Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012983

Physical Location & Seq

Genomic Coordinates Reverse (-)

17310147 .. 17312081

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCCTGAGTCTAACTGCTGCTTCTCTATACCCAAACCCTTCTTTCTCTTCTCCTTCTTGTTCTTTTAGTCCTTCATTTCTAAACCCAAAGCACAAACCCCTCTCAAGCCTTACCCTTATCCATCTTCTTTCAGAACACCTGCTGCTCAGTCTGAGGGAGCTGAGAGCTGGATTAAAGAGGAAGACCGTTCTGCTTCTTCATCTGCAAGTTGCATATTTTCTCAATTTGGAAGCATCATGGAACTGCATACTCTGCCTGTACTATACAACAGTCGGATCTTCATCATCTGCTCAAACACGTCTGGATCTTTTGGAGCAACTTACCTCAACTAGCTCATCAGTTGACGGAGGTTATGAGAGTGATGCTAGCTCCCGAAAACTTACTATCCGTGAGCAACTAGCACAGTTGTTTGGGGATAGAGATGATGATTTCACAATTCCACTGGGTAAAAAGTTCAAAAAGGTGAGTCCCAAGGTTTTAACTATCTCACAGAAGCGGAATATCAGAAGACAGGCTTACTTAAATGAAGTATCTCAGAGGAATGATTCAACTTTCTTTGCCACCATTGGAGCATTTGTACTTGTTCCACCTCTTGTAATATTAGGAATTGCTATAGCAACAGGCTATGTACAGCTAAGTTTCCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.0

Weight (kDa)

9.43

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42975
fragaria_vesca	FvH4_6g38570
malus_domestica	MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica	Prupe.3G176400_v2.0.a1
pyrus_communis	pycom09g06910 pycom17g13010
rosa_chinensis	RchiOBHm_Chr2g0151981
rosa_laevigata	RLG00000020596
rosa_multiflora	Rmu_sc0017048.1_g000004
rosa_roxburghii	Rroxscaffold_2G00096080
rosa_rugosa	Rorug02G0430000
rosa_samantha	Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana	Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	150
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	2 cut(s)	286, 315
AfaI	GTAC	3 cut(s)	263, 582, 633
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	460, 552
AjiI	CACGTC	1 cut(s)	302
AluBI	AGCT	5 cut(s)	163, 170, 336, 372, 637
AluI	AGCT	5 cut(s)	163, 170, 336, 372, 637
AlwI	GGATC	2 cut(s)	286, 315
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	20, 145
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	478
AsuNHI	GCTAGC	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	191, 517
BbvI	GCAGC	2 cut(s)	7, 132
BccI	CCATC	1 cut(s)	132
BfaI	CTAG	3 cut(s)	333, 369, 401
BfmI	CTRYAG	1 cut(s)	615
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	21, 146
BlsI	GCNGC	2 cut(s)	22, 147
BmgBI	CACGTC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	4
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	245, 355
BmtI	GCTAGC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	2 cut(s)	191, 517
BpuEI	CTTGAG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse1I	ACTGG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	474
BseJI	GATNNNNATC	1 cut(s)	283
BseMII	CTCAG	4 cut(s)	146, 155, 163, 551
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	7, 132
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	2 cut(s)	278, 307
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	147, 156, 162, 550
BspMI	ACCTGC	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	286, 315
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	278, 307
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	190, 274, 408
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	6 cut(s)	8, 149, 155, 164, 537, 638
BstKTI	GATC	2 cut(s)	281, 310
BstMBI	GATC	2 cut(s)	278, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	7, 132
BstV2I	GAAGAC	2 cut(s)	191, 517
BstX2I	RGATCY	2 cut(s)	278, 307
BstYI	RGATCY	2 cut(s)	278, 307
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	262, 581, 632
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	9 cut(s)	5, 111, 163, 170, 336, 372, 518, 627, 637
CviKI_1	RGCY	9 cut(s)	5, 111, 163, 170, 336, 372, 518, 627, 637
CviQI	GTAC	3 cut(s)	262, 581, 632
DdeI	CTNAG	6 cut(s)	8, 149, 155, 164, 537, 638
DpnI	GATC	2 cut(s)	280, 309
DpnII	GATC	2 cut(s)	278, 307
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	1 cut(s)	243
FaiI	YATR	8 cut(s)	31, 217, 241, 251, 267, 357, 617, 630
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	21, 146
Fsp4HI	GCNGC	2 cut(s)	21, 146
FspBI	CTAG	3 cut(s)	333, 369, 401
GluI	GCNGC	2 cut(s)	21, 146
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	10, 469, 548
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	5 cut(s)	136, 156, 278, 509, 540
Hpy188III	TCNNGA	2 cut(s)	305, 375
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	51, 66, 84
HpyCH4III	ACNGT	3 cut(s)	190, 274, 408
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	208, 215, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	6 cut(s)	8, 149, 155, 164, 537, 638
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	278, 307
LmnI	GCTCC	4 cut(s)	160, 316, 377, 572
LpnPI	CCDG	8 cut(s)	20, 155, 156, 272, 290, 431, 500, 609
Lsp1109I	GCAGC	2 cut(s)	7, 132
LweI	GCATC	2 cut(s)	245, 355
MaeI	CTAG	3 cut(s)	333, 369, 401
MaeII	ACGT	1 cut(s)	301
MalI	GATC	2 cut(s)	280, 309
MboI	GATC	2 cut(s)	278, 307
MboII	GAAGA	6 cut(s)	42, 119, 191, 196, 273, 522
MflI	RGATCY	2 cut(s)	278, 307
MluCI	AATT	4 cut(s)	226, 438, 609, 649
MlyI	GAGTC	2 cut(s)	19, 478
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	113, 150, 174, 337, 344, 534, 603
MseI	TTAA	5 cut(s)	176, 482, 524, 648, 652
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	2 cut(s)	278, 307
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	243
PacI	TTAATTAA	1 cut(s)	652
PaqCI	CACCTGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	22, 147
PleI	GAGTC	2 cut(s)	18, 477
PpsI	GAGTC	2 cut(s)	18, 477
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	278, 307
RsaI	GTAC	3 cut(s)	263, 582, 633
RsaNI	GTAC	3 cut(s)	262, 581, 632
SaqAI	TTAA	5 cut(s)	176, 482, 524, 648, 652
SatI	GCNGC	2 cut(s)	21, 146
Sau3AI	GATC	2 cut(s)	278, 307
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	19, 478
SfaNI	GCATC	2 cut(s)	245, 355
SfcI	CTRYAG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	4 cut(s)	226, 438, 609, 649
SsiI	CCGC	1 cut(s)	499
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	3 cut(s)	333, 369, 401
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	190, 274, 408
TaiI	ACGT	1 cut(s)	304
TasI	AATT	4 cut(s)	226, 438, 609, 649
TatI	WGTACW	3 cut(s)	261, 580, 631
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	5 cut(s)	176, 482, 524, 648, 652
Tru9I	TTAA	5 cut(s)	176, 482, 524, 648, 652
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	2 cut(s)	20, 145
TspDTI	ATGAA	4 cut(s)	66, 191, 273, 543
TspGWI	ACGGA	2 cut(s)	363, 380
TspRI	CASTG	1 cut(s)	450
XspI	CTAG	3 cut(s)	333, 369, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.