Rw0G020210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00908
OG0012983
Physical Location & Seq
Reverse (-)
8249 .. 9767
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020210.1

Sequence Viewer

Length: 537 bp
ATGGCCCTGAGTCTAACTGCTGCTTGTCTATACCCAAACCCTTCTTTCTCTTCTCCTTCTTGTTCTTCTAGTCCTTCTTCATTTCTAAACCCAAAGCGCAAACCCCCTCTCAAGCCTTACCCTTATCCATCTTCTTTCAGAACACCTGCTGCTCAGTCTGAGGGAGCTGAGAGTTGGATTAAAGAGGAAGACCGTTCTGCTTCTTCATCTGGATCTTCATCGTCTGCTCAAACACGTCTGGATCTTTTGGAGCAACTTACCTCAACTAGCTCATCAGTTGACGGAGGTTATGAGAGTGATGCTAGCTCCCAAAAACTTACGATCCGTGAGCAACTAGCTCAGTTGTTTGCGGATAGAGATGGTGATTTCACAATTCCACTGGGTTCAAAAAGAAGACAGGCTTACTTAAATGAAGTATCTCAGAGGAATGATTCAACTTTCTTTGCCACCATTGGAGCATTTGTACTTGTTCCACCTCTTGTAATATTAGGAATTGCTATAGCAACAGGCTATGTACAGCTGAGTTTCCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.13

Weight (kDa)

5.46

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42975
fragaria_vesca FvH4_6g38570
malus_domestica MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica Prupe.3G176400_v2.0.a1
pyrus_communis pycom09g06910 pycom17g13010
rosa_chinensis RchiOBHm_Chr2g0151981
rosa_laevigata RLG00000020596
rosa_multiflora Rmu_sc0017048.1_g000004
rosa_roxburghii Rroxscaffold_2G00096080
rosa_rugosa Rorug02G0430000
rosa_samantha Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AciI CCGC 1 cut(s) 350
AclWI GGATC 3 cut(s) 220, 249, 316
AfaI GTAC 2 cut(s) 465, 516
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 387, 435
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 5 cut(s) 167, 270, 306, 338, 520
AluI AGCT 5 cut(s) 167, 270, 306, 338, 520
AlwI GGATC 3 cut(s) 220, 249, 316
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 20, 149
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 195, 400
BbvI GCAGC 2 cut(s) 7, 136
BccI CCATC 2 cut(s) 136, 353
BfaI CTAG 4 cut(s) 69, 267, 303, 335
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 2 cut(s) 21, 150
BlsI GCNGC 2 cut(s) 22, 151
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 2 cut(s) 195, 400
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bse1I ACTGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 217
BseMII CTCAG 6 cut(s) 150, 159, 167, 353, 434, 512
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 2 cut(s) 7, 136
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 3 cut(s) 212, 241, 321
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 6 cut(s) 151, 160, 166, 352, 433, 513
BspMI ACCTGC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 3 cut(s) 220, 249, 316
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 1 cut(s) 384
BssMI GATC 3 cut(s) 212, 241, 321
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 514
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 7 cut(s) 8, 153, 159, 168, 339, 420, 521
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 215, 244, 324
BstMBI GATC 3 cut(s) 212, 241, 321
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 2 cut(s) 7, 136
BstV2I GAAGAC 2 cut(s) 195, 400
BstX2I RGATCY 2 cut(s) 212, 241
BstYI RGATCY 2 cut(s) 212, 241
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 464, 515
CviJI RGCY 9 cut(s) 5, 115, 167, 270, 306, 338, 401, 510, 520
CviKI_1 RGCY 9 cut(s) 5, 115, 167, 270, 306, 338, 401, 510, 520
CviQI GTAC 2 cut(s) 464, 515
DdeI CTNAG 7 cut(s) 8, 153, 159, 168, 339, 420, 521
DpnI GATC 3 cut(s) 214, 243, 323
DpnII GATC 3 cut(s) 212, 241, 321
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
FaiI YATR 4 cut(s) 31, 291, 500, 513
FalI AAGNNNNNCTT 2 cut(s) 385, 417
Fnu4HI GCNGC 2 cut(s) 21, 150
Fsp4HI GCNGC 2 cut(s) 21, 150
FspBI CTAG 4 cut(s) 69, 267, 303, 335
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 21, 150
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 10, 431
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 140, 160, 423
Hpy188III TCNNGA 2 cut(s) 210, 239
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 51, 66, 84
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 235
HpyF3I CTNAG 7 cut(s) 8, 153, 159, 168, 339, 420, 521
HpySE526I ACGT 1 cut(s) 235
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 212, 241, 321
LmnI GCTCC 4 cut(s) 164, 250, 311, 455
LpnPI CCDG 7 cut(s) 20, 159, 195, 224, 365, 383, 492
Lsp1109I GCAGC 2 cut(s) 7, 136
LweI GCATC 1 cut(s) 289
MaeI CTAG 4 cut(s) 69, 267, 303, 335
MaeII ACGT 1 cut(s) 235
MalI GATC 3 cut(s) 214, 243, 323
MboI GATC 3 cut(s) 212, 241, 321
MboII GAAGA 8 cut(s) 42, 57, 69, 123, 195, 200, 207, 405
MflI RGATCY 2 cut(s) 212, 241
MluCI AATT 3 cut(s) 372, 492, 532
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 7 cut(s) 117, 154, 178, 271, 278, 417, 486
MseI TTAA 4 cut(s) 180, 407, 531, 535
MspA1I CMGCKG 1 cut(s) 520
NdeII GATC 3 cut(s) 212, 241, 321
NheI GCTAGC 1 cut(s) 302
PacI TTAATTAA 1 cut(s) 535
PaqCI CACCTGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 22, 151
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 212, 241
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 2 cut(s) 465, 516
RsaNI GTAC 2 cut(s) 464, 515
SaqAI TTAA 4 cut(s) 180, 407, 531, 535
SatI GCNGC 2 cut(s) 21, 150
Sau3AI GATC 3 cut(s) 212, 241, 321
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 19
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 372, 492, 532
SsiI CCGC 1 cut(s) 350
SspI AATATT 1 cut(s) 486
SspMI CTAG 4 cut(s) 69, 267, 303, 335
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 238
TasI AATT 3 cut(s) 372, 492, 532
TatI WGTACW 2 cut(s) 463, 514
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 4 cut(s) 180, 407, 531, 535
Tru9I TTAA 4 cut(s) 180, 407, 531, 535
TscAI CASTG 1 cut(s) 384
TseI GCWGC 2 cut(s) 20, 149
TspDTI ATGAA 4 cut(s) 69, 195, 207, 426
TspGWI ACGGA 2 cut(s) 297, 314
TspRI CASTG 1 cut(s) 384
XspI CTAG 4 cut(s) 69, 267, 303, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.