AT2G43240

transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008649
Physical Location & Seq
Reverse (-)
17970859 .. 17975938
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43240.2

Sequence Viewer

Length: 1221 bp
ATGAAGAACGGGATGGCTGAGTGCAGCGTATGTCGTTCAAGGTTGGTTTCTCCCAGTAGCAAAGCTATTTCAAGGGCTTATGACAACTACAACTACAAGATTAGAGTATCCTCAAAACAACGAGCTCTCAATGTCTTTTTGGTAGTCGGTGACTGCATGCTAGTTGGTCTACAGCCCGTCTTAGTGTACATGTCTAAAGTGGATGGAAAGTTCAACTTTAGTCCTATTAGCGTCAACTTCTTGACAGAAATCGCGAAAGTTATTTTCGCGATGGTCATGCTATTATTCCAGGCCAGGCACCAAAAAGTTGGAGAGAAACCTCTACTATCTCTTTCCACGTTTGTCCAGGCAGCTCGGAACAATATGCTTCTCGCTGTTCCAGCAGGGTTGTATGCCATTAATAACTATCTTAAGTTCACAATGCAGCTATATTTCAATCCTGCTACTGTGAAGATGCTCAGCAATCTAAAAGTTCTGGTGATTGCTGTACTACTGAAGATGATAATGAAGCGTCGGTTTTCCATCATACAGTGGGAAGCACTTGCTTTGTTGCTGATAGGGATTAGTATAAATCAGCTGCGTTCTCTTCCTGAAGGAGCTACAACTGTGGCTGTTCCAATTGCTACGGGTGCATACATATGTACCTTTATCTTTGTTACTGTCCCATCTTTGGCATCTGTCTACAACGAGTATGCTCTAAAGAGTCAGTATGACACAAGCATTTATCTCCAGAACTTATTTCTTTATGGTTATGGTGCGATATTCAACTTCCTCGGAATACTAGGAACTGTTATATATAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACATTCTAGGGCTACTATGTTTCTGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTTTTCTTCAAATATGCAGATACAATCTTGAAGAAATATTCGTCCACAGTAGCCACAATATTTACTGGCATAGCATCTGCAGCACTCTTTGGACATATATTAACAATGAATTTTCTTCTGGGAATTTCTATAGTTTTCATTTCAATGCATCAGTTCTTTTCACCCCTTTCAAAAGCAAAAGACGAACAACAAAACGGAAACATAGAGTTAGTTGACGCAAAGGATGGCCATAGGGCTAAAGACTCATTCATCAACATGGCAGCAGGAGCAACTGAAGAGGCTAGTCACCGCATTGAATCAGATGACAGAGTGCCACTTCTTCCCAGATAA

Protein Analysis

406

Amino Acids

44.96

Weight (kDa)

9.57

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 88 - 327 8e-29 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 169, 681
AccII CGCG 2 cut(s) 254, 269
AciI CCGC 1 cut(s) 1180
AcoI YGGCCR 1 cut(s) 1117
AcsI RAATTY 2 cut(s) 1000, 1014
AcuI CTGAAG 3 cut(s) 515, 612, 1185
AfaI GTAC 3 cut(s) 188, 489, 643
AfiI CCNNNNNNNGG 1 cut(s) 670
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 189
AjnI CCWGG 4 cut(s) 288, 293, 345, 805
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 6 cut(s) 65, 125, 353, 427, 577, 599
AluI AGCT 6 cut(s) 65, 125, 353, 427, 577, 599
Alw21I GWGCWC 1 cut(s) 127
AoxI GGCC 2 cut(s) 291, 1117
ApeKI GCWGC 7 cut(s) 24, 350, 424, 577, 869, 971, 1151
ApoI RAATTY 2 cut(s) 1000, 1014
AseI ATTAAT 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 803
AsuHPI GGTGA 4 cut(s) 161, 490, 1044, 1169
AvaII GGWCC 1 cut(s) 803
BaeI ACNNNNGTAYC 2 cut(s) 625, 658
BalI TGGCCA 1 cut(s) 1119
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 7 cut(s) 36, 362, 436, 564, 881, 983, 1163
BccI CCATC 6 cut(s) 7, 197, 265, 530, 673, 1109
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 4 cut(s) 290, 295, 347, 807
BciVI GTATCC 1 cut(s) 118
BfaI CTAG 4 cut(s) 161, 782, 837, 1173
BfmI CTRYAG 3 cut(s) 170, 969, 1020
BfrI CTTAAG 1 cut(s) 410
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 7 cut(s) 25, 351, 425, 578, 870, 972, 1152
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 7 cut(s) 26, 352, 426, 579, 871, 973, 1153
Bme1390I CCNGG 4 cut(s) 290, 295, 347, 807
Bme18I GGWCC 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 4 cut(s) 290, 295, 347, 807
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 4 cut(s) 444, 683, 974, 1048
BmuI ACTGGG 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 713
Bpu1102I GCTNAGC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 772
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 2 cut(s) 54, 961
BseBI CCWGG 4 cut(s) 290, 295, 347, 807
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 4 cut(s) 18, 208, 819, 1120
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMII CTCAG 2 cut(s) 9, 472
BseNI ACTGG 2 cut(s) 54, 961
BseXI GCAGC 7 cut(s) 36, 362, 436, 564, 881, 983, 1163
BsgI GTGCAG 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 254, 269
BshFI GGCC 2 cut(s) 293, 1119
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 127
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 670
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 2 cut(s) 293, 1119
Bsp1286I GDGCHC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 186
Bsp1720I GCTNAGC 1 cut(s) 458
Bsp68I TCGCGA 2 cut(s) 254, 269
BspACI CCGC 1 cut(s) 1180
BspANI GGCC 2 cut(s) 293, 1119
BspCNI CTCAG 2 cut(s) 10, 471
BspFNI CGCG 2 cut(s) 254, 269
BspLI GGNNCC 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 973
BspT107I GGYRCC 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 2 cut(s) 54, 961
BssECI CCNNGG 1 cut(s) 772
Bst2UI CCWGG 4 cut(s) 290, 295, 347, 807
Bst4CI ACNGT 6 cut(s) 448, 531, 607, 661, 790, 940
Bst6I CTCTTC 2 cut(s) 591, 1161
BstAFI CTTAAG 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 18, 181, 458
BstF5I GGATG 4 cut(s) 18, 208, 819, 1120
BstFNI CGCG 2 cut(s) 254, 269
BstMWI GCNNNNNNNGC 4 cut(s) 380, 629, 971, 1157
BstNI CCWGG 4 cut(s) 290, 295, 347, 807
BstNSI RCATGY 2 cut(s) 160, 193
BstSCI CCNGG 4 cut(s) 288, 293, 345, 805
BstSFI CTRYAG 3 cut(s) 170, 969, 1020
BstUI CGCG 2 cut(s) 254, 269
BstV1I GCAGC 7 cut(s) 36, 362, 436, 564, 881, 983, 1163
BstXI CCANNNNNNTGG 1 cut(s) 308
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 2 cut(s) 293, 1119
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 4 cut(s) 18, 208, 819, 1120
BtsIMutI CAGTG 1 cut(s) 536
BtuMI TCGCGA 2 cut(s) 254, 269
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 803
CseI GACGC 3 cut(s) 220, 500, 1115
Csp6I GTAC 3 cut(s) 187, 488, 642
CviAII CATG 4 cut(s) 157, 190, 277, 1147
CviQI GTAC 3 cut(s) 187, 488, 642
DdeI CTNAG 3 cut(s) 18, 181, 458
EaeI YGGCCR 1 cut(s) 1117
Eam1104I CTCTTC 2 cut(s) 591, 1161
EarI CTCTTC 2 cut(s) 591, 1161
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 803
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 3 cut(s) 515, 612, 1185
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 803
EcoRII CCWGG 4 cut(s) 288, 293, 345, 805
EcoT22I ATGCAT 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 4 cut(s) 160, 193, 280, 1150
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 1 cut(s) 647
FatI CATG 4 cut(s) 156, 189, 276, 1146
FauNDI CATATG 1 cut(s) 638
FblI GTMKAC 2 cut(s) 169, 681
Fnu4HI GCNGC 7 cut(s) 25, 351, 425, 578, 870, 972, 1152
FokI GGATG 4 cut(s) 25, 215, 806, 1127
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 7 cut(s) 25, 351, 425, 578, 870, 972, 1152
FspBI CTAG 4 cut(s) 161, 782, 837, 1173
GluI GCNGC 7 cut(s) 25, 351, 425, 578, 870, 972, 1152
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 2 cut(s) 293, 1119
HgaI GACGC 3 cut(s) 220, 500, 1115
Hin1II CATG 4 cut(s) 160, 193, 280, 1150
HincII GTYRAC 2 cut(s) 235, 1105
HindII GTYRAC 2 cut(s) 235, 1105
HinfI GANTC 4 cut(s) 703, 880, 1133, 1187
HphI GGTGA 4 cut(s) 161, 490, 1044, 1169
Hpy166II GTNNAC 7 cut(s) 170, 187, 235, 417, 682, 936, 1105
Hpy188I TCNGA 4 cut(s) 357, 776, 855, 1192
Hpy188III TCNNGA 6 cut(s) 241, 253, 268, 590, 730, 919
Hpy8I GTNNAC 7 cut(s) 170, 187, 235, 417, 682, 936, 1105
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 6 cut(s) 448, 531, 607, 661, 790, 940
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 7 cut(s) 24, 156, 424, 632, 908, 971, 1039
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 629, 971, 1157
HpyF3I CTNAG 3 cut(s) 18, 181, 458
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 4 cut(s) 160, 193, 280, 1150
LmnI GCTCC 2 cut(s) 596, 1157
Lsp1109I GCAGC 7 cut(s) 36, 362, 436, 564, 881, 983, 1163
LweI GCATC 4 cut(s) 444, 683, 974, 1048
MaeI CTAG 4 cut(s) 161, 782, 837, 1173
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 3 cut(s) 149, 655, 1175
MboII GAAGA 9 cut(s) 16, 463, 508, 578, 889, 934, 998, 1178, 1202
MfeI CAATTG 1 cut(s) 618
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 1119
MluCI AATT 3 cut(s) 618, 1000, 1014
MluNI TGGCCA 1 cut(s) 1119
MlyI GAGTC 2 cut(s) 712, 1127
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 5 cut(s) 121, 330, 782, 898, 1162
Mox20I TGGCCA 1 cut(s) 1119
Mph1103I ATGCAT 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 1119
MseI TTAA 3 cut(s) 399, 411, 992
MslI CAYNNNNRTG 3 cut(s) 637, 1034, 1145
Msp20I TGGCCA 1 cut(s) 1119
MspA1I CMGCKG 1 cut(s) 577
MspCI CTTAAG 1 cut(s) 410
MspR9I CCNGG 4 cut(s) 290, 295, 347, 807
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 4 cut(s) 290, 295, 347, 807
MvnI CGCG 2 cut(s) 254, 269
MwoI GCNNNNNNNGC 4 cut(s) 380, 629, 971, 1157
NdeI CATATG 1 cut(s) 638
NlaIII CATG 4 cut(s) 160, 193, 280, 1150
NlaIV GGNNCC 1 cut(s) 299
NmuCI GTSAC 2 cut(s) 149, 1175
NruI TCGCGA 2 cut(s) 254, 269
NsiI ATGCAT 1 cut(s) 1041
NspI RCATGY 2 cut(s) 160, 193
PaeI GCATGC 1 cut(s) 160
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 2 cut(s) 880, 1187
PkrI GCNGC 7 cut(s) 26, 352, 426, 579, 871, 973, 1153
PleI GAGTC 2 cut(s) 711, 1127
PpsI GAGTC 2 cut(s) 711, 1127
PpuMI RGGWCCY 1 cut(s) 803
PscI ACATGT 1 cut(s) 189
PshBI ATTAAT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 803
Psp6I CCWGG 4 cut(s) 288, 293, 345, 805
PspGI CCWGG 4 cut(s) 288, 293, 345, 805
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 803
PspPPI RGGWCCY 1 cut(s) 803
PstI CTGCAG 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 577
RruI TCGCGA 2 cut(s) 254, 269
RsaI GTAC 3 cut(s) 188, 489, 643
RsaNI GTAC 3 cut(s) 187, 488, 642
RseI CAYNNNNRTG 3 cut(s) 637, 1034, 1145
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 3 cut(s) 399, 411, 992
SatI GCNGC 7 cut(s) 25, 351, 425, 578, 870, 972, 1152
Sau96I GGNCC 1 cut(s) 803
SchI GAGTC 2 cut(s) 712, 1127
ScrFI CCNGG 4 cut(s) 290, 295, 347, 807
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 4 cut(s) 444, 683, 974, 1048
SfcI CTRYAG 3 cut(s) 170, 969, 1020
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 3 cut(s) 637, 1034, 1145
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SphI GCATGC 1 cut(s) 160
Sse9I AATT 3 cut(s) 618, 1000, 1014
SsiI CCGC 1 cut(s) 1180
SspI AATATT 2 cut(s) 929, 951
SspMI CTAG 4 cut(s) 161, 782, 837, 1173
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 4 cut(s) 288, 293, 345, 805
TaaI ACNGT 6 cut(s) 448, 531, 607, 661, 790, 940
TaiI ACGT 1 cut(s) 341
TasI AATT 3 cut(s) 618, 1000, 1014
TatI WGTACW 2 cut(s) 186, 487
TfiI GAWTC 2 cut(s) 880, 1187
Tru1I TTAA 3 cut(s) 399, 411, 992
Tru9I TTAA 3 cut(s) 399, 411, 992
TscAI CASTG 1 cut(s) 536
TseFI GTSAC 2 cut(s) 149, 1175
TseI GCWGC 7 cut(s) 24, 350, 424, 577, 869, 971, 1151
Tsp45I GTSAC 2 cut(s) 149, 1175
TspDTI ATGAA 5 cut(s) 17, 521, 1013, 1018, 1129
TspGWI ACGGA 1 cut(s) 1101
TspRI CASTG 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 803
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 2 cut(s) 1000, 1014
XceI RCATGY 2 cut(s) 160, 193
XmiI GTMKAC 2 cut(s) 169, 681
XspI CTAG 4 cut(s) 161, 782, 837, 1173
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.