Rh2DG514200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012983
Physical Location & Seq
Forward (+)
73830346 .. 73831861
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG514200.1

Sequence Viewer

Length: 588 bp
ATGGCCCTGAGTCTAACTGCTGCTTCTCTATACCCAAACCCTTCTTTCTCTTCTCCTTCTTGTTCTTCTAGTCCTTCTTCATTTCTAAACCCAAAGCGCAAACCCCCTCTCAAGCCTTACCCTTATCCATCTTCTTTCAGAACACCTGCTGCTCAGTCTGAGGGAGCTGAGAGTTGGATTAAAGAGGAAGACCGTTCTGCTTCTTCATCTGGATCTTCATCGTCTGCTCAAACACGTCTGGACCTTTTGGAGCAACTTACCTCAACTAGCTCATCAGTTGACGGAGGTTATGAGAGTGATGCTAGCTCCCAAAAACTTACGATCCGTGAGCAACTAGCACAGTTGTTTGCGGATAGAGATGGTGATTTCACAATTCCACTGGGTAAAAAGTTCAAAAAGGTGAGTCCCAAGGTTTTAACCATCTCACAGAAGCGGAACATCAGAAGACAGGCTTACTTAAATGAAGTATCTCAGAGGAATGATTCAACTTTCTTTGCCACCATTGGAGCATTTGTACTTGTTCCACCTCTTGTAATATTAGGAATTGCTATAGCAACAGGCTATGTACAGCTGAGTTTCCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.12

Weight (kDa)

9.38

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42975
fragaria_vesca FvH4_6g38570
malus_domestica MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica Prupe.3G176400_v2.0.a1
pyrus_communis pycom09g06910 pycom17g13010
rosa_chinensis RchiOBHm_Chr2g0151981
rosa_laevigata RLG00000020596
rosa_multiflora Rmu_sc0017048.1_g000004
rosa_roxburghii Rroxscaffold_2G00096080
rosa_rugosa Rorug02G0430000
rosa_samantha Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AciI CCGC 2 cut(s) 350, 433
AclWI GGATC 2 cut(s) 220, 316
AfaI GTAC 2 cut(s) 516, 567
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 394, 486
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 4 cut(s) 167, 270, 306, 571
AluI AGCT 4 cut(s) 167, 270, 306, 571
AlwI GGATC 2 cut(s) 220, 316
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 20, 149
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 4, 241
AsuHPI GGTGA 2 cut(s) 374, 412
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 195, 451
BbvI GCAGC 2 cut(s) 7, 136
BccI CCATC 3 cut(s) 136, 353, 428
BfaI CTAG 4 cut(s) 69, 267, 303, 335
BfmI CTRYAG 1 cut(s) 549
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 2 cut(s) 21, 150
BlsI GCNGC 2 cut(s) 22, 151
Bme18I GGWCC 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 4, 241
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 2 cut(s) 195, 451
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse1I ACTGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 217
BseMII CTCAG 5 cut(s) 150, 159, 167, 485, 563
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 2 cut(s) 7, 136
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 2 cut(s) 212, 321
BspACI CCGC 2 cut(s) 350, 433
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 151, 160, 166, 484, 564
BspMI ACCTGC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 220, 316
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 2 cut(s) 212, 321
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 194, 342
Bst6I CTCTTC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 6 cut(s) 8, 153, 159, 168, 471, 572
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 215, 324
BstMBI GATC 2 cut(s) 212, 321
BstSFI CTRYAG 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 7, 136
BstV2I GAAGAC 2 cut(s) 195, 451
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 4, 241
Csp6I GTAC 2 cut(s) 515, 566
CviJI RGCY 8 cut(s) 5, 115, 167, 270, 306, 452, 561, 571
CviKI_1 RGCY 8 cut(s) 5, 115, 167, 270, 306, 452, 561, 571
CviQI GTAC 2 cut(s) 515, 566
DdeI CTNAG 6 cut(s) 8, 153, 159, 168, 471, 572
DpnI GATC 2 cut(s) 214, 323
DpnII GATC 2 cut(s) 212, 321
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaiI YATR 4 cut(s) 31, 291, 551, 564
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 21, 150
Fsp4HI GCNGC 2 cut(s) 21, 150
FspBI CTAG 4 cut(s) 69, 267, 303, 335
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 21, 150
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 10, 403, 482
HphI GGTGA 2 cut(s) 374, 412
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 140, 160, 443, 474
Hpy188III TCNNGA 2 cut(s) 210, 239
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 51, 66, 84
HpyCH4III ACNGT 2 cut(s) 194, 342
HpyCH4IV ACGT 1 cut(s) 235
HpyF3I CTNAG 6 cut(s) 8, 153, 159, 168, 471, 572
HpySE526I ACGT 1 cut(s) 235
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 212, 321
LmnI GCTCC 4 cut(s) 164, 250, 311, 506
LpnPI CCDG 7 cut(s) 20, 159, 195, 224, 365, 434, 543
Lsp1109I GCAGC 2 cut(s) 7, 136
LweI GCATC 1 cut(s) 289
MaeI CTAG 4 cut(s) 69, 267, 303, 335
MaeII ACGT 1 cut(s) 235
MalI GATC 2 cut(s) 214, 323
MboI GATC 2 cut(s) 212, 321
MboII GAAGA 8 cut(s) 42, 57, 69, 123, 195, 200, 207, 456
MflI RGATCY 1 cut(s) 212
MluCI AATT 3 cut(s) 372, 543, 583
MlyI GAGTC 2 cut(s) 19, 412
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 7 cut(s) 117, 154, 178, 271, 278, 468, 537
MseI TTAA 5 cut(s) 180, 416, 458, 582, 586
MspA1I CMGCKG 1 cut(s) 571
NdeII GATC 2 cut(s) 212, 321
NheI GCTAGC 1 cut(s) 302
PacI TTAATTAA 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 482
PkrI GCNGC 2 cut(s) 22, 151
PleI GAGTC 2 cut(s) 18, 411
PpsI GAGTC 2 cut(s) 18, 411
PspPI GGNCC 2 cut(s) 4, 241
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 2 cut(s) 516, 567
RsaNI GTAC 2 cut(s) 515, 566
SaqAI TTAA 5 cut(s) 180, 416, 458, 582, 586
SatI GCNGC 2 cut(s) 21, 150
Sau3AI GATC 2 cut(s) 212, 321
Sau96I GGNCC 2 cut(s) 4, 241
SchI GAGTC 2 cut(s) 19, 412
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 372, 543, 583
SsiI CCGC 2 cut(s) 350, 433
SspI AATATT 1 cut(s) 537
SspMI CTAG 4 cut(s) 69, 267, 303, 335
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 194, 342
TaiI ACGT 1 cut(s) 238
TasI AATT 3 cut(s) 372, 543, 583
TatI WGTACW 2 cut(s) 514, 565
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 5 cut(s) 180, 416, 458, 582, 586
Tru9I TTAA 5 cut(s) 180, 416, 458, 582, 586
TscAI CASTG 1 cut(s) 384
TseI GCWGC 2 cut(s) 20, 149
TspDTI ATGAA 4 cut(s) 69, 195, 207, 477
TspGWI ACGGA 2 cut(s) 297, 314
TspRI CASTG 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 4 cut(s) 69, 267, 303, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.