pycom09g06910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012983
Physical Location & Seq
Reverse (-)
5111653 .. 5112968
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06910.3

Sequence Viewer

Length: 564 bp
ATGGCCCTGAGTTTTACTGCTGCTTCTTCATTTTCTTCTTCTTTTAGTCCTCCTCCTCCTCCTCCTCCTCCATTTCTAAACCCAAAGCACAAACCCCACCTCAAGTTGCATCCCTTTAGAACATATGCAGCTCATTCGTCAGACGGAACTGAGAGTTGGGTTAAAGAGGAAGACCCTCCTGCTTCTTTATCCGGATCATCGTCATCTGCTCGCGCACAGCTGGATCTTTTGGAGCAACTTACCTCTTCTAGCTCATCAGTTGACGCCAGTTATGTTAGTGATGGCAACTCCCGAAAACTTACAATCCGTCAGCAGCTAGCGCAGTTGGTTGGGGACAGAGACGGGGATTTCATCATTCCACTAGGTAAAAACTTAAAAAAGGTGAGTGCCAAGGCTCTAACCGTCTCTCAGAAGCGAAATATCAAACGACAGGCTTACTTAAACGAAGTATCGAAGAGGAATGATTCAGTTTTCTTTGCCACCATTGGAGCATTTGTGCTTGTTCCACCTCTTGTAATATTAGGAATCGCCATATTGACAGGTTATGTACAGCTTTTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.21

Weight (kDa)

9.65

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42975
fragaria_vesca FvH4_6g38570
malus_domestica MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica Prupe.3G176400_v2.0.a1
pyrus_communis pycom09g06910 pycom17g13010
rosa_chinensis RchiOBHm_Chr2g0151981
rosa_laevigata RLG00000020596
rosa_multiflora Rmu_sc0017048.1_g000004
rosa_roxburghii Rroxscaffold_2G00096080
rosa_rugosa Rorug02G0430000
rosa_samantha Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AccIII TCCGGA 1 cut(s) 191
AclWI GGATC 2 cut(s) 202, 231
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 549
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AluBI AGCT 5 cut(s) 131, 220, 252, 316, 553
AluI AGCT 5 cut(s) 131, 220, 252, 316, 553
Alw26I GTCTC 2 cut(s) 333, 409
AlwI GGATC 2 cut(s) 202, 231
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 20, 128, 313
AspLEI GCGC 2 cut(s) 215, 322
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 394
AsuNHI GCTAGC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 7, 140, 325
BccI CCATC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BcoDI GTCTC 2 cut(s) 333, 409
BfaI CTAG 3 cut(s) 249, 317, 362
BisI GCNGC 3 cut(s) 21, 129, 314
BlsI GCNGC 3 cut(s) 22, 130, 315
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 118
BmtI GCTAGC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bse1I ACTGG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 141, 422
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 6 cut(s) 42, 45, 48, 51, 54, 57
BseXI GCAGC 3 cut(s) 7, 140, 325
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 333, 409
BsmBI CGTCTC 2 cut(s) 333, 409
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 191
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 2 cut(s) 194, 223
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 142, 421
BspEI TCCGGA 1 cut(s) 191
BspFNI CGCG 1 cut(s) 213
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 202, 231
BsrGI TGTACA 1 cut(s) 547
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 194, 223
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 250, 449
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 211, 318
BstDEI CTNAG 3 cut(s) 8, 150, 408
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 2 cut(s) 215, 322
BstKTI GATC 2 cut(s) 197, 226
BstMAI GTCTC 2 cut(s) 333, 409
BstMBI GATC 2 cut(s) 194, 223
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 7, 140, 325
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 211, 318
CfoI GCGC 2 cut(s) 215, 322
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 548
CviAII CATG 1 cut(s) 561
CviJI RGCY 8 cut(s) 5, 131, 220, 252, 316, 395, 434, 553
CviKI_1 RGCY 8 cut(s) 5, 131, 220, 252, 316, 395, 434, 553
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 3 cut(s) 8, 150, 408
DpnI GATC 2 cut(s) 196, 225
DpnII GATC 2 cut(s) 194, 223
Eam1104I CTCTTC 2 cut(s) 250, 449
EarI CTCTTC 2 cut(s) 250, 449
Eco130I CCWWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 2 cut(s) 333, 409
FaeI CATG 1 cut(s) 564
FaiI YATR 6 cut(s) 124, 126, 273, 533, 546, 562
FaqI GGGAC 1 cut(s) 347
FatI CATG 1 cut(s) 560
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 21, 129, 314
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 21, 129, 314
FspBI CTAG 3 cut(s) 249, 317, 362
GlaI GCGC 2 cut(s) 214, 321
GluI GCNGC 3 cut(s) 21, 129, 314
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 272
HhaI GCGC 2 cut(s) 215, 322
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 1 cut(s) 564
Hin6I GCGC 2 cut(s) 213, 320
HinP1I GCGC 2 cut(s) 213, 320
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 464, 525
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 142, 411
Hpy188III TCNNGA 2 cut(s) 192, 291
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 109, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 3 cut(s) 8, 150, 408
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 1 cut(s) 564
HspAI GCGC 2 cut(s) 213, 320
Kpn2I TCCGGA 1 cut(s) 191
Kzo9I GATC 2 cut(s) 194, 223
LmnI GCTCC 2 cut(s) 232, 488
LpnPI CCDG 7 cut(s) 20, 192, 205, 206, 280, 416, 525
Lsp1109I GCAGC 3 cut(s) 7, 140, 325
LweI GCATC 1 cut(s) 118
MaeI CTAG 3 cut(s) 249, 317, 362
MalI GATC 2 cut(s) 196, 225
MboI GATC 2 cut(s) 194, 223
MboII GAAGA 6 cut(s) 18, 27, 30, 182, 237, 466
MflI RGATCY 1 cut(s) 223
MroI TCCGGA 1 cut(s) 191
MseI TTAA 3 cut(s) 162, 374, 440
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 319
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 194, 223
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 564
PfeI GAWTC 2 cut(s) 464, 525
PkrI GCNGC 3 cut(s) 22, 130, 315
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SaqAI TTAA 3 cut(s) 162, 374, 440
SatI GCNGC 3 cut(s) 21, 129, 314
Sau3AI GATC 2 cut(s) 194, 223
Sau96I GGNCC 1 cut(s) 4
SfaNI GCATC 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SspI AATATT 1 cut(s) 519
SspMI CTAG 3 cut(s) 249, 317, 362
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 452
TatI WGTACW 1 cut(s) 547
TfiI GAWTC 2 cut(s) 464, 525
Tru1I TTAA 3 cut(s) 162, 374, 440
Tru9I TTAA 3 cut(s) 162, 374, 440
TseI GCWGC 3 cut(s) 20, 128, 313
TspDTI ATGAA 2 cut(s) 18, 340
TspGWI ACGGA 2 cut(s) 159, 296
XspI CTAG 3 cut(s) 249, 317, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.