Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Reverse (-)

29410522 .. 29419863

Gene Structure 9342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAACAACGGGATGATAGAATGCAGTGTATGCCATTCAAAGTTGGTTCCCTCGAATAGTAAAGCTTTCTCTAAGGCTTATGACCGGCACAAGAGTAGGCTATCGTCCAAGCAGCGTGCTCTCAATGTCCTCTTGGTCGTTGGTGATTGTATGCTAGTTGGTTTGCAGGTGGATGGAAAATTTGATTTTAGCCCGATTAGTGTCAACTTTTTGACGGAGGCTGCAAAGGTTCTATTTGCTGTTGTTATGCTCTTGTTGCAGGCTAAGAATCAGAAAGTCGGGGAGAAGCCTCTTCTCTCAATTTCTACATTCACACAGGCAGCTCGGAACAATGTGCTTCTTGCTGTTCCAGCATTTCTATATGCTATTAATAACTATTTAAAGTTCACCATGCAGCTGTATTTTAATCCTGCAACAGTGAAGATGTTGAGCAATCTGAAGGTGTTGGTTATTGCTGTTCTCCTGAAAATGATAATGAAACGCCGATTTTCCATAATTCAGTGGGAGGCCCTTGCTTTGTTGCTCATCGGGATTAGTGTAAATCAGTTGCGATCTTTACCTGCAGGTTCCACTGCTTTAGATCTAACAATTTCGACCGGCGCATACATATACACGCTGATCTTTGTAACAGTTCCATCCCTGGCTTCTGTCTACAATGAGTATGCTTTGAAGAGCCAATATGACACAAGCATATACCTTCAGAACTTATTTTTATATGGGTATGGTGCTATATTCAACTTTCTAGGAATAGTGGTAATGGCCATTGTCAAAGGTCCAAGTAGCTTTGATATCCTTCATGGTCATTCAAAAGCTACAATGTTTCTGATAGCAAACAATGCAGCGCAAGGAATACTGTCTTCTTTTTTCTTCAAATATGCAGATACAATTCTAAAGAAGTACTCATCCACTGTAGCCACTATCTTCACAGGCATAGCATCTGCTGTGCTATTTGGTCATACTTTGACTATGAATTTTGTTTTAGGAATTTCTATTGTCTTCATCTCCATGCACCAGTTCTTTTCTCCTATTTCAAAAGCCAAAGATGAAGAACAAAATGGGAAGCTAGAATTGGTAGATGTCCATGATGATCACAGGTCAAAGGATTCCTTTATAAATATGGCAGCAGGAGCAAACGAAGAGGCTAGTCACCGTGTAGGCTCTGACGAAAGACAGCCACTTCTACCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

396

Amino Acids

43.66

Weight (kDa)

9.34

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	67 - 336	5.1e-32	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1112
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	3 cut(s)	157, 554, 568
AccI	GTMKAC	1 cut(s)	651
AcoI	YGGCCR	1 cut(s)	759
AcsI	RAATTY	3 cut(s)	179, 970, 984
AcuI	CTGAAG	2 cut(s)	458, 683
AfaI	GTAC	1 cut(s)	899
AgsI	TTSAA	6 cut(s)	39, 670, 736, 807, 871, 1032
AjnI	CCWGG	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	2 cut(s)	1052, 1084
AluBI	AGCT	6 cut(s)	65, 323, 397, 783, 812, 1063
AluI	AGCT	6 cut(s)	65, 323, 397, 783, 812, 1063
Alw21I	GWGCWC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	507, 759
ApeKI	GCWGC	6 cut(s)	112, 221, 320, 394, 839, 1121
ApoI	RAATTY	3 cut(s)	179, 970, 984
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	602, 844
AspS9I	GGNCC	2 cut(s)	508, 773
AsuHPI	GGTGA	3 cut(s)	155, 379, 1139
AvaII	GGWCC	1 cut(s)	773
BalI	TGGCCA	1 cut(s)	761
BbsI	GAAGAC	2 cut(s)	849, 988
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	6 cut(s)	124, 208, 332, 406, 851, 1133
BccI	CCATC	2 cut(s)	167, 643
BciT130I	CCWGG	1 cut(s)	641
BclI	TGATCA	1 cut(s)	1087
BfaI	CTAG	4 cut(s)	155, 743, 1064, 1143
BfmI	CTRYAG	2 cut(s)	561, 909
BfuAI	ACCTGC	3 cut(s)	157, 554, 568
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	6 cut(s)	113, 222, 321, 395, 840, 1122
BlsI	GCNGC	6 cut(s)	114, 223, 322, 396, 841, 1123
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	508, 773
BmiI	GGNNCC	2 cut(s)	48, 568
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	1 cut(s)	944
BpiI	GAAGAC	2 cut(s)	849, 988
BsaJI	CCNNGG	1 cut(s)	639
Bse118I	RCCGGY	2 cut(s)	84, 596
Bse1I	ACTGG	1 cut(s)	1012
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	4 cut(s)	18, 178, 635, 902
BseNI	ACTGG	1 cut(s)	1012
BseXI	GCAGC	6 cut(s)	124, 208, 332, 406, 851, 1133
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	509, 761
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	85, 597
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	509, 761
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	551, 580, 618, 1087
BspANI	GGCC	2 cut(s)	509, 761
BspLI	GGNNCC	2 cut(s)	48, 568
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	3 cut(s)	157, 554, 568
BspQI	GCTCTTC	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	84, 596
BsrI	ACTGG	1 cut(s)	1012
BssAI	RCCGGY	2 cut(s)	84, 596
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	4 cut(s)	551, 580, 618, 1087
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	5 cut(s)	418, 631, 855, 910, 1151
Bst6I	CTCTTC	3 cut(s)	297, 665, 1131
BstAPI	GCANNNNNTGC	2 cut(s)	30, 836
BstC8I	GCNNGC	2 cut(s)	117, 261
BstDEI	CTNAG	2 cut(s)	72, 264
BstF5I	GGATG	4 cut(s)	18, 178, 635, 902
BstHHI	GCGC	2 cut(s)	602, 844
BstKTI	GATC	4 cut(s)	554, 583, 621, 1090
BstMBI	GATC	4 cut(s)	551, 580, 618, 1087
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 256, 350, 836, 1127
BstNI	CCWGG	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	2 cut(s)	561, 909
BstV1I	GCAGC	6 cut(s)	124, 208, 332, 406, 851, 1133
BstV2I	GAAGAC	2 cut(s)	849, 988
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	509, 761
BtsCI	GGATG	4 cut(s)	18, 178, 635, 902
BtsI	GCAGTG	2 cut(s)	31, 570
BtsIMutI	CAGTG	5 cut(s)	31, 423, 506, 570, 906
BveI	ACCTGC	3 cut(s)	157, 554, 568
Cac8I	GCNNGC	2 cut(s)	117, 261
CfoI	GCGC	2 cut(s)	602, 844
Cfr10I	RCCGGY	2 cut(s)	84, 596
Cfr13I	GGNCC	2 cut(s)	508, 773
Csp6I	GTAC	1 cut(s)	898
CviAII	CATG	4 cut(s)	391, 797, 1006, 1082
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	2 cut(s)	72, 264
DpnI	GATC	4 cut(s)	553, 582, 620, 1089
DpnII	GATC	4 cut(s)	551, 580, 618, 1087
DraI	TTTAAA	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	3 cut(s)	297, 665, 1131
EarI	CTCTTC	3 cut(s)	297, 665, 1131
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	458, 683
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	639
EcoRV	GATATC	1 cut(s)	790
FaeI	CATG	4 cut(s)	394, 800, 1009, 1085
FalI	AAGNNNNNCTT	2 cut(s)	1091, 1123
FatI	CATG	4 cut(s)	390, 796, 1005, 1081
FbaI	TGATCA	1 cut(s)	1087
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	6 cut(s)	113, 222, 321, 395, 840, 1122
FokI	GGATG	4 cut(s)	25, 185, 622, 889
Fsp4HI	GCNGC	6 cut(s)	113, 222, 321, 395, 840, 1122
FspBI	CTAG	4 cut(s)	155, 743, 1064, 1143
GlaI	GCGC	2 cut(s)	601, 843
GluI	GCNGC	6 cut(s)	113, 222, 321, 395, 840, 1122
HaeIII	GGCC	2 cut(s)	509, 761
HapII	CCGG	2 cut(s)	85, 597
HhaI	GCGC	2 cut(s)	602, 844
Hin1II	CATG	4 cut(s)	394, 800, 1009, 1085
Hin6I	GCGC	2 cut(s)	600, 842
HinP1I	GCGC	2 cut(s)	600, 842
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	2 cut(s)	268, 1103
HpaII	CCGG	2 cut(s)	85, 597
HphI	GGTGA	3 cut(s)	155, 379, 1139
Hpy166II	GTNNAC	3 cut(s)	205, 387, 652
Hpy188I	TCNGA	6 cut(s)	273, 327, 438, 702, 825, 1162
Hpy188III	TCNNGA	2 cut(s)	463, 529
Hpy8I	GTNNAC	3 cut(s)	205, 387, 652
HpyAV	CCTTC	3 cut(s)	433, 707, 803
HpyCH4III	ACNGT	5 cut(s)	418, 631, 855, 910, 1151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 256, 350, 836, 1127
HpyF3I	CTNAG	2 cut(s)	72, 264
Hsp92II	CATG	4 cut(s)	394, 800, 1009, 1085
HspAI	GCGC	2 cut(s)	600, 842
Ksp22I	TGATCA	1 cut(s)	1087
Kzo9I	GATC	4 cut(s)	551, 580, 618, 1087
LguI	GCTCTTC	1 cut(s)	665
LmnI	GCTCC	1 cut(s)	1127
Lsp1109I	GCAGC	6 cut(s)	124, 208, 332, 406, 851, 1133
LweI	GCATC	1 cut(s)	944
MaeI	CTAG	4 cut(s)	155, 743, 1064, 1143
MaeIII	GTNAC	2 cut(s)	625, 1145
MalI	GATC	4 cut(s)	553, 582, 620, 1089
MboI	GATC	4 cut(s)	551, 580, 618, 1087
MboII	GAAGA	9 cut(s)	284, 433, 682, 849, 859, 913, 988, 1058, 1148
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	8 cut(s)	179, 300, 495, 588, 885, 970, 984, 1067
MluNI	TGGCCA	1 cut(s)	761
MnlI	CCTC	6 cut(s)	61, 140, 211, 300, 499, 1132
Mox20I	TGGCCA	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	3 cut(s)	369, 380, 405
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	85, 597
MspR9I	CCNGG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	5 cut(s)	30, 256, 350, 836, 1127
NdeII	GATC	4 cut(s)	551, 580, 618, 1087
NlaIII	CATG	4 cut(s)	394, 800, 1009, 1085
NlaIV	GGNNCC	2 cut(s)	48, 568
NmuCI	GTSAC	1 cut(s)	1145
PaqCI	CACCTGC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	665
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	268, 1103
PkrI	GCNGC	6 cut(s)	114, 223, 322, 396, 841, 1123
PshBI	ATTAAT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	1112
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	48, 568
PspPI	GGNCC	2 cut(s)	508, 773
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
RseI	CAYNNNNRTG	1 cut(s)	1004
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	3 cut(s)	369, 380, 405
SatI	GCNGC	6 cut(s)	113, 222, 321, 395, 840, 1122
Sau3AI	GATC	4 cut(s)	551, 580, 618, 1087
Sau96I	GGNCC	2 cut(s)	508, 773
SbfI	CCTGCAGG	1 cut(s)	565
ScaI	AGTACT	1 cut(s)	899
ScrFI	CCNGG	1 cut(s)	641
SdaI	CCTGCAGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	944
SfcI	CTRYAG	2 cut(s)	561, 909
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	1 cut(s)	1004
Sse8387I	CCTGCAGG	1 cut(s)	565
Sse9I	AATT	8 cut(s)	179, 300, 495, 588, 885, 970, 984, 1067
SspMI	CTAG	4 cut(s)	155, 743, 1064, 1143
StyD4I	CCNGG	1 cut(s)	639
TaaI	ACNGT	5 cut(s)	418, 631, 855, 910, 1151
TaqI	TCGA	2 cut(s)	53, 593
TasI	AATT	8 cut(s)	179, 300, 495, 588, 885, 970, 984, 1067
TatI	WGTACW	1 cut(s)	897
TfiI	GAWTC	2 cut(s)	268, 1103
Tru1I	TTAA	3 cut(s)	369, 380, 405
Tru9I	TTAA	3 cut(s)	369, 380, 405
TscAI	CASTG	5 cut(s)	31, 423, 506, 577, 913
TseFI	GTSAC	1 cut(s)	1145
TseI	GCWGC	6 cut(s)	112, 221, 320, 394, 839, 1121
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	6 cut(s)	17, 491, 785, 983, 988, 1059
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	5 cut(s)	31, 423, 506, 577, 913
VpaK11BI	GGWCC	1 cut(s)	773
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	3 cut(s)	179, 970, 984
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	4 cut(s)	155, 743, 1064, 1143
ZrmI	AGTACT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.