Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Forward (+)

17192664 .. 17203398

Gene Structure 10735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G187700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAACGGGATGATAGAATGCAGTGTATGCCATTCAAAGTTGGTTTCCCCGAACACTAAAGCTTTCTCGAGGGCATATGACCGCCACAAGAGCAGGTTATCATCCAAGCAACGTGTTCTCAATGTCCTCTTGGTCGTTGGTGATTGTATGCTAGTCGGTTTACAGCCTATTCTGGTTTATATGTCCAAGGTCGATGGAAAATTCGAATTTAGCCCGATTAGTGTAAACTTTTTGACAGAGGCTGCAAAGGTTCTATTTGCGGTTGTCATGCTGCTGTTGCAGGCTAGGAATCAGAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCAACATTCGTGCAGGCGGCTAGGAACAATGTGCTTCTTGCTGTTCCAGCATTTCTTTATGCTATTAATAACTATTTAAAGTTCACCATGCAGCTATATTTCAATCCTGCAACTGTGAAGATGCTCAGCAATTTGAAGGTGTTGGTGATTGCTGTTTTATTAAAAATGATAATGAAACGCCGATTTTCAATAATTCAGTGGGAAGCCCTTGCTTTGTTGCTCATCGGGATTAGCGTAAATCAGTTGCGATCTTTACCGGAGGGTTCCACTGCTTTAGGTCTTCCAGTTTCGACAGGCGCATATGTATACACTTTGATCTTTGTAACAGTTCCATCCTTGGCCTCTGTTTACAATGAGTATGCTCTGAAGAGCCAATATGACACAAGTATATACCTCCAGAACTTATTTTTATATGGATATGGTGCTATATTCAACTTTCTAGGAATATTGGTAATGGCCATTGTCAAAGGTCCAAGTAGCTTTGATATCCTTCATGGTCATTCAAAAGCTACAATGTTTCTGATAGCTAACAATGCAGCACAAGGAATTCTGTCCTCTTTTTTCTTCAAATATGCAGATACGATTCTAAAGAAGTACTCGTCCACAGTGGCCACTATCTTCACAGGCATAGCATCTGCTTTGCTGTTTGGTCATAAATTGACGATGAACTTTGTTTTAGGAATTTCTATTGTCTTCATCTCGATGCACCAGTTCTTTTCTCCCATTTCGAAAGTCAAAGAAGAGGAACAAAATGGGAAGCTAGAAATGATAGATGTCGATGATAAACAGAGGTCAAAGGATTCCTTTATCAATATGGCAGCAGGGGCAAATGAAGAGGCTAGTCACCGAGTGGGACCTGATGAAAGACAGCCGCTTTTACCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

404

Amino Acids

44.68

Weight (kDa)

9.49

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	4 cut(s)	82, 260, 341, 1196
AcoI	YGGCCR	2 cut(s)	780, 933
AcsI	RAATTY	4 cut(s)	200, 206, 870, 1005
AcuI	CTGAAG	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	1174
AfaI	GTAC	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	8 cut(s)	36, 327, 427, 460, 513, 757, 828, 892
AluBI	AGCT	6 cut(s)	62, 418, 804, 833, 851, 1084
AluI	AGCT	6 cut(s)	62, 418, 804, 833, 851, 1084
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	3 cut(s)	663, 780, 933
ApeKI	GCWGC	5 cut(s)	242, 271, 415, 860, 1142
ApoI	RAATTY	4 cut(s)	200, 206, 870, 1005
AseI	ATTAAT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	794, 1178
AsuHPI	GGTGA	4 cut(s)	152, 400, 481, 1160
AsuII	TTCGAA	2 cut(s)	204, 1052
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	794, 1178
BalI	TGGCCA	2 cut(s)	782, 935
BbsI	GAAGAC	2 cut(s)	596, 1009
BbvI	GCAGC	5 cut(s)	229, 258, 427, 872, 1154
BccI	CCATC	2 cut(s)	188, 664
BfaI	CTAG	6 cut(s)	152, 285, 345, 764, 1085, 1164
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	7 cut(s)	243, 272, 342, 416, 861, 1143, 1196
BlpI	GCTNAGC	1 cut(s)	449
BlsI	GCNGC	7 cut(s)	244, 273, 343, 417, 862, 1144, 1197
BmcAI	AGTACT	1 cut(s)	920
Bme18I	GGWCC	2 cut(s)	794, 1178
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	794, 1178
BmiI	GGNNCC	2 cut(s)	589, 1179
BmsI	GCATC	3 cut(s)	435, 965, 1017
BpiI	GAAGAC	2 cut(s)	596, 1009
BpmI	CTGGAG	1 cut(s)	704
Bpu1102I	GCTNAGC	1 cut(s)	449
Bpu14I	TTCGAA	2 cut(s)	204, 1052
BsaJI	CCNNGG	2 cut(s)	186, 660
BsaWI	WCCGGW	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	608, 1033
BseDI	CCNNGG	2 cut(s)	186, 660
BseGI	GGATG	3 cut(s)	15, 101, 656
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	608, 1033
BseXI	GCAGC	5 cut(s)	229, 258, 427, 872, 1154
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	665, 782, 935
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	581
BslFI	GGGAC	1 cut(s)	1191
BsmFI	GGGAC	1 cut(s)	1191
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	665, 782, 935
BsoBI	CYCGRG	1 cut(s)	67
Bsp119I	TTCGAA	2 cut(s)	204, 1052
Bsp143I	GATC	2 cut(s)	572, 639
Bsp1720I	GCTNAGC	1 cut(s)	449
BspACI	CCGC	4 cut(s)	82, 260, 341, 1196
BspANI	GGCC	3 cut(s)	665, 782, 935
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	589, 1179
BspMI	ACCTGC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	686
BspT104I	TTCGAA	2 cut(s)	204, 1052
BsrI	ACTGG	2 cut(s)	608, 1033
BssECI	CCNNGG	2 cut(s)	186, 660
BssMI	GATC	2 cut(s)	572, 639
BssNAI	GTATAC	1 cut(s)	631
BssT1I	CCWWGG	2 cut(s)	186, 660
Bst1107I	GTATAC	1 cut(s)	631
Bst4CI	ACNGT	3 cut(s)	439, 652, 931
Bst6I	CTCTTC	4 cut(s)	318, 686, 1059, 1152
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBI	TTCGAA	2 cut(s)	204, 1052
BstC8I	GCNNGC	2 cut(s)	282, 339
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	15, 101, 656
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	2 cut(s)	575, 642
BstMBI	GATC	2 cut(s)	572, 639
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 90, 277, 371, 857, 1148
BstV1I	GCAGC	5 cut(s)	229, 258, 427, 872, 1154
BstV2I	GAAGAC	2 cut(s)	596, 1009
BstZ17I	GTATAC	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	665, 782, 935
BtsCI	GGATG	3 cut(s)	15, 101, 656
BtsI	GCAGTG	2 cut(s)	28, 591
BtsIMutI	CAGTG	4 cut(s)	28, 527, 591, 936
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	282, 339
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	794, 1178
Csp6I	GTAC	1 cut(s)	919
CviAII	CATG	3 cut(s)	268, 412, 818
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	2 cut(s)	574, 641
DpnII	GATC	2 cut(s)	572, 639
DraI	TTTAAA	1 cut(s)	402
DraIII	CACNNNGTG	1 cut(s)	1174
EaeI	YGGCCR	2 cut(s)	780, 933
Eam1104I	CTCTTC	4 cut(s)	318, 686, 1059, 1152
EarI	CTCTTC	4 cut(s)	318, 686, 1059, 1152
Eco130I	CCWWGG	2 cut(s)	186, 660
Eco32I	GATATC	1 cut(s)	811
Eco47I	GGWCC	2 cut(s)	794, 1178
Eco57I	CTGAAG	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	1178
EcoRI	GAATTC	1 cut(s)	870
EcoRV	GATATC	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	186, 660
ErhI	CCWWGG	2 cut(s)	186, 660
FaeI	CATG	3 cut(s)	271, 415, 821
FalI	AAGNNNNNCTT	2 cut(s)	1112, 1144
FaqI	GGGAC	1 cut(s)	1191
FatI	CATG	3 cut(s)	267, 411, 817
FauNDI	CATATG	2 cut(s)	76, 625
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	7 cut(s)	243, 272, 342, 416, 861, 1143, 1196
FokI	GGATG	3 cut(s)	22, 88, 643
Fsp4HI	GCNGC	7 cut(s)	243, 272, 342, 416, 861, 1143, 1196
FspBI	CTAG	6 cut(s)	152, 285, 345, 764, 1085, 1164
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	7 cut(s)	243, 272, 342, 416, 861, 1143, 1196
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	665, 782, 935
HapII	CCGG	1 cut(s)	581
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	271, 415, 821
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	3 cut(s)	289, 907, 1124
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	4 cut(s)	152, 400, 481, 1160
Hpy166II	GTNNAC	6 cut(s)	161, 226, 408, 631, 673, 927
Hpy188I	TCNGA	3 cut(s)	294, 690, 846
Hpy188III	TCNNGA	4 cut(s)	67, 550, 721, 1024
Hpy8I	GTNNAC	6 cut(s)	161, 226, 408, 631, 673, 927
HpyAV	CCTTC	2 cut(s)	454, 824
HpyCH4III	ACNGT	3 cut(s)	439, 652, 931
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	9 cut(s)	21, 245, 280, 337, 415, 434, 860, 899, 1030
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 90, 277, 371, 857, 1148
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	3 cut(s)	271, 415, 821
HspAI	GCGC	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	572, 639
LguI	GCTCTTC	1 cut(s)	686
Lsp1109I	GCAGC	5 cut(s)	229, 258, 427, 872, 1154
LweI	GCATC	3 cut(s)	435, 965, 1017
MaeI	CTAG	6 cut(s)	152, 285, 345, 764, 1085, 1164
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	646, 1166
MalI	GATC	2 cut(s)	574, 641
MboI	GATC	2 cut(s)	572, 639
MboII	GAAGA	9 cut(s)	305, 454, 596, 703, 880, 934, 1009, 1076, 1169
MlsI	TGGCCA	2 cut(s)	782, 935
MluCI	AATT	8 cut(s)	200, 206, 321, 454, 516, 870, 980, 1005
MluNI	TGGCCA	2 cut(s)	782, 935
Mox20I	TGGCCA	2 cut(s)	782, 935
MscI	TGGCCA	2 cut(s)	782, 935
MseI	TTAA	3 cut(s)	390, 401, 485
MslI	CAYNNNNRTG	1 cut(s)	1025
Msp20I	TGGCCA	2 cut(s)	782, 935
MspI	CCGG	1 cut(s)	581
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	27, 90, 277, 371, 857, 1148
NdeI	CATATG	2 cut(s)	76, 625
NdeII	GATC	2 cut(s)	572, 639
NlaIII	CATG	3 cut(s)	271, 415, 821
NlaIV	GGNNCC	2 cut(s)	589, 1179
NmuCI	GTSAC	1 cut(s)	1166
NspV	TTCGAA	2 cut(s)	204, 1052
PaeR7I	CTCGAG	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	3 cut(s)	289, 907, 1124
PkrI	GCNGC	7 cut(s)	244, 273, 343, 417, 862, 1144, 1197
PpuMI	RGGWCCY	1 cut(s)	1178
PshBI	ATTAAT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	1178
PspN4I	GGNNCC	2 cut(s)	589, 1179
PspPI	GGNCC	2 cut(s)	794, 1178
PspPPI	RGGWCCY	1 cut(s)	1178
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	1 cut(s)	1025
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	390, 401, 485
SatI	GCNGC	7 cut(s)	243, 272, 342, 416, 861, 1143, 1196
Sau3AI	GATC	2 cut(s)	572, 639
Sau96I	GGNCC	2 cut(s)	794, 1178
ScaI	AGTACT	1 cut(s)	920
SfaNI	GCATC	3 cut(s)	435, 965, 1017
Sfr274I	CTCGAG	1 cut(s)	67
SfuI	TTCGAA	2 cut(s)	204, 1052
SinI	GGWCC	2 cut(s)	794, 1178
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	1025
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	8 cut(s)	200, 206, 321, 454, 516, 870, 980, 1005
SsiI	CCGC	4 cut(s)	82, 260, 341, 1196
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	6 cut(s)	152, 285, 345, 764, 1085, 1164
StyI	CCWWGG	2 cut(s)	186, 660
TaaI	ACNGT	3 cut(s)	439, 652, 931
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	7 cut(s)	68, 192, 204, 614, 1025, 1052, 1101
TasI	AATT	8 cut(s)	200, 206, 321, 454, 516, 870, 980, 1005
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	344, 1198
TfiI	GAWTC	3 cut(s)	289, 907, 1124
Tru1I	TTAA	3 cut(s)	390, 401, 485
Tru9I	TTAA	3 cut(s)	390, 401, 485
TscAI	CASTG	4 cut(s)	28, 527, 598, 936
TseFI	GTSAC	1 cut(s)	1166
TseI	GCWGC	5 cut(s)	242, 271, 415, 860, 1142
Tsp45I	GTSAC	1 cut(s)	1166
TspDTI	ATGAA	7 cut(s)	17, 512, 806, 1004, 1009, 1170, 1200
TspRI	CASTG	4 cut(s)	28, 527, 598, 936
VpaK11BI	GGWCC	2 cut(s)	794, 1178
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	4 cut(s)	200, 206, 870, 1005
XhoI	CTCGAG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	6 cut(s)	152, 285, 345, 764, 1085, 1164
ZrmI	AGTACT	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.