Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Forward (+)

36934382 .. 36944867

Gene Structure 10486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1273000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAAGAACGGGATGATAGAATGTAGTGTATGCCATTCAAAGATTGTTGCCCCGAACTCTAAAACTTTCTCCAGGGCCTATGACCGCCACAAGAACAGGTTATCATCCAAGCAACGTGTTCTCAATGTACTCTTGGTCGTTGGTGATTGTATGCTTGTCGGTTTACAGCCTATCCTGGTTTATATGTCCAAGGTCGATGGAAAATTCGAGTTTAGCCCGATTAGTGTAAACTTTTTAACAGAGGCAGCAAAGGTTCTATTTGCTGTCGTTATGCTATTGTTGCAGGCTAGGAATCAGAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTCATGCAGGCAGCTCGCAATAATGTGCTTCTTGCTGTTCCAGCATTTCTCTATGCTATTAATAACTATTTAAAGTTCACCATGCAGCTATATTTTAATCCTGCAACTGTGAAGATGCTGAGCAATTTGAAGGTGTTGGTGATTGCTGTTTTGTTGAAAATGATAATGAAGCGCCGATTTTCAATAATTCAGTGGGAAGCCCTTGCTTTGTTGCTCATTGGAATTAGTGTAAATCAGTTGCGATCCTTACCCGAGGGTTCCACTGCTTTAGGTCTTCCAGTTTCGACGGGCGCATACATCTACACATTGATCTTTGTAACAGTTCCATCATTGGCCTCTGTTTATAATGAGTATGCTCTGAAGAGCCAATATGACACAAGCATATACCTCCAGAACTTATTCTTATACGGGTATGGTGCTATATTCAACTTTCTAGGAATATTGGTAATGGCCATTGTCAAAGGTCCAAGTAGCTTTGATATCCTTCATGGTCATTCAAGAGCTACAATGTTTCTGATAGCTAACAATGCAGCACAAGGAATTCTGTCTTCTTTTTTCTTCAAATATGCAGATACAATTCTAAAGAAGTACTCGTCCACTGTGGCCACTATCTTCACAGGCATAGCATCTGCTTTGCTGTTTGGTCATAAATTGACTATGAACTTTGTTTTAGGAATTTCTATAGTCTTCATCTCGATGCACCAGTTCTTTTCTCCCATTTCGAAAGTCAAGGAGGAGGAACAAAATGGGAAGCTAGAAATGATAGATGTCGATGATAAACACAGGTCAAAGGATTCCTTTGTTAATATGACAGCAGGGGCAAATGAAGAGGCTAGTCATCGGGTGGGCCCTGATGAGAGACAGCCGCTTCTTCCGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

405

Amino Acids

44.93

Weight (kDa)

9.54

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	59 - 344	7.9e-33	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AciI	CCGC	2 cut(s)	85, 1199
AclWI	GGATC	1 cut(s)	570
AcoI	YGGCCR	2 cut(s)	783, 936
AcsI	RAATTY	3 cut(s)	203, 873, 1008
AcuI	CTGAAG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	129, 923
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	7 cut(s)	39, 463, 490, 516, 760, 831, 895
AjnI	CCWGG	2 cut(s)	71, 174
AluBI	AGCT	6 cut(s)	347, 421, 807, 836, 854, 1087
AluI	AGCT	6 cut(s)	347, 421, 807, 836, 854, 1087
Alw26I	GTCTC	1 cut(s)	1186
AlwI	GGATC	1 cut(s)	570
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	5 cut(s)	75, 666, 783, 936, 1180
ApaI	GGGCCC	1 cut(s)	1184
ApeKI	GCWGC	4 cut(s)	245, 344, 418, 863
ApoI	RAATTY	3 cut(s)	203, 873, 1008
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	2 cut(s)	507, 626
AspS9I	GGNCC	4 cut(s)	75, 797, 1180, 1181
AsuHPI	GGTGA	3 cut(s)	155, 403, 484
AsuII	TTCGAA	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	797
BaeGI	GKGCMC	1 cut(s)	1184
BalI	TGGCCA	2 cut(s)	785, 938
BanII	GRGCYC	1 cut(s)	1184
BbsI	GAAGAC	3 cut(s)	599, 873, 1012
BbvI	GCAGC	4 cut(s)	257, 356, 430, 875
BccI	CCATC	2 cut(s)	191, 667
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	2 cut(s)	73, 176
BcoDI	GTCTC	1 cut(s)	1186
BfaI	CTAG	4 cut(s)	288, 767, 1088, 1167
BfmI	CTRYAG	1 cut(s)	1014
BfoI	RGCGCY	1 cut(s)	508
BisI	GCNGC	5 cut(s)	246, 345, 419, 864, 1199
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	5 cut(s)	247, 346, 420, 865, 1200
BmcAI	AGTACT	1 cut(s)	923
Bme1390I	CCNGG	2 cut(s)	73, 176
Bme18I	GGWCC	1 cut(s)	797
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	4 cut(s)	75, 797, 1180, 1181
BmiI	GGNNCC	2 cut(s)	592, 1182
BmrFI	CCNGG	2 cut(s)	73, 176
BmsI	GCATC	3 cut(s)	438, 968, 1020
BpiI	GAAGAC	3 cut(s)	599, 873, 1012
BpmI	CTGGAG	2 cut(s)	55, 707
Bpu1102I	GCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	1055
BsaJI	CCNNGG	3 cut(s)	72, 189, 585
Bse1I	ACTGG	2 cut(s)	611, 1036
BseBI	CCWGG	2 cut(s)	73, 176
BseDI	CCNNGG	3 cut(s)	72, 189, 585
BseGI	GGATG	2 cut(s)	18, 104
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	611, 1036
BseRI	GAGGAG	1 cut(s)	1082
BseSI	GKGCMC	1 cut(s)	1184
BseXI	GCAGC	4 cut(s)	257, 356, 430, 875
BshFI	GGCC	5 cut(s)	77, 668, 785, 938, 1182
BsiHKCI	CYCGRG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	1186
BsnI	GGCC	5 cut(s)	77, 668, 785, 938, 1182
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp120I	GGGCCC	1 cut(s)	1180
Bsp1286I	GDGCHC	1 cut(s)	1184
Bsp143I	GATC	2 cut(s)	575, 642
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	2 cut(s)	85, 1199
BspANI	GGCC	5 cut(s)	77, 668, 785, 938, 1182
BspCNI	CTCAG	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	592, 1182
BspPI	GGATC	1 cut(s)	570
BspQI	GCTCTTC	1 cut(s)	689
BspT104I	TTCGAA	1 cut(s)	1055
BsrI	ACTGG	2 cut(s)	611, 1036
BssECI	CCNNGG	3 cut(s)	72, 189, 585
BssMI	GATC	2 cut(s)	575, 642
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	73, 176
Bst4CI	ACNGT	3 cut(s)	442, 655, 934
Bst6I	CTCTTC	3 cut(s)	321, 689, 1155
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	3 cut(s)	285, 342, 349
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	18, 104
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	2 cut(s)	507, 626
BstKTI	GATC	2 cut(s)	578, 645
BstMAI	GTCTC	1 cut(s)	1186
BstMBI	GATC	2 cut(s)	575, 642
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 374, 860
BstNI	CCWGG	2 cut(s)	73, 176
BstSCI	CCNGG	2 cut(s)	71, 174
BstSFI	CTRYAG	1 cut(s)	1014
BstSLI	GKGCMC	1 cut(s)	1184
BstV1I	GCAGC	4 cut(s)	257, 356, 430, 875
BstV2I	GAAGAC	3 cut(s)	599, 873, 1012
BsuRI	GGCC	5 cut(s)	77, 668, 785, 938, 1182
BtsCI	GGATG	2 cut(s)	18, 104
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	530, 594, 930
Cac8I	GCNNGC	3 cut(s)	285, 342, 349
CfoI	GCGC	2 cut(s)	507, 626
Cfr13I	GGNCC	4 cut(s)	75, 797, 1180, 1181
Csp6I	GTAC	2 cut(s)	128, 922
CviAII	CATG	3 cut(s)	337, 415, 821
CviQI	GTAC	2 cut(s)	128, 922
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	2 cut(s)	577, 644
DpnII	GATC	2 cut(s)	575, 642
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	783, 936
Eam1104I	CTCTTC	3 cut(s)	321, 689, 1155
EarI	CTCTTC	3 cut(s)	321, 689, 1155
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	1184
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	584
EcoO109I	RGGNCCY	2 cut(s)	75, 1181
EcoRI	GAATTC	1 cut(s)	873
EcoRII	CCWGG	2 cut(s)	71, 174
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	1184
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	340, 418, 824
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FatI	CATG	3 cut(s)	336, 414, 820
Fnu4HI	GCNGC	5 cut(s)	246, 345, 419, 864, 1199
FokI	GGATG	2 cut(s)	25, 91
FriOI	GRGCYC	1 cut(s)	1184
Fsp4HI	GCNGC	5 cut(s)	246, 345, 419, 864, 1199
FspBI	CTAG	4 cut(s)	288, 767, 1088, 1167
GlaI	GCGC	2 cut(s)	506, 625
GluI	GCNGC	5 cut(s)	246, 345, 419, 864, 1199
GsuI	CTGGAG	2 cut(s)	55, 707
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	5 cut(s)	77, 668, 785, 938, 1182
HhaI	GCGC	2 cut(s)	507, 626
Hin1II	CATG	3 cut(s)	340, 418, 824
Hin6I	GCGC	2 cut(s)	505, 624
HinP1I	GCGC	2 cut(s)	505, 624
HinfI	GANTC	2 cut(s)	292, 1127
HphI	GGTGA	3 cut(s)	155, 403, 484
Hpy166II	GTNNAC	4 cut(s)	164, 229, 411, 930
Hpy188I	TCNGA	4 cut(s)	297, 693, 849, 1209
Hpy188III	TCNNGA	3 cut(s)	724, 831, 1027
Hpy8I	GTNNAC	4 cut(s)	164, 229, 411, 930
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	457, 827
HpyCH4III	ACNGT	3 cut(s)	442, 655, 934
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	7 cut(s)	283, 340, 418, 437, 863, 902, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 374, 860
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	340, 418, 824
HspAI	GCGC	2 cut(s)	505, 624
Kzo9I	GATC	2 cut(s)	575, 642
LguI	GCTCTTC	1 cut(s)	689
Lsp1109I	GCAGC	4 cut(s)	257, 356, 430, 875
LweI	GCATC	3 cut(s)	438, 968, 1020
MaeI	CTAG	4 cut(s)	288, 767, 1088, 1167
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	2 cut(s)	577, 644
MboI	GATC	2 cut(s)	575, 642
MhlI	GDGCHC	1 cut(s)	1184
MlsI	TGGCCA	2 cut(s)	785, 938
MluCI	AATT	9 cut(s)	203, 324, 457, 519, 555, 873, 909, 983, 1008
MluNI	TGGCCA	2 cut(s)	785, 938
MnlI	CCTC	8 cut(s)	235, 324, 580, 679, 731, 1060, 1063, 1156
Mox20I	TGGCCA	2 cut(s)	785, 938
MroXI	GAANNNNTTC	1 cut(s)	731
MscI	TGGCCA	2 cut(s)	785, 938
MseI	TTAA	5 cut(s)	236, 393, 404, 429, 1137
MslI	CAYNNNNRTG	1 cut(s)	1028
Msp20I	TGGCCA	2 cut(s)	785, 938
MspR9I	CCNGG	2 cut(s)	73, 176
MvaI	CCWGG	2 cut(s)	73, 176
MwoI	GCNNNNNNNGC	3 cut(s)	280, 374, 860
NdeII	GATC	2 cut(s)	575, 642
NlaIII	CATG	3 cut(s)	340, 418, 824
NlaIV	GGNNCC	2 cut(s)	592, 1182
NspV	TTCGAA	1 cut(s)	1055
PciSI	GCTCTTC	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	292, 1127
PkrI	GCNGC	5 cut(s)	247, 346, 420, 865, 1200
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	71, 174
PspGI	CCWGG	2 cut(s)	71, 174
PspN4I	GGNNCC	2 cut(s)	592, 1182
PspOMI	GGGCCC	1 cut(s)	1180
PspPI	GGNCC	4 cut(s)	75, 797, 1180, 1181
RsaI	GTAC	2 cut(s)	129, 923
RsaNI	GTAC	2 cut(s)	128, 922
RseI	CAYNNNNRTG	1 cut(s)	1028
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	236, 393, 404, 429, 1137
SatI	GCNGC	5 cut(s)	246, 345, 419, 864, 1199
Sau3AI	GATC	2 cut(s)	575, 642
Sau96I	GGNCC	4 cut(s)	75, 797, 1180, 1181
ScaI	AGTACT	1 cut(s)	923
ScrFI	CCNGG	2 cut(s)	73, 176
SduI	GDGCHC	1 cut(s)	1184
SfaNI	GCATC	3 cut(s)	438, 968, 1020
SfcI	CTRYAG	1 cut(s)	1014
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	1028
Sse9I	AATT	9 cut(s)	203, 324, 457, 519, 555, 873, 909, 983, 1008
SsiI	CCGC	2 cut(s)	85, 1199
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	4 cut(s)	288, 767, 1088, 1167
StyD4I	CCNGG	2 cut(s)	71, 174
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	442, 655, 934
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	6 cut(s)	195, 207, 617, 1028, 1055, 1104
TasI	AATT	9 cut(s)	203, 324, 457, 519, 555, 873, 909, 983, 1008
TatI	WGTACW	2 cut(s)	127, 921
TauI	GCSGC	1 cut(s)	1201
TfiI	GAWTC	2 cut(s)	292, 1127
Tru1I	TTAA	5 cut(s)	236, 393, 404, 429, 1137
Tru9I	TTAA	5 cut(s)	236, 393, 404, 429, 1137
TscAI	CASTG	3 cut(s)	530, 601, 937
TseI	GCWGC	4 cut(s)	245, 344, 418, 863
TspDTI	ATGAA	7 cut(s)	17, 325, 515, 809, 1007, 1012, 1173
TspRI	CASTG	3 cut(s)	530, 601, 937
VpaK11BI	GGWCC	1 cut(s)	797
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	3 cut(s)	203, 873, 1008
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	4 cut(s)	288, 767, 1088, 1167
ZrmI	AGTACT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.