Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003573.1

Orthogroup ID

OG0008649

Physical Location & Seq

Genomic Coordinates Reverse (-)

190695 .. 203160

Gene Structure 12466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003573.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atggaaacagatgagaatggtaatgaggagattgatggggctacattcgaatccatggaaacatatatggccatgaccatcccaacaagtaaatcagcgatagaggatttgaagaaagtgagattcgagagtgtggaaattgcgagacatgctgggtcgtctatgactcctaatgtgatggtggaaaagcgtctatggaaatcaagttcctgtaacggatgctctcggatcaatgagccgaccatagctccgcctcattgttcgaattcgattcgactctgtgtcgagtttgacagaggtaaagctttctctaaggcttatgaccggcacaagagtaggctatcgtccaagcagcgtgctctcaatgtcctcttggtcgttggtgattgtatgctagttggtttgcagccaattctggtttatatgtccaaggtggatggaaaatttgattttagcccgatcagtgtcaactttttgacggaggctgcaaaggttctatttgctgttgtcatgctcttgttgcaggctaagaatcagaaagtcggggagaagcctcttctctcgatttctacattcacacaggcagctcggaacaatgtgcttcttgctgttccagcatttctatatgctattaataactatttaaagttcaccatgcagctgtattttaatcctgctacagtgaagatgttgagcaatctgaaggtgttggttattgctgttctcctgaaaatgataatgaaacgccgattttccataattcagtgggaggcccttgctttgttgctcatcgggattagtgtaaatcagttgcgatctttacctgcaggttccactgctttagatctaacaatttcgaccggcgcatacatatacacgctgatctttgtaacagttccatccctggcttctgtctacaatgagtatgctttgaagagccaatatgacacaagcatataccttcagaacttatttttatatgggtatggtgctatattcaactttctaggaatagtggtaatggccattgtcaaaggtccaagtagctttgatattcttcatggtcattcaaaagctacaatgtttctgatagcaaacaatgcagcgcaaggaatactgtcttcttttttcttcaaatatgcagatacaattctaaagaagtactcatccactgtagccactatcttcacaggcatagcatctgctgtgctatttggtcatactttgactatgaattttgttttaggcatttctattgtcttcatctccatgcaccagttcttttctcctatttcaaaagccaaagatgaagaacaaaatgggaagctagaattggtagatgtccatgatggtcacaggtcaaaggattcctttataaatatggcagcaggagcaaacgaagaggctagtcaccgtgtaggctctgacgaaagacagccacttctacccacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

484

Amino Acids

53.52

Weight (kDa)

8.94

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43240 AT2G43240 AT3G59360 AT3G59360
fragaria_vesca	FvH4_4g11380 FvH4_4g11380
malus_domestica	MD04G1037800.v1.1 MD13G1273000.v1.1
prunus_persica	Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1 Prupe.1G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407851
rosa_laevigata	RLG00000008693
rosa_multiflora	Rmu_sc0003573.1_g000039
rosa_roxburghii	Rroxscaffold_5G00352410
rosa_rugosa	Rorug04G0081700
rosa_samantha	Rh4AG146800 Rh4BG144300 Rh4CG153300 Rh4DG140800
rosa_wichuraiana	Rw0G022680 Rw4G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1376
Acc36I	ACCTGC	2 cut(s)	818, 832
AccI	GTMKAC	1 cut(s)	915
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	2 cut(s)	69, 1023
AcsI	RAATTY	3 cut(s)	265, 443, 1234
AcuI	CTGAAG	2 cut(s)	722, 947
AfaI	GTAC	1 cut(s)	1163
AgsI	TTSAA	6 cut(s)	112, 934, 1000, 1071, 1135, 1296
AhdI	GACNNNNNGTC	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	2 cut(s)	1316, 1348
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	7 cut(s)	248, 305, 587, 661, 1047, 1076, 1327
AluI	AGCT	7 cut(s)	248, 305, 587, 661, 1047, 1076, 1327
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	3 cut(s)	69, 771, 1023
ApeKI	GCWGC	7 cut(s)	352, 406, 485, 584, 658, 1103, 1385
ApoI	RAATTY	3 cut(s)	265, 443, 1234
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	866, 1108
AspS9I	GGNCC	2 cut(s)	772, 1037
AsuHPI	GGTGA	3 cut(s)	395, 643, 1403
AsuII	TTCGAA	2 cut(s)	48, 263
AvaII	GGWCC	1 cut(s)	1037
BalI	TGGCCA	2 cut(s)	71, 1025
BbsI	GAAGAC	2 cut(s)	1113, 1252
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	7 cut(s)	364, 418, 472, 596, 670, 1115, 1397
BccI	CCATC	6 cut(s)	29, 86, 172, 431, 907, 1343
BciT130I	CCWGG	1 cut(s)	905
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	4 cut(s)	395, 1007, 1328, 1407
BfmI	CTRYAG	3 cut(s)	678, 825, 1173
BfuAI	ACCTGC	2 cut(s)	818, 832
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	7 cut(s)	353, 407, 486, 585, 659, 1104, 1386
BlsI	GCNGC	7 cut(s)	354, 408, 487, 586, 660, 1105, 1387
BmcAI	AGTACT	1 cut(s)	1163
Bme1390I	CCNGG	1 cut(s)	905
Bme18I	GGWCC	1 cut(s)	1037
BmeRI	GACNNNNNGTC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	772, 1037
BmiI	GGNNCC	1 cut(s)	832
BmrFI	CCNGG	1 cut(s)	905
BmsI	GCATC	2 cut(s)	209, 1208
BpiI	GAAGAC	2 cut(s)	1113, 1252
Bpu14I	TTCGAA	2 cut(s)	48, 263
BsaJI	CCNNGG	3 cut(s)	54, 429, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse118I	RCCGGY	2 cut(s)	324, 860
Bse1I	ACTGG	1 cut(s)	1276
BseBI	CCWGG	1 cut(s)	905
BseDI	CCNNGG	3 cut(s)	54, 429, 903
BseGI	GGATG	5 cut(s)	78, 224, 442, 899, 1166
BseNI	ACTGG	1 cut(s)	1276
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	7 cut(s)	364, 418, 472, 596, 670, 1115, 1397
BseYI	CCCAGC	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	861
BshFI	GGCC	3 cut(s)	71, 773, 1025
BsiEI	CGRYCG	1 cut(s)	861
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	325, 861
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	71, 773, 1025
Bsp119I	TTCGAA	2 cut(s)	48, 263
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	228, 459, 815, 844, 882
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	3 cut(s)	71, 773, 1025
BspLI	GGNNCC	1 cut(s)	832
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	2 cut(s)	818, 832
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	929
BspT104I	TTCGAA	2 cut(s)	48, 263
BsrFI	RCCGGY	2 cut(s)	324, 860
BsrI	ACTGG	1 cut(s)	1276
BssAI	RCCGGY	2 cut(s)	324, 860
BssECI	CCNNGG	3 cut(s)	54, 429, 903
BssMI	GATC	5 cut(s)	228, 459, 815, 844, 882
BssT1I	CCWWGG	2 cut(s)	54, 429
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	5 cut(s)	682, 895, 1119, 1174, 1415
Bst6I	CTCTTC	3 cut(s)	561, 929, 1395
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstBI	TTCGAA	2 cut(s)	48, 263
BstC8I	GCNNGC	2 cut(s)	357, 525
BstDEI	CTNAG	2 cut(s)	312, 528
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	5 cut(s)	78, 224, 442, 899, 1166
BstHHI	GCGC	2 cut(s)	866, 1108
BstKTI	GATC	5 cut(s)	231, 462, 818, 847, 885
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	5 cut(s)	228, 459, 815, 844, 882
BstMCI	CGRYCG	1 cut(s)	861
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 520, 614, 1100, 1391
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	3 cut(s)	678, 825, 1173
BstV1I	GCAGC	7 cut(s)	364, 418, 472, 596, 670, 1115, 1397
BstV2I	GAAGAC	2 cut(s)	1113, 1252
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BsuRI	GGCC	3 cut(s)	71, 773, 1025
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	5 cut(s)	78, 224, 442, 899, 1166
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	5 cut(s)	469, 687, 770, 834, 1170
BveI	ACCTGC	2 cut(s)	818, 832
Cac8I	GCNNGC	2 cut(s)	357, 525
CfoI	GCGC	2 cut(s)	866, 1108
Cfr10I	RCCGGY	2 cut(s)	324, 860
Cfr13I	GGNCC	2 cut(s)	772, 1037
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	1162
CviAII	CATG	8 cut(s)	55, 73, 149, 511, 655, 1061, 1270, 1346
CviQI	GTAC	1 cut(s)	1162
DdeI	CTNAG	2 cut(s)	312, 528
DpnI	GATC	5 cut(s)	230, 461, 817, 846, 884
DpnII	GATC	5 cut(s)	228, 459, 815, 844, 882
DraI	TTTAAA	1 cut(s)	645
DriI	GACNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	69, 1023
Eam1104I	CTCTTC	3 cut(s)	561, 929, 1395
Eam1105I	GACNNNNNGTC	1 cut(s)	281
EarI	CTCTTC	3 cut(s)	561, 929, 1395
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	54, 429
Eco47I	GGWCC	1 cut(s)	1037
Eco57I	CTGAAG	2 cut(s)	722, 947
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	903
EcoT14I	CCWWGG	2 cut(s)	54, 429
ErhI	CCWWGG	2 cut(s)	54, 429
FaeI	CATG	8 cut(s)	58, 76, 152, 514, 658, 1064, 1273, 1349
FalI	AAGNNNNNCTT	2 cut(s)	1355, 1387
FatI	CATG	8 cut(s)	54, 72, 148, 510, 654, 1060, 1269, 1345
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	7 cut(s)	353, 407, 486, 585, 659, 1104, 1386
FokI	GGATG	5 cut(s)	65, 231, 449, 886, 1153
Fsp4HI	GCNGC	7 cut(s)	353, 407, 486, 585, 659, 1104, 1386
FspBI	CTAG	4 cut(s)	395, 1007, 1328, 1407
GlaI	GCGC	2 cut(s)	865, 1107
GluI	GCNGC	7 cut(s)	353, 407, 486, 585, 659, 1104, 1386
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	71, 773, 1025
HapII	CCGG	2 cut(s)	325, 861
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	2 cut(s)	866, 1108
Hin1II	CATG	8 cut(s)	58, 76, 152, 514, 658, 1064, 1273, 1349
Hin6I	GCGC	2 cut(s)	864, 1106
HinP1I	GCGC	2 cut(s)	864, 1106
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	7 cut(s)	50, 123, 166, 271, 276, 532, 1367
HpaII	CCGG	2 cut(s)	325, 861
HphI	GGTGA	3 cut(s)	395, 643, 1403
Hpy166II	GTNNAC	3 cut(s)	469, 651, 916
Hpy188I	TCNGA	7 cut(s)	228, 537, 591, 702, 966, 1089, 1426
Hpy188III	TCNNGA	4 cut(s)	127, 562, 727, 793
Hpy8I	GTNNAC	3 cut(s)	469, 651, 916
HpyAV	CCTTC	2 cut(s)	697, 971
HpyCH4III	ACNGT	5 cut(s)	682, 895, 1119, 1174, 1415
HpyCH4V	TGCA	8 cut(s)	406, 488, 523, 658, 827, 1103, 1142, 1273
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 520, 614, 1100, 1391
HpyF3I	CTNAG	2 cut(s)	312, 528
Hsp92II	CATG	8 cut(s)	58, 76, 152, 514, 658, 1064, 1273, 1349
HspAI	GCGC	2 cut(s)	864, 1106
Kzo9I	GATC	5 cut(s)	228, 459, 815, 844, 882
LguI	GCTCTTC	1 cut(s)	929
LmnI	GCTCC	2 cut(s)	253, 1391
Lsp1109I	GCAGC	7 cut(s)	364, 418, 472, 596, 670, 1115, 1397
LweI	GCATC	2 cut(s)	209, 1208
MaeI	CTAG	4 cut(s)	395, 1007, 1328, 1407
MaeIII	GTNAC	4 cut(s)	212, 889, 1352, 1409
MalI	GATC	5 cut(s)	230, 461, 817, 846, 884
MboI	GATC	5 cut(s)	228, 459, 815, 844, 882
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	2 cut(s)	71, 1025
MluCI	AATT	9 cut(s)	138, 265, 411, 443, 759, 852, 1149, 1234, 1331
MluNI	TGGCCA	2 cut(s)	71, 1025
MlyI	GAGTC	2 cut(s)	160, 270
MnlI	CCTC	9 cut(s)	19, 97, 264, 290, 380, 475, 564, 763, 1396
Mox20I	TGGCCA	2 cut(s)	71, 1025
MscI	TGGCCA	2 cut(s)	71, 1025
MseI	TTAA	3 cut(s)	633, 644, 669
MslI	CAYNNNNRTG	1 cut(s)	1268
Msp20I	TGGCCA	2 cut(s)	71, 1025
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	2 cut(s)	325, 861
MspR9I	CCNGG	1 cut(s)	905
MvaI	CCWGG	1 cut(s)	905
MwoI	GCNNNNNNNGC	5 cut(s)	149, 520, 614, 1100, 1391
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	5 cut(s)	228, 459, 815, 844, 882
NlaIII	CATG	8 cut(s)	58, 76, 152, 514, 658, 1064, 1273, 1349
NlaIV	GGNNCC	1 cut(s)	832
NmuCI	GTSAC	2 cut(s)	1352, 1409
NspI	RCATGY	1 cut(s)	152
NspV	TTCGAA	2 cut(s)	48, 263
PciSI	GCTCTTC	1 cut(s)	929
PfeI	GAWTC	5 cut(s)	50, 123, 271, 532, 1367
PkrI	GCNGC	7 cut(s)	354, 408, 487, 586, 660, 1105, 1387
PleI	GAGTC	2 cut(s)	160, 270
PpsI	GAGTC	2 cut(s)	160, 270
PshBI	ATTAAT	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	1376
Psp6I	CCWGG	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	1 cut(s)	832
PspPI	GGNCC	2 cut(s)	772, 1037
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	1 cut(s)	1163
RsaNI	GTAC	1 cut(s)	1162
RseI	CAYNNNNRTG	1 cut(s)	1268
SapI	GCTCTTC	1 cut(s)	929
SaqAI	TTAA	3 cut(s)	633, 644, 669
SatI	GCNGC	7 cut(s)	353, 407, 486, 585, 659, 1104, 1386
Sau3AI	GATC	5 cut(s)	228, 459, 815, 844, 882
Sau96I	GGNCC	2 cut(s)	772, 1037
SbfI	CCTGCAGG	1 cut(s)	829
ScaI	AGTACT	1 cut(s)	1163
SchI	GAGTC	2 cut(s)	160, 270
ScrFI	CCNGG	1 cut(s)	905
SdaI	CCTGCAGG	1 cut(s)	829
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	209, 1208
SfcI	CTRYAG	3 cut(s)	678, 825, 1173
SfuI	TTCGAA	2 cut(s)	48, 263
SinI	GGWCC	1 cut(s)	1037
SmiMI	CAYNNNNRTG	1 cut(s)	1268
Sse8387I	CCTGCAGG	1 cut(s)	829
Sse9I	AATT	9 cut(s)	138, 265, 411, 443, 759, 852, 1149, 1234, 1331
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	4 cut(s)	395, 1007, 1328, 1407
StyD4I	CCNGG	1 cut(s)	903
StyI	CCWWGG	2 cut(s)	54, 429
TaaI	ACNGT	5 cut(s)	682, 895, 1119, 1174, 1415
TaqI	TCGA	8 cut(s)	48, 126, 263, 269, 274, 285, 563, 857
TasI	AATT	9 cut(s)	138, 265, 411, 443, 759, 852, 1149, 1234, 1331
TatI	WGTACW	1 cut(s)	1161
TfiI	GAWTC	5 cut(s)	50, 123, 271, 532, 1367
Tru1I	TTAA	3 cut(s)	633, 644, 669
Tru9I	TTAA	3 cut(s)	633, 644, 669
TscAI	CASTG	5 cut(s)	469, 687, 770, 841, 1177
TseFI	GTSAC	2 cut(s)	1352, 1409
TseI	GCWGC	7 cut(s)	352, 406, 485, 584, 658, 1103, 1385
Tsp45I	GTSAC	2 cut(s)	1352, 1409
TspDTI	ATGAA	5 cut(s)	755, 1049, 1247, 1252, 1323
TspGWI	ACGGA	2 cut(s)	231, 494
TspRI	CASTG	5 cut(s)	469, 687, 770, 841, 1177
VpaK11BI	GGWCC	1 cut(s)	1037
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	3 cut(s)	265, 443, 1234
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	915
XspI	CTAG	4 cut(s)	395, 1007, 1328, 1407
ZrmI	AGTACT	1 cut(s)	1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.