Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Reverse (-)

25699230 .. 25708802

Gene Structure 9573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAACAACGGGATGATAGAATGCAGTGTATGCCATTCAAAGTTGGTTCCCTCGAATAGTAAAGCTTTCTCTAAGGCTTATGACCGGCACAAGAGTAGGCTATCGTCCAAGCAGCGTGCTCTCAATGTCCTCTTGGTCGTTGGTGATTGTATGCTAGTTGGTTTGCAGCCAATTCTGGTTTATATGTCCAAGGTGGATGGAAAATTTGATTTTAGCCCGATTAGTGTCAACTTTTTGACGGAGGCTGCAAAGGTTCTATTTGCTGTTGTTATGCTCTTGTTGCAGGCTAAGAATCAGAAAGTCGGGGAGAAGCCTCTTCTCTCAATTTCTACATTCACACAGGCAGCTCGGAACAATGTGCTTCTTGCTGTTCCAGCATTTCTATATGCTATTAATAACTATTTAAAGTTCACCATGCAGCTGTATTTTAATCCTGCTACAGTGAAGATGTTGAGCAATCTGAAGGTGTTGGTTATTGCTGTTCTCCTGAAAATGATAATGAAACGCCGATTTTCCATAATTCAGTGGGAGGCCCTTGCTTTGTTGCTCATCGGGATTAGTGTAAATCAGTTGCGATCTTTACCTGCAGGTTCCACTGCTTTAGATCTAACAATTTCGACCGGCGCATACATATACACGCTGATCTTTGTAACAGTTCCATCCCTGGCTTCTGTCTACAATGAGTATGCTTTGAAGAGCCAATATGACACAAGCATATACCTTCAGAACTTATTTTTATATGGGTATGGTGCTATATTCAACTTTCTAGGAATAGTGGTAATGGCCATTGTCAAAGGTCCAAGTAGCTTTGATATCCTTCATGGTCATTCAAAAGCTACAATGTTTCTGATAGCAAACAATGCAGCGCAAGGAATACTGTCTTCTTTTTTCTTCAAATATGCAGATACAATTCTAAAGAAGTACTCATCCACTGTAGCCACTATCTTCACAGGCATAGCATCTGCTGTGCTATTTGGTCATACTTTGACTATGAATTTTGTTTTAGGAATTTCTATTGTCTTCATCTCCATGCACCAGGTAATTATAGCAGATTTTTGTTTTTGTTTTCTTATTTATGCGAAGATCAATTTTCAATTCATTAAGTATAAATTAGGAAAAACTTGCTTTCTATATATTTTCTCTGAACAGTTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

386

Amino Acids

42.93

Weight (kDa)

9.58

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	59 - 344	3.3e-32	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	578, 592
AccI	GTMKAC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	3 cut(s)	203, 994, 1008
AcuI	CTGAAG	2 cut(s)	482, 707
AfaI	GTAC	1 cut(s)	923
AgsI	TTSAA	6 cut(s)	39, 694, 760, 831, 895, 1094
AjnI	CCWGG	2 cut(s)	663, 1035
AjuI	GAANNNNNNNTTGG	1 cut(s)	1137
AluBI	AGCT	5 cut(s)	65, 347, 421, 807, 836
AluI	AGCT	5 cut(s)	65, 347, 421, 807, 836
Alw21I	GWGCWC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	531, 783
ApeKI	GCWGC	6 cut(s)	112, 166, 245, 344, 418, 863
ApoI	RAATTY	3 cut(s)	203, 994, 1008
AseI	ATTAAT	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	626, 868
AspS9I	GGNCC	2 cut(s)	532, 797
AsuHPI	GGTGA	2 cut(s)	155, 403
AvaII	GGWCC	1 cut(s)	797
BalI	TGGCCA	1 cut(s)	785
BbsI	GAAGAC	2 cut(s)	873, 1012
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
BccI	CCATC	2 cut(s)	191, 667
BciT130I	CCWGG	2 cut(s)	665, 1037
BfaI	CTAG	2 cut(s)	155, 767
BfmI	CTRYAG	3 cut(s)	438, 585, 933
BfuAI	ACCTGC	2 cut(s)	578, 592
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
BlsI	GCNGC	6 cut(s)	114, 168, 247, 346, 420, 865
BmcAI	AGTACT	1 cut(s)	923
Bme1390I	CCNGG	2 cut(s)	665, 1037
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	2 cut(s)	532, 797
BmiI	GGNNCC	2 cut(s)	48, 592
BmrFI	CCNGG	2 cut(s)	665, 1037
BmsI	GCATC	1 cut(s)	968
BpiI	GAAGAC	2 cut(s)	873, 1012
BsaJI	CCNNGG	2 cut(s)	189, 663
Bse118I	RCCGGY	2 cut(s)	84, 620
BseBI	CCWGG	2 cut(s)	665, 1037
BseDI	CCNNGG	2 cut(s)	189, 663
BseGI	GGATG	4 cut(s)	18, 202, 659, 926
BseXI	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	533, 785
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	85, 621
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	533, 785
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	575, 604, 642, 1083
BspANI	GGCC	2 cut(s)	533, 785
BspLI	GGNNCC	2 cut(s)	48, 592
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	2 cut(s)	578, 592
BspQI	GCTCTTC	1 cut(s)	689
BsrFI	RCCGGY	2 cut(s)	84, 620
BssAI	RCCGGY	2 cut(s)	84, 620
BssECI	CCNNGG	2 cut(s)	189, 663
BssMI	GATC	4 cut(s)	575, 604, 642, 1083
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	665, 1037
Bst4CI	ACNGT	5 cut(s)	442, 655, 879, 934, 1149
Bst6I	CTCTTC	2 cut(s)	321, 689
BstAPI	GCANNNNNTGC	2 cut(s)	30, 860
BstC8I	GCNNGC	2 cut(s)	117, 285
BstDEI	CTNAG	2 cut(s)	72, 288
BstF5I	GGATG	4 cut(s)	18, 202, 659, 926
BstHHI	GCGC	2 cut(s)	626, 868
BstKTI	GATC	4 cut(s)	578, 607, 645, 1086
BstMBI	GATC	4 cut(s)	575, 604, 642, 1083
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 280, 374, 860
BstNI	CCWGG	2 cut(s)	665, 1037
BstSCI	CCNGG	2 cut(s)	663, 1035
BstSFI	CTRYAG	3 cut(s)	438, 585, 933
BstV1I	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
BstV2I	GAAGAC	2 cut(s)	873, 1012
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	533, 785
BtsCI	GGATG	4 cut(s)	18, 202, 659, 926
BtsI	GCAGTG	2 cut(s)	31, 594
BtsIMutI	CAGTG	5 cut(s)	31, 447, 530, 594, 930
BveI	ACCTGC	2 cut(s)	578, 592
Cac8I	GCNNGC	2 cut(s)	117, 285
CfoI	GCGC	2 cut(s)	626, 868
Cfr10I	RCCGGY	2 cut(s)	84, 620
Cfr13I	GGNCC	2 cut(s)	532, 797
CsiI	ACCWGGT	1 cut(s)	1035
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	3 cut(s)	415, 821, 1030
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	2 cut(s)	72, 288
DpnI	GATC	4 cut(s)	577, 606, 644, 1085
DpnII	GATC	4 cut(s)	575, 604, 642, 1083
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	321, 689
EarI	CTCTTC	2 cut(s)	321, 689
Eco130I	CCWWGG	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	2 cut(s)	482, 707
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	663, 1035
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	418, 824, 1033
FatI	CATG	3 cut(s)	414, 820, 1029
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
FokI	GGATG	4 cut(s)	25, 209, 646, 913
Fsp4HI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
FspBI	CTAG	2 cut(s)	155, 767
GlaI	GCGC	2 cut(s)	625, 867
GluI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
HaeIII	GGCC	2 cut(s)	533, 785
HapII	CCGG	2 cut(s)	85, 621
HhaI	GCGC	2 cut(s)	626, 868
Hin1II	CATG	3 cut(s)	418, 824, 1033
Hin6I	GCGC	2 cut(s)	624, 866
HinP1I	GCGC	2 cut(s)	624, 866
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	85, 621
HphI	GGTGA	2 cut(s)	155, 403
Hpy166II	GTNNAC	3 cut(s)	229, 411, 676
Hpy188I	TCNGA	6 cut(s)	297, 351, 462, 726, 849, 1144
Hpy188III	TCNNGA	2 cut(s)	487, 553
Hpy8I	GTNNAC	3 cut(s)	229, 411, 676
HpyAV	CCTTC	3 cut(s)	457, 731, 827
HpyCH4III	ACNGT	5 cut(s)	442, 655, 879, 934, 1149
HpyCH4V	TGCA	9 cut(s)	24, 166, 248, 283, 418, 587, 863, 902, 1033
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 280, 374, 860
HpyF3I	CTNAG	2 cut(s)	72, 288
Hsp92II	CATG	3 cut(s)	418, 824, 1033
HspAI	GCGC	2 cut(s)	624, 866
Kzo9I	GATC	4 cut(s)	575, 604, 642, 1083
LguI	GCTCTTC	1 cut(s)	689
Lsp1109I	GCAGC	6 cut(s)	124, 178, 232, 356, 430, 875
LweI	GCATC	1 cut(s)	968
MabI	ACCWGGT	1 cut(s)	1035
MaeI	CTAG	2 cut(s)	155, 767
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	4 cut(s)	577, 606, 644, 1085
MboI	GATC	4 cut(s)	575, 604, 642, 1083
MboII	GAAGA	8 cut(s)	308, 457, 706, 873, 883, 937, 1012, 1093
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	785
MluNI	TGGCCA	1 cut(s)	785
MnlI	CCTC	5 cut(s)	61, 140, 235, 324, 523
Mox20I	TGGCCA	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	4 cut(s)	393, 404, 429, 1101
MslI	CAYNNNNRTG	1 cut(s)	1028
Msp20I	TGGCCA	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	85, 621
MspR9I	CCNGG	2 cut(s)	665, 1037
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	665, 1037
MwoI	GCNNNNNNNGC	4 cut(s)	30, 280, 374, 860
NdeII	GATC	4 cut(s)	575, 604, 642, 1083
NlaIII	CATG	3 cut(s)	418, 824, 1033
NlaIV	GGNNCC	2 cut(s)	48, 592
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	114, 168, 247, 346, 420, 865
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	663, 1035
PspGI	CCWGG	2 cut(s)	663, 1035
PspN4I	GGNNCC	2 cut(s)	48, 592
PspPI	GGNCC	2 cut(s)	532, 797
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	1 cut(s)	1028
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	4 cut(s)	393, 404, 429, 1101
SatI	GCNGC	6 cut(s)	113, 167, 246, 345, 419, 864
Sau3AI	GATC	4 cut(s)	575, 604, 642, 1083
Sau96I	GGNCC	2 cut(s)	532, 797
SbfI	CCTGCAGG	1 cut(s)	589
ScaI	AGTACT	1 cut(s)	923
ScrFI	CCNGG	2 cut(s)	665, 1037
SdaI	CCTGCAGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	121
SexAI	ACCWGGT	1 cut(s)	1035
SfaNI	GCATC	1 cut(s)	968
SfcI	CTRYAG	3 cut(s)	438, 585, 933
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	1028
Sse8387I	CCTGCAGG	1 cut(s)	589
SspMI	CTAG	2 cut(s)	155, 767
StyD4I	CCNGG	2 cut(s)	663, 1035
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	5 cut(s)	442, 655, 879, 934, 1149
TaqI	TCGA	2 cut(s)	53, 617
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	4 cut(s)	393, 404, 429, 1101
Tru9I	TTAA	4 cut(s)	393, 404, 429, 1101
TscAI	CASTG	5 cut(s)	31, 447, 530, 601, 937
TseI	GCWGC	6 cut(s)	112, 166, 245, 344, 418, 863
TspDTI	ATGAA	7 cut(s)	17, 515, 809, 1007, 1012, 1087, 1141
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	5 cut(s)	31, 447, 530, 601, 937
VpaK11BI	GGWCC	1 cut(s)	797
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	3 cut(s)	203, 994, 1008
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	2 cut(s)	155, 767
ZrmI	AGTACT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.