Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Forward (+)

35190091 .. 35200292

Gene Structure 10202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGATTTTCATTGCTACGTTGAAATTGAGTTGTGGCGACTGTGGATCTGAATCCAACTCTCGGATCAATGAGCTGACCATAGCTCCGCCTCATTGTTCTAATTCGATTCGACTCTGTGTCGAGTTTGACAGAGGTAAAGCTTTCTCTAAGGCTTATGACCGGCACAAGAGTAGGCTATCATCCAAGCAGCGTGCTCTCAATGTCCTCTTGGTCGTTGGTGATTGTATGCTAGTTGGTTTGCAGCCAATTCTGGTTTATATGTCCAAGGTGGATGGAAAATTTGATTTTAGCCCAATTAGTGTCAACTTTTTGACGGAGGCTGCAAAGGTTCTATTTGCTATTGTTATGCTCTTGTTGCAGGCTAAGAATCAGAAAGTCGGGGAGAAGCCTCTTCTCTCGGTTTCTACATTCACACAGGCAGCTCGGAACAATGTGCTTCTTGCTGTTCCAGCATTTCTATATGCTATTAATAACTATTTAAAGTTCACCATGCAGCTGTATTTTAATCCTGCTACAGTGAAGATGTTGAGCAATCTGAAGGTGTTGGTTATTGCTGTTCTCCTGAAAATGATAATGAAACGCCGATTTTCCATAATTCAGTGGGAGGCCCTTGCTTTGTTGCTCATTGGGATTAGTGTAAATCAGTTGCGATCTTTACCTGCAGGTTCCACTGCTTTAGATCTAACAATTTCGACCGGCGCATACATATACACGCTGATCTTTGTAACAGTTCCATCCCTGGCTTCTGTCTACAATGAGTATGCTTTGAAGAGCCAATATGACACAAGCATATACCTTCAGAACTTATTTTTATATGGGTATGGTGCTATATTCAACTTTCTAGGAATAGTGGTAATGGCCATTGTCAAAGGTCCAAGTAGCTTTGATATCCTTCATGGTCATTCAAAAGCTACAATGTTTCTGATAGCAAACAATGCAGCGCAAGGAATACTGTCTTCTTTTTTCTTCAAATATGCAGATACAATTCTAAAGAAGTACTCATCCACTGTAGCCACTATCTTCACAGGCATAGCATCTGCTGTGCTATTTGGTCATACTTTGACTATGAATTTTGTTTTAGGAATTTCTATTGTCTTCATCTCCATGCACCAGGTAATTATAGCAGATTTTTGTTTTTGTTTTCTTATTTATGCGAAGATCAATTTTCAATTCAATAAGTATAAATTAGGAAAAGCTTGCTTTCTATATATTTTCTCTGAACAGTTCATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

412

Amino Acids

45.65

Weight (kDa)

9.47

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	84 - 369	3.6e-32	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	653, 667
AccI	GTMKAC	1 cut(s)	750
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	2 cut(s)	52, 71
AcoI	YGGCCR	1 cut(s)	858
AcsI	RAATTY	3 cut(s)	278, 1069, 1083
AcuI	CTGAAG	2 cut(s)	557, 782
AfaI	GTAC	1 cut(s)	998
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	7 cut(s)	22, 769, 835, 906, 970, 1169, 1174
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	738, 1110
AjuI	GAANNNNNNNTTGG	1 cut(s)	1212
AluBI	AGCT	8 cut(s)	73, 83, 140, 422, 496, 882, 911, 1196
AluI	AGCT	8 cut(s)	73, 83, 140, 422, 496, 882, 911, 1196
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	52, 71
AoxI	GGCC	2 cut(s)	606, 858
ApeKI	GCWGC	6 cut(s)	187, 241, 320, 419, 493, 938
ApoI	RAATTY	3 cut(s)	278, 1069, 1083
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	701, 943
AspS9I	GGNCC	2 cut(s)	607, 872
AsuHPI	GGTGA	2 cut(s)	230, 478
AvaII	GGWCC	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	860
BbsI	GAAGAC	2 cut(s)	948, 1087
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	6 cut(s)	199, 253, 307, 431, 505, 950
BccI	CCATC	2 cut(s)	266, 742
BciT130I	CCWGG	2 cut(s)	740, 1112
BfaI	CTAG	2 cut(s)	230, 842
BfmI	CTRYAG	3 cut(s)	513, 660, 1008
BfuAI	ACCTGC	2 cut(s)	653, 667
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	6 cut(s)	188, 242, 321, 420, 494, 939
BlsI	GCNGC	6 cut(s)	189, 243, 322, 421, 495, 940
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	2 cut(s)	740, 1112
Bme18I	GGWCC	1 cut(s)	872
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	607, 872
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	2 cut(s)	740, 1112
BmsI	GCATC	1 cut(s)	1043
BpiI	GAAGAC	2 cut(s)	948, 1087
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	264, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	2 cut(s)	159, 695
Bse3DI	GCAATG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	740, 1112
BseDI	CCNNGG	2 cut(s)	264, 738
BseGI	GGATG	4 cut(s)	179, 277, 734, 1001
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	9
BseXI	GCAGC	6 cut(s)	199, 253, 307, 431, 505, 950
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	608, 860
BsiEI	CGRYCG	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	160, 696
BslI	CCNNNNNNNGG	1 cut(s)	60
BsnI	GGCC	2 cut(s)	608, 860
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	608, 860
BspLI	GGNNCC	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	2 cut(s)	653, 667
BspPI	GGATC	2 cut(s)	52, 71
BspQI	GCTCTTC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	2 cut(s)	159, 695
BssAI	RCCGGY	2 cut(s)	159, 695
BssECI	CCNNGG	2 cut(s)	264, 738
BssMI	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	740, 1112
Bst4CI	ACNGT	6 cut(s)	41, 517, 730, 954, 1009, 1224
Bst6I	CTCTTC	2 cut(s)	396, 764
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	3 cut(s)	192, 360, 1198
BstDEI	CTNAG	2 cut(s)	147, 363
BstF5I	GGATG	4 cut(s)	179, 277, 734, 1001
BstHHI	GCGC	2 cut(s)	701, 943
BstKTI	GATC	6 cut(s)	47, 66, 653, 682, 720, 1161
BstMBI	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 449, 935
BstNI	CCWGG	2 cut(s)	740, 1112
BstSCI	CCNGG	2 cut(s)	738, 1110
BstSFI	CTRYAG	3 cut(s)	513, 660, 1008
BstV1I	GCAGC	6 cut(s)	199, 253, 307, 431, 505, 950
BstV2I	GAAGAC	2 cut(s)	948, 1087
BstX2I	RGATCY	2 cut(s)	44, 679
BstYI	RGATCY	2 cut(s)	44, 679
BsuRI	GGCC	2 cut(s)	608, 860
BtsCI	GGATG	4 cut(s)	179, 277, 734, 1001
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	4 cut(s)	522, 605, 669, 1005
BveI	ACCTGC	2 cut(s)	653, 667
Cac8I	GCNNGC	3 cut(s)	192, 360, 1198
CfoI	GCGC	2 cut(s)	701, 943
Cfr10I	RCCGGY	2 cut(s)	159, 695
Cfr13I	GGNCC	2 cut(s)	607, 872
CsiI	ACCWGGT	1 cut(s)	1110
Csp6I	GTAC	1 cut(s)	997
CviAII	CATG	3 cut(s)	490, 896, 1105
CviQI	GTAC	1 cut(s)	997
DdeI	CTNAG	2 cut(s)	147, 363
DpnI	GATC	6 cut(s)	46, 65, 652, 681, 719, 1160
DpnII	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
DraI	TTTAAA	1 cut(s)	480
DriI	GACNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	858
Eam1104I	CTCTTC	2 cut(s)	396, 764
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EarI	CTCTTC	2 cut(s)	396, 764
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	889
Eco47I	GGWCC	1 cut(s)	872
Eco57I	CTGAAG	2 cut(s)	557, 782
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	738, 1110
EcoRV	GATATC	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	493, 899, 1108
FatI	CATG	3 cut(s)	489, 895, 1104
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	6 cut(s)	188, 242, 321, 420, 494, 939
FokI	GGATG	4 cut(s)	166, 284, 721, 988
Fsp4HI	GCNGC	6 cut(s)	188, 242, 321, 420, 494, 939
FspBI	CTAG	2 cut(s)	230, 842
GlaI	GCGC	2 cut(s)	700, 942
GluI	GCNGC	6 cut(s)	188, 242, 321, 420, 494, 939
HaeIII	GGCC	2 cut(s)	608, 860
HapII	CCGG	2 cut(s)	160, 696
HhaI	GCGC	2 cut(s)	701, 943
Hin1II	CATG	3 cut(s)	493, 899, 1108
Hin6I	GCGC	2 cut(s)	699, 941
HinP1I	GCGC	2 cut(s)	699, 941
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	138, 1194
HinfI	GANTC	4 cut(s)	50, 106, 111, 367
HpaII	CCGG	2 cut(s)	160, 696
HphI	GGTGA	2 cut(s)	230, 478
Hpy166II	GTNNAC	3 cut(s)	304, 486, 751
Hpy188I	TCNGA	8 cut(s)	49, 63, 372, 426, 537, 801, 924, 1219
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	3 cut(s)	304, 486, 751
HpyAV	CCTTC	3 cut(s)	532, 806, 902
HpyCH4III	ACNGT	6 cut(s)	41, 517, 730, 954, 1009, 1224
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	8 cut(s)	241, 323, 358, 493, 662, 938, 977, 1108
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 449, 935
HpyF3I	CTNAG	2 cut(s)	147, 363
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	493, 899, 1108
HspAI	GCGC	2 cut(s)	699, 941
Kzo9I	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	6 cut(s)	199, 253, 307, 431, 505, 950
LweI	GCATC	1 cut(s)	1043
MabI	ACCWGGT	1 cut(s)	1110
MaeI	CTAG	2 cut(s)	230, 842
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	6 cut(s)	46, 65, 652, 681, 719, 1160
MboI	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
MboII	GAAGA	8 cut(s)	383, 532, 781, 948, 958, 1012, 1087, 1168
MflI	RGATCY	2 cut(s)	44, 679
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	860
MluNI	TGGCCA	1 cut(s)	860
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	99, 125, 215, 310, 399, 598
Mox20I	TGGCCA	1 cut(s)	860
MscI	TGGCCA	1 cut(s)	860
MseI	TTAA	3 cut(s)	468, 479, 504
MslI	CAYNNNNRTG	1 cut(s)	1103
Msp20I	TGGCCA	1 cut(s)	860
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	2 cut(s)	160, 696
MspR9I	CCNGG	2 cut(s)	740, 1112
MvaI	CCWGG	2 cut(s)	740, 1112
MwoI	GCNNNNNNNGC	3 cut(s)	355, 449, 935
NdeII	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
NlaIII	CATG	3 cut(s)	493, 899, 1108
NlaIV	GGNNCC	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	50, 106, 367
PkrI	GCNGC	6 cut(s)	189, 243, 322, 421, 495, 940
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	738, 1110
PspGI	CCWGG	2 cut(s)	738, 1110
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	2 cut(s)	607, 872
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	44, 679
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	1 cut(s)	998
RsaNI	GTAC	1 cut(s)	997
RseI	CAYNNNNRTG	1 cut(s)	1103
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	468, 479, 504
SatI	GCNGC	6 cut(s)	188, 242, 321, 420, 494, 939
Sau3AI	GATC	6 cut(s)	44, 63, 650, 679, 717, 1158
Sau96I	GGNCC	2 cut(s)	607, 872
SbfI	CCTGCAGG	1 cut(s)	664
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	2 cut(s)	740, 1112
SdaI	CCTGCAGG	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	196
SexAI	ACCWGGT	1 cut(s)	1110
SfaNI	GCATC	1 cut(s)	1043
SfcI	CTRYAG	3 cut(s)	513, 660, 1008
SinI	GGWCC	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	1103
Sse8387I	CCTGCAGG	1 cut(s)	664
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	230, 842
StyD4I	CCNGG	2 cut(s)	738, 1110
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	6 cut(s)	41, 517, 730, 954, 1009, 1224
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	4 cut(s)	104, 109, 120, 692
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	3 cut(s)	50, 106, 367
Tru1I	TTAA	3 cut(s)	468, 479, 504
Tru9I	TTAA	3 cut(s)	468, 479, 504
TscAI	CASTG	4 cut(s)	522, 605, 676, 1012
TseI	GCWGC	6 cut(s)	187, 241, 320, 419, 493, 938
TspDTI	ATGAA	5 cut(s)	590, 884, 1082, 1087, 1216
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	4 cut(s)	522, 605, 676, 1012
VpaK11BI	GGWCC	1 cut(s)	872
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	3 cut(s)	278, 1069, 1083
XmiI	GTMKAC	1 cut(s)	750
XspI	CTAG	2 cut(s)	230, 842
ZrmI	AGTACT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.