Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012983

Physical Location & Seq

Genomic Coordinates Reverse (-)

12225997 .. 12228489

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1136600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCCCTGAATATAACTGCTGCTGCTTCATTTTCGTCGTCTTTTAGTCCTCCTCCTCCTCCTCCATTTCTAAACCCAAAGCACAAACATCATCTCAAGTTGTATCCTTTCAGAACGCATGCAGCTCAGTCGTCAGACGGAACTGAGAGTTGGATTAAAGAGGAAGACCCTCCTGCTTCTTTCTCCGGATCATCGTCATCTGCTCGCATGCAGCTGGATCTTTTGGAGCAACTTACCTCTACTAGCTCATCAGTTGACGGTGGTTATGTTAGCGATGGTAACTCTCGGAAACTTACAATCCGTCAGCAGCTAGCGCAGTTGGTTGGGGACAGAGACGGCGATTTCATCATTCCACTTGGTAAAAACTTTAAAATGGCGAGTGCCAAGGTTTTAACCGTCTCTCAGAAGCGAAATATCAAACGACAGGCTTACTTAAATGAAGTATCGAAGAGGAATGATTCAGTTTTCTTTGCCACCATTGGAGCATTTGTACTTGTTCCACCTCTTGTAATATTAGGAATAGCCATATCAACAGGTTATGTACAGCTTTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.11

Weight (kDa)

9.56

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42975
fragaria_vesca	FvH4_6g38570
malus_domestica	MD09G1149700.v1.1 MD17G1136600.v1.1
prunus_persica	Prupe.3G176400_v2.0.a1
pyrus_communis	pycom09g06910 pycom17g13010
rosa_chinensis	RchiOBHm_Chr2g0151981
rosa_laevigata	RLG00000020596
rosa_multiflora	Rmu_sc0017048.1_g000004
rosa_roxburghii	Rroxscaffold_2G00096080
rosa_rugosa	Rorug02G0430000
rosa_samantha	Rh2AG490700 Rh2BG503000 Rh2CG477100 Rh2DG514200
rosa_wichuraiana	Rw0G020210 Rw2G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	185
AclWI	GGATC	2 cut(s)	196, 225
AfaI	GTAC	2 cut(s)	492, 543
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	5 cut(s)	125, 214, 246, 310, 547
AluI	AGCT	5 cut(s)	125, 214, 246, 310, 547
Alw26I	GTCTC	2 cut(s)	327, 403
AlwI	GGATC	2 cut(s)	196, 225
Aor13HI	TCCGGA	1 cut(s)	185
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	20, 23, 122, 211, 307
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	4
AsuNHI	GCTAGC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	7, 10, 134, 223, 319
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciVI	GTATCC	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	327, 403
BfaI	CTAG	2 cut(s)	243, 311
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	21, 24, 123, 212, 308
BlsI	GCNGC	5 cut(s)	22, 25, 124, 213, 309
BmgT120I	GGNCC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
BseAI	TCCGGA	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	135, 140, 416
BseRI	GAGGAG	4 cut(s)	42, 45, 48, 51
BseXI	GCAGC	5 cut(s)	7, 10, 134, 223, 319
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	341
BsmAI	GTCTC	2 cut(s)	327, 403
BsmBI	CGTCTC	2 cut(s)	327, 403
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	188, 217
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	136, 139, 415
BspEI	TCCGGA	1 cut(s)	185
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	196, 225
BsrGI	TGTACA	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	188, 217
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	260, 397
Bst6I	CTCTTC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	4 cut(s)	120, 205, 209, 312
BstDEI	CTNAG	3 cut(s)	126, 144, 402
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	191, 220
BstMAI	GTCTC	2 cut(s)	327, 403
BstMBI	GATC	2 cut(s)	188, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNSI	RCATGY	2 cut(s)	122, 211
BstV1I	GCAGC	5 cut(s)	7, 10, 134, 223, 319
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	288
Cac8I	GCNNGC	4 cut(s)	120, 205, 209, 312
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	491, 542
CviAII	CATG	3 cut(s)	119, 208, 555
CviJI	RGCY	8 cut(s)	5, 125, 214, 246, 310, 428, 524, 547
CviKI_1	RGCY	8 cut(s)	5, 125, 214, 246, 310, 428, 524, 547
CviQI	GTAC	2 cut(s)	491, 542
DdeI	CTNAG	3 cut(s)	126, 144, 402
DpnI	GATC	2 cut(s)	190, 219
DpnII	GATC	2 cut(s)	188, 217
DraI	TTTAAA	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	327, 403
FaeI	CATG	3 cut(s)	122, 211, 558
FaiI	YATR	7 cut(s)	14, 120, 209, 267, 527, 540, 556
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	118, 207, 554
Fnu4HI	GCNGC	5 cut(s)	21, 24, 123, 212, 308
Fsp4HI	GCNGC	5 cut(s)	21, 24, 123, 212, 308
FspBI	CTAG	2 cut(s)	243, 311
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	21, 24, 123, 212, 308
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	122, 211, 558
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	113, 136, 288, 405
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	260, 397
HpyCH4V	TGCA	2 cut(s)	122, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	126, 144, 402
Hsp92II	CATG	3 cut(s)	122, 211, 558
HspAI	GCGC	1 cut(s)	314
Kpn2I	TCCGGA	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	188, 217
LmnI	GCTCC	2 cut(s)	226, 482
LpnPI	CCDG	6 cut(s)	20, 186, 199, 200, 410, 519
Lsp1109I	GCAGC	5 cut(s)	7, 10, 134, 223, 319
MaeI	CTAG	2 cut(s)	243, 311
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	190, 219
MboI	GATC	2 cut(s)	188, 217
MboII	GAAGA	2 cut(s)	176, 460
MflI	RGATCY	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	185
MseI	TTAA	4 cut(s)	156, 369, 392, 434
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	188, 217
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	122, 211, 558
NspI	RCATGY	2 cut(s)	122, 211
PaeI	GCATGC	2 cut(s)	122, 211
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	22, 25, 124, 213, 309
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	492, 543
RsaNI	GTAC	2 cut(s)	491, 542
SaqAI	TTAA	4 cut(s)	156, 369, 392, 434
SatI	GCNGC	5 cut(s)	21, 24, 123, 212, 308
Sau3AI	GATC	2 cut(s)	188, 217
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	9 cut(s)	127, 216, 239, 248, 312, 390, 505, 538, 549
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	2 cut(s)	122, 211
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	243, 311
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	260, 397
TaqI	TCGA	1 cut(s)	446
TatI	WGTACW	2 cut(s)	490, 541
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	156, 369, 392, 434
Tru9I	TTAA	4 cut(s)	156, 369, 392, 434
TseI	GCWGC	5 cut(s)	20, 23, 122, 211, 307
TspDTI	ATGAA	3 cut(s)	18, 334, 453
TspGWI	ACGGA	2 cut(s)	153, 290
XceI	RCATGY	2 cut(s)	122, 211
XspI	CTAG	2 cut(s)	243, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.