AT2G43320

Histidine protein methyltransferase 1 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17996650 .. 18000027
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43320.1

Sequence Viewer

Length: 1056 bp
ATGCGTGCACCATCTTTGCTTGCACAATGCTTGCCGGGTTTGCTGCCTCAAGACCGAGGCGGTGTGTCTGCATTATCAGAGAAGGATTTGCAGCTTCCAACACCAGCTGTTGAGATCATACCTTCTAAGACAGTAGCTCATCACAGGTATTCAGGGGAGAATCTAGATGCGCTCGGTTTACAAGTTTTCAAGGGAAAAGTAAGTGTTGCTGATATCATTGGGCTCTCTGGGTCAGAAACTGCTCCTTTAAAAAATGAAGGTTCTTTGAAAAGTTGGGAAAGCTCTGTTGTTCTTGTTAATGTCCTTAAAAACGAGATCCGTGATGGACAGCTTAGCTTCAGGGGCAAAAGGGTCCTCGAGCTAGGTTGCAACTTTGGAGTTCCTGGGATATTTGCCTGTTTGAAAGGTGCTTCCTCAGTCCACTTTCAAGACCTCAGCGCAGAAACGATAAGATGCACAACCATCCCAAACGTTCTTGCAAACCTGGAGCAAGCACGAGACAGGCAAAGCCGTCAGCCAGAAAGCCCACTCACACCATCAAGACAAGCTATCTCTGCATCTGTCCGTTTCTATGCAGGAGAATGGGAAGAGCTCTCTACCGTTCTATCCATCATTAGAACAGATGTCCTTGAACCATCTATCCCCGCAATGAACTTGAGCTTTTCAGAGGAAGATTTCATGGATGGATGTAGCAGCCAAGACGGAAGCATTACAGGACAGCCAGATTTCTCCTCGAGGCGATCAAGGAAGCTCTCAGGAAGCAGAGCGTGGGAAAGAGCCAACGAGACTGGTCAAGAAGGAGAATATGGATATGATGTTATACTAATGACCGAAATCCCTTACTCTATTACTTCTCTGAAGAAACTATATTCTCTCATAAAGAAGTGCCTGAGACCGCCATACGGTGTAATGTATTTGGCGGCGAAGAAGCAATACGTAGGATTCAACAGTGGAGCGAAACATTTGAGGAACTTGGTGGATGAAGAAACTATCTTAGGAGCTCATTTGGTGAAGGAAACTACAGACAGAGATATTTGGAAGTTCTTCCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

38.63

Weight (kDa)

6.97

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 733
AciI CCGC 4 cut(s) 60, 645, 896, 920
AclI AACGTT 1 cut(s) 471
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 2 cut(s) 322, 878
AfiI CCNNNNNNNGG 1 cut(s) 902
AgsI TTSAA 6 cut(s) 190, 268, 403, 428, 632, 946
AjnI CCWGG 2 cut(s) 382, 483
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
Alw21I GWGCWC 3 cut(s) 10, 594, 1003
Alw26I GTCTC 3 cut(s) 492, 779, 886
Alw44I GTGCAC 1 cut(s) 6
AlwI GGATC 1 cut(s) 310
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 2 cut(s) 356, 733
ApaLI GTGCAC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 43, 91, 693
Asp700I GAANNNNTTC 1 cut(s) 1043
AspLEI GCGC 2 cut(s) 172, 440
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 1021
AvaI CYCGRG 2 cut(s) 356, 733
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 10
BanII GRGCYC 3 cut(s) 225, 594, 1003
BarI GAAGNNNNNNTAC 2 cut(s) 917, 949
BauI CACGAG 1 cut(s) 495
Bbv12I GWGCWC 3 cut(s) 10, 594, 1003
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 30, 103, 705
BccI CCATC 7 cut(s) 19, 317, 470, 544, 617, 643, 677
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 2 cut(s) 384, 485
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 3 cut(s) 492, 779, 886
BfaI CTAG 2 cut(s) 164, 362
BfmI CTRYAG 1 cut(s) 1020
BisI GCNGC 4 cut(s) 44, 92, 694, 921
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 4 cut(s) 45, 93, 695, 922
Bme1390I CCNGG 3 cut(s) 36, 384, 485
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 2 cut(s) 356, 733
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 3 cut(s) 36, 384, 485
BmsI GCATC 3 cut(s) 157, 443, 566
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 3 cut(s) 33, 676, 1034
BpuMI CCSGG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 937
BsaI GGTCTC 1 cut(s) 886
BsaJI CCNNGG 2 cut(s) 55, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 902
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 654
BseBI CCWGG 2 cut(s) 384, 485
BseDI CCNNGG 2 cut(s) 55, 383
BseGI GGATG 4 cut(s) 462, 688, 692, 985
BseLI CCNNNNNNNGG 1 cut(s) 902
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 4 cut(s) 429, 448, 768, 881
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 1 cut(s) 721
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 3 cut(s) 30, 103, 705
BsiHKAI GWGCWC 3 cut(s) 10, 594, 1003
BsiHKCI CYCGRG 2 cut(s) 356, 733
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 902
BsmAI GTCTC 3 cut(s) 492, 779, 886
Bso31I GGTCTC 1 cut(s) 886
BsoBI CYCGRG 2 cut(s) 356, 733
Bsp1286I GDGCHC 4 cut(s) 10, 225, 594, 1003
Bsp143I GATC 3 cut(s) 114, 315, 740
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 4 cut(s) 60, 645, 896, 920
BspCNI CTCAG 4 cut(s) 428, 447, 767, 882
BspLI GGNNCC 1 cut(s) 353
BspPI GGATC 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 582
BspTNI GGTCTC 1 cut(s) 886
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 2 cut(s) 55, 383
BssMI GATC 3 cut(s) 114, 315, 740
BssSI CACGAG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 384, 485
Bst4CI ACNGT 4 cut(s) 133, 601, 905, 950
Bst6I CTCTTC 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 937
BstC8I GCNNGC 4 cut(s) 6, 21, 32, 492
BstDEI CTNAG 7 cut(s) 126, 332, 415, 434, 754, 890, 994
BstF5I GGATG 4 cut(s) 462, 688, 692, 985
BstHHI GCGC 2 cut(s) 172, 440
BstKTI GATC 3 cut(s) 117, 318, 743
BstMAI GTCTC 3 cut(s) 492, 779, 886
BstMBI GATC 3 cut(s) 114, 315, 740
BstMWI GCNNNNNNNGC 3 cut(s) 40, 342, 554
BstNI CCWGG 2 cut(s) 384, 485
BstSCI CCNGG 3 cut(s) 34, 382, 483
BstSFI CTRYAG 1 cut(s) 1020
BstSLI GKGCMC 1 cut(s) 10
BstSNI TACGTA 1 cut(s) 937
BstV1I GCAGC 3 cut(s) 30, 103, 705
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BtsCI GGATG 4 cut(s) 462, 688, 692, 985
BtsIMutI CAGTG 1 cut(s) 955
Cac8I GCNNGC 4 cut(s) 6, 21, 32, 492
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 2 cut(s) 172, 440
Cfr13I GGNCC 1 cut(s) 352
CviAII CATG 1 cut(s) 679
DdeI CTNAG 7 cut(s) 126, 332, 415, 434, 754, 890, 994
DpnI GATC 3 cut(s) 116, 317, 742
DpnII GATC 3 cut(s) 114, 315, 740
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 2 cut(s) 592, 1001
Eco105I TACGTA 1 cut(s) 937
Eco24I GRGCYC 3 cut(s) 225, 594, 1003
Eco31I GGTCTC 1 cut(s) 886
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 2 cut(s) 592, 1001
Eco57I CTGAAG 2 cut(s) 322, 878
Eco88I CYCGRG 2 cut(s) 356, 733
EcoICRI GAGCTC 2 cut(s) 592, 1001
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 382, 483
EcoRV GATATC 1 cut(s) 214
EcoT38I GRGCYC 3 cut(s) 225, 594, 1003
FaeI CATG 1 cut(s) 682
FaiI YATR 9 cut(s) 119, 573, 680, 807, 813, 821, 868, 878, 901
FatI CATG 1 cut(s) 678
FauI CCCGC 1 cut(s) 652
Fnu4HI GCNGC 4 cut(s) 44, 92, 694, 921
FokI GGATG 4 cut(s) 449, 695, 699, 992
FriOI GRGCYC 3 cut(s) 225, 594, 1003
Fsp4HI GCNGC 4 cut(s) 44, 92, 694, 921
FspBI CTAG 2 cut(s) 164, 362
GlaI GCGC 2 cut(s) 171, 439
GluI GCNGC 4 cut(s) 44, 92, 694, 921
GsuI CTGGAG 1 cut(s) 506
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 172, 440
Hin1II CATG 1 cut(s) 682
Hin6I GCGC 2 cut(s) 170, 438
HinP1I GCGC 2 cut(s) 170, 438
HinfI GANTC 2 cut(s) 160, 942
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 1021
Hpy166II GTNNAC 3 cut(s) 8, 179, 421
Hpy188I TCNGA 4 cut(s) 79, 235, 667, 858
Hpy188III TCNNGA 6 cut(s) 50, 164, 428, 540, 756, 794
Hpy8I GTNNAC 3 cut(s) 8, 179, 421
HpyAV CCTTC 5 cut(s) 76, 132, 251, 791, 1006
HpyCH4III ACNGT 4 cut(s) 133, 601, 905, 950
HpyCH4IV ACGT 2 cut(s) 471, 936
HpyCH4V TGCA 9 cut(s) 8, 23, 71, 91, 369, 456, 479, 557, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 342, 554
HpyF3I CTNAG 7 cut(s) 126, 332, 415, 434, 754, 890, 994
HpySE526I ACGT 2 cut(s) 471, 936
Hsp92II CATG 1 cut(s) 682
HspAI GCGC 2 cut(s) 170, 438
Kzo9I GATC 3 cut(s) 114, 315, 740
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 4 cut(s) 247, 487, 953, 998
Lsp1109I GCAGC 3 cut(s) 30, 103, 705
LweI GCATC 3 cut(s) 157, 443, 566
MaeI CTAG 2 cut(s) 164, 362
MaeII ACGT 2 cut(s) 471, 936
MalI GATC 3 cut(s) 116, 317, 742
MboI GATC 3 cut(s) 114, 315, 740
MboII GAAGA 6 cut(s) 599, 683, 871, 937, 995, 1036
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 4 cut(s) 10, 225, 594, 1003
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 9 cut(s) 50, 57, 365, 424, 443, 661, 729, 742, 960
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 3 cut(s) 248, 297, 306
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 36, 384, 485
MvaI CCWGG 2 cut(s) 384, 485
MwoI GCNNNNNNNGC 3 cut(s) 40, 342, 554
NciI CCSGG 1 cut(s) 36
NdeII GATC 3 cut(s) 114, 315, 740
NlaIII CATG 1 cut(s) 682
NlaIV GGNNCC 1 cut(s) 353
PaeR7I CTCGAG 2 cut(s) 356, 733
PciSI GCTCTTC 1 cut(s) 582
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 2 cut(s) 160, 942
PkrI GCNGC 4 cut(s) 45, 93, 695, 922
Ppu21I YACGTR 1 cut(s) 937
PpuMI RGGWCCY 1 cut(s) 352
Psp124BI GAGCTC 2 cut(s) 594, 1003
Psp1406I AACGTT 1 cut(s) 471
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 382, 483
PspGI CCWGG 2 cut(s) 382, 483
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PspXI VCTCGAGB 2 cut(s) 356, 733
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 107
SacI GAGCTC 2 cut(s) 594, 1003
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 248, 297, 306
SatI GCNGC 4 cut(s) 44, 92, 694, 921
Sau3AI GATC 3 cut(s) 114, 315, 740
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 3 cut(s) 36, 384, 485
SduI GDGCHC 4 cut(s) 10, 225, 594, 1003
SfaNI GCATC 3 cut(s) 157, 443, 566
SfcI CTRYAG 1 cut(s) 1020
Sfr274I CTCGAG 2 cut(s) 356, 733
SinI GGWCC 1 cut(s) 352
SlaI CTCGAG 2 cut(s) 356, 733
SmlI CTYRAG 5 cut(s) 48, 356, 655, 733, 1049
SmoI CTYRAG 5 cut(s) 48, 356, 655, 733, 1049
SnaBI TACGTA 1 cut(s) 937
SsiI CCGC 4 cut(s) 60, 645, 896, 920
SspMI CTAG 2 cut(s) 164, 362
SstI GAGCTC 2 cut(s) 594, 1003
StyD4I CCNGG 3 cut(s) 34, 382, 483
TaaI ACNGT 4 cut(s) 133, 601, 905, 950
TaiI ACGT 2 cut(s) 474, 939
TaqI TCGA 2 cut(s) 357, 734
TaqII GACCGA 2 cut(s) 69, 845
TauI GCSGC 1 cut(s) 923
TfiI GAWTC 2 cut(s) 160, 942
Tru1I TTAA 3 cut(s) 248, 297, 306
Tru9I TTAA 3 cut(s) 248, 297, 306
TscAI CASTG 1 cut(s) 955
TseI GCWGC 3 cut(s) 43, 91, 693
TspDTI ATGAA 4 cut(s) 270, 665, 667, 996
TspGWI ACGGA 3 cut(s) 308, 554, 717
TspRI CASTG 1 cut(s) 955
VneI GTGCAC 1 cut(s) 6
VpaK11BI GGWCC 1 cut(s) 352
XbaI TCTAGA 1 cut(s) 163
XhoI CTCGAG 2 cut(s) 356, 733
XmnI GAANNNNTTC 1 cut(s) 1043
XspI CTAG 2 cut(s) 164, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.