Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Reverse (-)

27921612 .. 27931212

Gene Structure 9601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAACAACGGGATGATAGAATGCAGTGTATGCCATTCAAAGTTGGTTCCCTCGAATAGTAAAGCTTTCTCTAAGGCTTATGACCGGCACAAGAGTAGGCTATCGTCCAAGCAGCGTGCTCTCAATGTCCTCTTGGTCGTTGGTGATTGTATGCTAGTTGGTTTGCAGCCAATTCTGGTTTATATGTCCAAGGTGGATGGAAAATTTGATTTTAGCCCGATCAGTGTCAACTTTTTGACGGAGGCTGCAAAGGTTCTATTTGCTGTTGTCATGCTCTTGTTGCAGGCTAAGAATCAGAAAGTCGGGGAGAAGCCTCTTCTCTCGATTTCTACATTCACACAGGCAGCTCGGAACAATGTGCTTCTTGCTGTTCCAGCATTTCTATATGCTATTAATAACTATTTAAAGTTCACCATGCAGCTGTATTTTAATCCTGCTACAGTGAAGATGTTGAGCAATCTGAAGGTGTTGGTTATTGCTGTTCTCCTGAAAATGATAATGAAACGCCGATTTTCCATAATTCAGTGGGAGGCCCTTGCTTTGTTGCTCATCGGGATTAGTGTAAATCAGTTGCGATCTTTACCTGCAGGTTCCACTGCTTTAGATCTAACAATTTCGACCGGCGCATACATATACACGCTGATCTTTGTAACAGTTCCATCCCTGGCTTCTGTCTACAATGAGTATGCTTTGAAGAGCCAATATGACACAAGCATATACCTTCAGAACTTATTTTTATATGGGTATGGTGCTATATTCAACTTTCTAGGAATAGTGGTAATGGCCATTGTCAAAGGTCCAAGTAGCTTTGATATTCTTCATGGTCATTCAAAAGCTACAATGTTTCTGATAGCAAACAATGCAGCGCAAGGAATACTGTCTTCTTTTTTCTTCAAATATGCAGATACAATTCTAAAGAAGTACTCATCCACTGTAGCCACTATCTTCACAGGCATAGCATCTGCTGTGCTATTTGGTCATACTTTGACTATGAATTTTGTTTTAGGCATTTCTATTGTCTTCATCTCCATGCACCAGTTCTTTTCTCCTATTTCAAAAGCCAAAGATGAAGAACAAAATGGGAAGCTAGAATTGGTAGATGTCCATGATGGTCACAGGTACATGCTAGTTCTTTTTGCTCATTTCTGTTGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

385

Amino Acids

42.67

Weight (kDa)

9.47

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	59 - 344	2.5e-32	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	578, 592
AccI	GTMKAC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	203, 994
AcuI	CTGAAG	2 cut(s)	482, 707
AfaI	GTAC	2 cut(s)	923, 1121
AgsI	TTSAA	6 cut(s)	39, 694, 760, 831, 895, 1056
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	2 cut(s)	1076, 1108
AluBI	AGCT	6 cut(s)	65, 347, 421, 807, 836, 1087
AluI	AGCT	6 cut(s)	65, 347, 421, 807, 836, 1087
Alw21I	GWGCWC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	531, 783
ApeKI	GCWGC	6 cut(s)	112, 166, 245, 344, 418, 863
ApoI	RAATTY	2 cut(s)	203, 994
AseI	ATTAAT	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	626, 868
AspS9I	GGNCC	2 cut(s)	532, 797
AsuHPI	GGTGA	2 cut(s)	155, 403
AvaII	GGWCC	1 cut(s)	797
BalI	TGGCCA	1 cut(s)	785
BbsI	GAAGAC	2 cut(s)	873, 1012
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
BccI	CCATC	3 cut(s)	191, 667, 1103
BciT130I	CCWGG	1 cut(s)	665
BfaI	CTAG	4 cut(s)	155, 767, 1088, 1127
BfmI	CTRYAG	3 cut(s)	438, 585, 933
BfuAI	ACCTGC	2 cut(s)	578, 592
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
BlsI	GCNGC	6 cut(s)	114, 168, 247, 346, 420, 865
BmcAI	AGTACT	1 cut(s)	923
Bme1390I	CCNGG	1 cut(s)	665
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	2 cut(s)	532, 797
BmiI	GGNNCC	2 cut(s)	48, 592
BmrFI	CCNGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	968
BpiI	GAAGAC	2 cut(s)	873, 1012
BsaJI	CCNNGG	2 cut(s)	189, 663
Bse118I	RCCGGY	2 cut(s)	84, 620
Bse1I	ACTGG	1 cut(s)	1036
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	189, 663
BseGI	GGATG	4 cut(s)	18, 202, 659, 926
BseNI	ACTGG	1 cut(s)	1036
BseXI	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	533, 785
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	85, 621
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	533, 785
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	219, 575, 604, 642
BspANI	GGCC	2 cut(s)	533, 785
BspLI	GGNNCC	2 cut(s)	48, 592
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	2 cut(s)	578, 592
BspQI	GCTCTTC	1 cut(s)	689
BsrFI	RCCGGY	2 cut(s)	84, 620
BsrI	ACTGG	1 cut(s)	1036
BssAI	RCCGGY	2 cut(s)	84, 620
BssECI	CCNNGG	2 cut(s)	189, 663
BssMI	GATC	4 cut(s)	219, 575, 604, 642
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	4 cut(s)	442, 655, 879, 934
Bst6I	CTCTTC	2 cut(s)	321, 689
BstAPI	GCANNNNNTGC	2 cut(s)	30, 860
BstC8I	GCNNGC	2 cut(s)	117, 285
BstDEI	CTNAG	2 cut(s)	72, 288
BstF5I	GGATG	4 cut(s)	18, 202, 659, 926
BstHHI	GCGC	2 cut(s)	626, 868
BstKTI	GATC	4 cut(s)	222, 578, 607, 645
BstMBI	GATC	4 cut(s)	219, 575, 604, 642
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 280, 374, 860
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	1126
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	3 cut(s)	438, 585, 933
BstV1I	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
BstV2I	GAAGAC	2 cut(s)	873, 1012
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	533, 785
BtsCI	GGATG	4 cut(s)	18, 202, 659, 926
BtsI	GCAGTG	2 cut(s)	31, 594
BtsIMutI	CAGTG	6 cut(s)	31, 229, 447, 530, 594, 930
BveI	ACCTGC	2 cut(s)	578, 592
Cac8I	GCNNGC	2 cut(s)	117, 285
CfoI	GCGC	2 cut(s)	626, 868
Cfr10I	RCCGGY	2 cut(s)	84, 620
Cfr13I	GGNCC	2 cut(s)	532, 797
Csp6I	GTAC	2 cut(s)	922, 1120
CviAII	CATG	6 cut(s)	271, 415, 821, 1030, 1106, 1123
CviQI	GTAC	2 cut(s)	922, 1120
DdeI	CTNAG	2 cut(s)	72, 288
DpnI	GATC	4 cut(s)	221, 577, 606, 644
DpnII	GATC	4 cut(s)	219, 575, 604, 642
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	321, 689
EarI	CTCTTC	2 cut(s)	321, 689
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	2 cut(s)	482, 707
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	6 cut(s)	274, 418, 824, 1033, 1109, 1126
FatI	CATG	6 cut(s)	270, 414, 820, 1029, 1105, 1122
FauNDI	CATATG	1 cut(s)	1154
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
FokI	GGATG	4 cut(s)	25, 209, 646, 913
Fsp4HI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
FspBI	CTAG	4 cut(s)	155, 767, 1088, 1127
GlaI	GCGC	2 cut(s)	625, 867
GluI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
HaeIII	GGCC	2 cut(s)	533, 785
HapII	CCGG	2 cut(s)	85, 621
HhaI	GCGC	2 cut(s)	626, 868
Hin1II	CATG	6 cut(s)	274, 418, 824, 1033, 1109, 1126
Hin6I	GCGC	2 cut(s)	624, 866
HinP1I	GCGC	2 cut(s)	624, 866
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	85, 621
HphI	GGTGA	2 cut(s)	155, 403
Hpy166II	GTNNAC	3 cut(s)	229, 411, 676
Hpy188I	TCNGA	5 cut(s)	297, 351, 462, 726, 849
Hpy188III	TCNNGA	3 cut(s)	322, 487, 553
Hpy8I	GTNNAC	3 cut(s)	229, 411, 676
HpyAV	CCTTC	2 cut(s)	457, 731
HpyCH4III	ACNGT	4 cut(s)	442, 655, 879, 934
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 280, 374, 860
HpyF3I	CTNAG	2 cut(s)	72, 288
Hsp92II	CATG	6 cut(s)	274, 418, 824, 1033, 1109, 1126
HspAI	GCGC	2 cut(s)	624, 866
Kzo9I	GATC	4 cut(s)	219, 575, 604, 642
LguI	GCTCTTC	1 cut(s)	689
Lsp1109I	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
LweI	GCATC	1 cut(s)	968
MaeI	CTAG	4 cut(s)	155, 767, 1088, 1127
MaeIII	GTNAC	2 cut(s)	649, 1112
MalI	GATC	4 cut(s)	221, 577, 606, 644
MboI	GATC	4 cut(s)	219, 575, 604, 642
MboII	GAAGA	9 cut(s)	308, 457, 706, 809, 873, 883, 937, 1012, 1082
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	7 cut(s)	171, 203, 519, 612, 909, 994, 1091
MluNI	TGGCCA	1 cut(s)	785
MnlI	CCTC	5 cut(s)	61, 140, 235, 324, 523
Mox20I	TGGCCA	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	3 cut(s)	393, 404, 429
MslI	CAYNNNNRTG	1 cut(s)	1028
Msp20I	TGGCCA	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	85, 621
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	4 cut(s)	30, 280, 374, 860
NdeI	CATATG	1 cut(s)	1154
NdeII	GATC	4 cut(s)	219, 575, 604, 642
NlaIII	CATG	6 cut(s)	274, 418, 824, 1033, 1109, 1126
NlaIV	GGNNCC	2 cut(s)	48, 592
NmuCI	GTSAC	1 cut(s)	1112
NspI	RCATGY	1 cut(s)	1126
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	114, 168, 247, 346, 420, 865
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	48, 592
PspPI	GGNCC	2 cut(s)	532, 797
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	923, 1121
RsaNI	GTAC	2 cut(s)	922, 1120
RseI	CAYNNNNRTG	1 cut(s)	1028
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	393, 404, 429
SatI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
Sau3AI	GATC	4 cut(s)	219, 575, 604, 642
Sau96I	GGNCC	2 cut(s)	532, 797
SbfI	CCTGCAGG	1 cut(s)	589
ScaI	AGTACT	1 cut(s)	923
ScrFI	CCNGG	1 cut(s)	665
SdaI	CCTGCAGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	968
SfcI	CTRYAG	3 cut(s)	438, 585, 933
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	1028
Sse8387I	CCTGCAGG	1 cut(s)	589
Sse9I	AATT	7 cut(s)	171, 203, 519, 612, 909, 994, 1091
SspMI	CTAG	4 cut(s)	155, 767, 1088, 1127
StyD4I	CCNGG	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	4 cut(s)	442, 655, 879, 934
TaqI	TCGA	3 cut(s)	53, 323, 617
TasI	AATT	7 cut(s)	171, 203, 519, 612, 909, 994, 1091
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	3 cut(s)	393, 404, 429
Tru9I	TTAA	3 cut(s)	393, 404, 429
TscAI	CASTG	6 cut(s)	31, 229, 447, 530, 601, 937
TseFI	GTSAC	1 cut(s)	1112
TseI	GCWGC	6 cut(s)	112, 166, 245, 344, 418, 863
Tsp45I	GTSAC	1 cut(s)	1112
TspDTI	ATGAA	6 cut(s)	17, 515, 809, 1007, 1012, 1083
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	6 cut(s)	31, 229, 447, 530, 601, 937
VpaK11BI	GGWCC	1 cut(s)	797
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	2 cut(s)	203, 994
XceI	RCATGY	1 cut(s)	1126
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	4 cut(s)	155, 767, 1088, 1127
ZrmI	AGTACT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.