBHm_Chr2g0151981
rosa_laevigata RLG00000020596
rosa_multiflora Rmu_sc0017048.1_g000004
rosa_roxburghii Rroxscaffold_2G00096080
rosa_rugosa Rorug02G0430000
rosa_samantha Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 190, 219
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 537
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 5 cut(s) 119, 208, 240, 304, 541
AluI AGCT 5 cut(s) 119, 208, 240, 304, 541
Alw26I GTCTC 2 cut(s) 321, 397
AlwI GGATC 2 cut(s) 190, 219
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 20, 116, 301
ApoI RAATTY 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 382
AsuNHI GCTAGC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 7, 128, 313
BccI CCATC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciVI GTATCC 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 321, 397
BfaI CTAG 2 cut(s) 237, 305
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 3 cut(s) 21, 117, 302
BlsI GCNGC 3 cut(s) 22, 118, 303
BmgT120I GGNCC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bse1I ACTGG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 129, 410
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 42, 45
BseXI GCAGC 3 cut(s) 7, 128, 313
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 321, 397
BsmBI CGTCTC 2 cut(s) 321, 397
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 179
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 2 cut(s) 182, 211
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 130, 409
BspEI TCCGGA 1 cut(s) 179
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 2 cut(s) 190, 219
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 182, 211
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 238, 437
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 199, 306
BstDEI CTNAG 2 cut(s) 138, 396
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 2 cut(s) 185, 214
BstMAI GTCTC 2 cut(s) 321, 397
BstMBI GATC 2 cut(s) 182, 211
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 7, 128, 313
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 199, 306
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 536
CviAII CATG 1 cut(s) 549
CviJI RGCY 8 cut(s) 5, 119, 208, 240, 304, 383, 422, 541
CviKI_1 RGCY 8 cut(s) 5, 119, 208, 240, 304, 383, 422, 541
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 2 cut(s) 138, 396
DpnI GATC 2 cut(s) 184, 213
DpnII GATC 2 cut(s) 182, 211
DraI TTTAAA 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 238, 437
EarI CTCTTC 2 cut(s) 238, 437
Eco130I CCWWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 2 cut(s) 321, 397
FaeI CATG 1 cut(s) 552
FaiI YATR 6 cut(s) 112, 114, 261, 521, 534, 550
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 548
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 21, 117, 302
Fsp4HI GCNGC 3 cut(s) 21, 117, 302
FspBI CTAG 2 cut(s) 237, 305
GlaI GCGC 1 cut(s) 309
GluI GCNGC 3 cut(s) 21, 117, 302
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 310
Hin1II CATG 1 cut(s) 552
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 2 cut(s) 452, 513
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 130, 399
Hpy188III TCNNGA 2 cut(s) 180, 279
Hpy8I GTNNAC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 2 cut(s) 138, 396
Hsp92II CATG 1 cut(s) 552
HspAI GCGC 1 cut(s) 308
Kpn2I TCCGGA 1 cut(s) 179
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 182, 211
LmnI GCTCC 2 cut(s) 220, 476
LpnPI CCDG 6 cut(s) 20, 193, 194, 268, 404, 513
Lsp1109I GCAGC 3 cut(s) 7, 128, 313
MaeI CTAG 2 cut(s) 237, 305
MalI GATC 2 cut(s) 184, 213
MboI GATC 2 cut(s) 182, 211
MboII GAAGA 6 cut(s) 18, 27, 30, 170, 225, 454
MflI RGATCY 1 cut(s) 211
MluCI AATT 1 cut(s) 10
MnlI CCTC 9 cut(s) 60, 63, 66, 98, 148, 174, 241, 438, 507
MroI TCCGGA 1 cut(s) 179
MseI TTAA 5 cut(s) 14, 150, 249, 363, 428
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 182, 211
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 2 cut(s) 452, 513
PkrI GCNGC 3 cut(s) 22, 118, 303
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
SaqAI TTAA 5 cut(s) 14, 150, 249, 363, 428
SatI GCNGC 3 cut(s) 21, 117, 302
Sau3AI GATC 2 cut(s) 182, 211
Sau96I GGNCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 10
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 507
SspMI CTAG 2 cut(s) 237, 305
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 440
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 535
TfiI GAWTC 2 cut(s) 452, 513
Tru1I TTAA 5 cut(s) 14, 150, 249, 363, 428
Tru9I TTAA 5 cut(s) 14, 150, 249, 363, 428
TseI GCWGC 3 cut(s) 20, 116, 301
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 2 cut(s) 147, 284
XapI RAATTY 1 cut(s) 10
XspI CTAG 2 cut(s) 237, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.