Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2977392 .. 2980304

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03270.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCGTGCACCATCATTGCTTGCACAATGTTTGCCCGGCTTGGTGCCTCAAGACAAAGGAAGTAATAGTGTGTCCTCTATTTCGGAGAGGGATTCGCACCTCCCTTCACCAGCTGTTGAGATTATCCCTTCGAAGACAGCTCACCCATACAAGTATGCTGGTGAGAATATTGACTTGCAAGGACTCAATGTCTTCAAGGGAAGAGTTAGTGTTTCTGATATCATCGGCTTCAATGGTTCAGAGATGATATCCATAAAACCAGATGGGCATCTGAAATCTTGGGATAGCTCCATTGAGCTTGTTAATGGCCTTAAACATGATATTCGAGATGGGCAACTGAGCTTTCGAGGAAAAAGGGTGCTTGAGTTGGGTTGCAGCTATGGCCTACCGGGGATTTTTGCATGCCTAAAGGGAGCTTCCACGGTGCACTTTCAAGACCTGAATGCAGAAACCATTAGATGCACAACTATACCAAATGTCCTAGCCAATCTTGAGCAGGCTCGAGACAGGCAGAGCCGACAGACAGAAAGCCCTCTGACTCCATCAAGACAAACTGTGACCCAGTCGGTGCACTTTTATGCTGGTGACTGGGAAGAACTTCCCACAGTCTTGTCTATTGTAAGGAATGACGGTGAAGCATCAACAGGAATGAATCTCAGCTTCTCTGAGGAGGATTTTATGGATGGATGTAGCAGCCAAGACGGTAGCATCTTGGCACGAGAATCCTCCTCAAGGCGATCGAGGAAGCTTTCAGGAAGCCGGGCATGGGAGAGGGCTAGCGAGACAGAACAAGGAGGCGGATATGATATTATCTTGCTGACAGAGATCCCATATTCTTTGACCTCGTTGAAGAAACTTTATGCGCTCATAAAAAAGTGTTTGAGGCCCCCGTATGGAGTGCTGTACTTGGCTACAAAAAAGAACTACGTTGGCTTCAACAGCGGAGCTCGGCATCTTAGAAACCTGGTTGATGAAGAAGGCATTTTCGGAGCCCATCTAGTGAAGGAGATGGCTGATAGAGATGTATGGAAGTTTTTTTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

349

Amino Acids

38.39

Weight (kDa)

7.08

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	2 cut(s)	798, 942
AclWI	GGATC	1 cut(s)	820
AfaI	GTAC	1 cut(s)	905
AfiI	CCNNNNNNNGG	3 cut(s)	732, 766, 893
AgsI	TTSAA	5 cut(s)	196, 232, 434, 850, 937
AhdI	GACNNNNNGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	963
Alw21I	GWGCWC	4 cut(s)	10, 429, 573, 949
Alw26I	GTCTC	2 cut(s)	498, 776
Alw44I	GTGCAC	3 cut(s)	6, 425, 569
AlwI	GGATC	1 cut(s)	820
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	3 cut(s)	307, 382, 884
ApaLI	GTGCAC	3 cut(s)	6, 425, 569
ApeKI	GCWGC	2 cut(s)	375, 693
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	1 cut(s)	885
AsuC2I	CCSGG	3 cut(s)	36, 390, 761
AsuHPI	GGTGA	5 cut(s)	99, 134, 173, 596, 644
AsuII	TTCGAA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	501
BaeGI	GKGCMC	3 cut(s)	10, 429, 573
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	949, 994
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	2 cut(s)	140, 184
Bbv12I	GWGCWC	4 cut(s)	10, 429, 573, 949
BbvI	GCAGC	2 cut(s)	387, 705
BccI	CCATC	7 cut(s)	19, 257, 323, 550, 677, 1002, 1003
BciT130I	CCWGG	1 cut(s)	965
BcnI	CCSGG	3 cut(s)	36, 390, 761
BcoDI	GTCTC	2 cut(s)	498, 776
BfaI	CTAG	3 cut(s)	482, 777, 998
BisI	GCNGC	2 cut(s)	376, 694
BlsI	GCNGC	2 cut(s)	377, 695
Bme1390I	CCNGG	4 cut(s)	36, 390, 761, 965
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	885
BmiI	GGNNCC	3 cut(s)	45, 887, 991
BmrFI	CCNGG	4 cut(s)	36, 390, 761, 965
BmrI	ACTGGG	2 cut(s)	556, 598
BmsI	GCATC	5 cut(s)	277, 449, 647, 717, 961
BmtI	GCTAGC	1 cut(s)	780
BmuI	ACTGGG	2 cut(s)	556, 598
BpiI	GAAGAC	2 cut(s)	140, 184
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	4 cut(s)	33, 383, 512, 715
BpuMI	CCSGG	3 cut(s)	36, 390, 761
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	389, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	732, 766, 893
Bse1I	ACTGG	2 cut(s)	562, 593
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	965
BseDI	CCNNGG	2 cut(s)	389, 420
BseGI	GGATG	2 cut(s)	688, 692
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	732, 766, 893
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	329, 657, 670
BseNI	ACTGG	2 cut(s)	562, 593
BseRI	GAGGAG	2 cut(s)	683, 718
BseSI	GKGCMC	3 cut(s)	10, 429, 573
BseXI	GCAGC	2 cut(s)	387, 705
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	309, 384, 886
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	740
BsiHKAI	GWGCWC	4 cut(s)	10, 429, 573, 949
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	3 cut(s)	36, 389, 760
BslI	CCNNNNNNNGG	3 cut(s)	732, 766, 893
BsmAI	GTCTC	2 cut(s)	498, 776
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	309, 384, 886
BsoBI	CYCGRG	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	5 cut(s)	10, 429, 573, 949, 994
Bsp143I	GATC	2 cut(s)	737, 825
BspACI	CCGC	2 cut(s)	798, 942
BspANI	GGCC	3 cut(s)	309, 384, 886
BspCNI	CTCAG	3 cut(s)	330, 658, 669
BspLI	GGNNCC	3 cut(s)	45, 887, 991
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	562, 593
BssECI	CCNNGG	2 cut(s)	389, 420
BssMI	GATC	2 cut(s)	737, 825
BssSI	CACGAG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	965
Bst4CI	ACNGT	5 cut(s)	424, 556, 607, 632, 704
Bst6I	CTCTTC	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	5 cut(s)	6, 21, 403, 498, 778
BstDEI	CTNAG	4 cut(s)	338, 656, 666, 956
BstDSI	CCRYGG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	730
BstF5I	GGATG	2 cut(s)	688, 692
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	2 cut(s)	740, 828
BstMAI	GTCTC	2 cut(s)	498, 776
BstMBI	GATC	2 cut(s)	737, 825
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 939
BstNI	CCWGG	1 cut(s)	965
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	4 cut(s)	34, 388, 759, 963
BstSLI	GKGCMC	3 cut(s)	10, 429, 573
BstV1I	GCAGC	2 cut(s)	387, 705
BstV2I	GAAGAC	2 cut(s)	140, 184
BstX2I	RGATCY	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	309, 384, 886
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	688, 692
Cac8I	GCNNGC	5 cut(s)	6, 21, 403, 498, 778
CfoI	GCGC	1 cut(s)	865
Cfr13I	GGNCC	1 cut(s)	885
CsiI	ACCWGGT	1 cut(s)	963
Csp6I	GTAC	1 cut(s)	904
CviAII	CATG	3 cut(s)	317, 402, 765
CviQI	GTAC	1 cut(s)	904
DdeI	CTNAG	4 cut(s)	338, 656, 666, 956
DpnI	GATC	2 cut(s)	739, 827
DpnII	GATC	2 cut(s)	737, 825
DriI	GACNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	196
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	947
Eco24I	GRGCYC	2 cut(s)	949, 994
Eco32I	GATATC	2 cut(s)	220, 249
Eco53kI	GAGCTC	1 cut(s)	947
Eco88I	CYCGRG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	885
EcoRII	CCWGG	1 cut(s)	963
EcoRV	GATATC	2 cut(s)	220, 249
EcoT38I	GRGCYC	2 cut(s)	949, 994
FaeI	CATG	3 cut(s)	320, 405, 768
FatI	CATG	3 cut(s)	316, 401, 764
Fnu4HI	GCNGC	2 cut(s)	376, 694
FokI	GGATG	2 cut(s)	695, 699
FriOI	GRGCYC	2 cut(s)	949, 994
Fsp4HI	GCNGC	2 cut(s)	376, 694
FspBI	CTAG	3 cut(s)	482, 777, 998
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	2 cut(s)	376, 694
HaeIII	GGCC	3 cut(s)	309, 384, 886
HapII	CCGG	3 cut(s)	36, 389, 760
HhaI	GCGC	1 cut(s)	865
Hin1II	CATG	3 cut(s)	320, 405, 768
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	5 cut(s)	92, 183, 538, 652, 722
HpaII	CCGG	3 cut(s)	36, 389, 760
HphI	GGTGA	5 cut(s)	99, 134, 173, 596, 644
Hpy166II	GTNNAC	3 cut(s)	8, 427, 571
Hpy188I	TCNGA	7 cut(s)	85, 217, 241, 273, 537, 667, 989
Hpy188III	TCNNGA	7 cut(s)	50, 326, 434, 491, 503, 546, 753
Hpy8I	GTNNAC	3 cut(s)	8, 427, 571
HpyAV	CCTTC	4 cut(s)	114, 138, 971, 997
HpyCH4III	ACNGT	5 cut(s)	424, 556, 607, 632, 704
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	9 cut(s)	8, 23, 178, 375, 401, 427, 446, 462, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 939
HpyF3I	CTNAG	4 cut(s)	338, 656, 666, 956
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	3 cut(s)	320, 405, 768
HspAI	GCGC	1 cut(s)	863
Kzo9I	GATC	2 cut(s)	737, 825
LmnI	GCTCC	4 cut(s)	293, 413, 944, 989
Lsp1109I	GCAGC	2 cut(s)	387, 705
LweI	GCATC	5 cut(s)	277, 449, 647, 717, 961
MabI	ACCWGGT	1 cut(s)	963
MaeI	CTAG	3 cut(s)	482, 777, 998
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	2 cut(s)	556, 584
MalI	GATC	2 cut(s)	739, 827
MboI	GATC	2 cut(s)	737, 825
MboII	GAAGA	6 cut(s)	145, 184, 213, 605, 862, 986
MflI	RGATCY	1 cut(s)	825
MhlI	GDGCHC	5 cut(s)	10, 429, 573, 949, 994
MlyI	GAGTC	2 cut(s)	177, 532
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	2 cut(s)	303, 312
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	2 cut(s)	113, 942
MspI	CCGG	3 cut(s)	36, 389, 760
MspR9I	CCNGG	4 cut(s)	36, 390, 761, 965
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	965
MwoI	GCNNNNNNNGC	2 cut(s)	381, 939
NciI	CCSGG	3 cut(s)	36, 390, 761
NdeII	GATC	2 cut(s)	737, 825
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	3 cut(s)	320, 405, 768
NlaIV	GGNNCC	3 cut(s)	45, 887, 991
NmeAIII	GCCGAG	1 cut(s)	928
NmuCI	GTSAC	2 cut(s)	556, 584
NspI	RCATGY	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	501
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	92, 652, 722
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	377, 695
Ple19I	CGATCG	1 cut(s)	740
PleI	GAGTC	2 cut(s)	177, 532
PpsI	GAGTC	2 cut(s)	177, 532
Psp124BI	GAGCTC	1 cut(s)	949
Psp6I	CCWGG	1 cut(s)	963
PspGI	CCWGG	1 cut(s)	963
PspN4I	GGNNCC	3 cut(s)	45, 887, 991
PspPI	GGNCC	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	825
PsyI	GACNNNGTC	1 cut(s)	562
PvuI	CGATCG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	905
RsaNI	GTAC	1 cut(s)	904
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	949
SaqAI	TTAA	2 cut(s)	303, 312
SatI	GCNGC	2 cut(s)	376, 694
Sau3AI	GATC	2 cut(s)	737, 825
Sau96I	GGNCC	1 cut(s)	885
SchI	GAGTC	2 cut(s)	177, 532
ScrFI	CCNGG	4 cut(s)	36, 390, 761, 965
SduI	GDGCHC	5 cut(s)	10, 429, 573, 949, 994
SexAI	ACCWGGT	1 cut(s)	963
SfaNI	GCATC	5 cut(s)	277, 449, 647, 717, 961
Sfr274I	CTCGAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	5 cut(s)	48, 362, 491, 501, 730
SmoI	CTYRAG	5 cut(s)	48, 362, 491, 501, 730
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	2 cut(s)	798, 942
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	3 cut(s)	482, 777, 998
SstI	GAGCTC	1 cut(s)	949
StyD4I	CCNGG	4 cut(s)	34, 388, 759, 963
TaaI	ACNGT	5 cut(s)	424, 556, 607, 632, 704
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	5 cut(s)	131, 325, 346, 502, 740
TatI	WGTACW	1 cut(s)	903
TfiI	GAWTC	3 cut(s)	92, 652, 722
Tru1I	TTAA	2 cut(s)	303, 312
Tru9I	TTAA	2 cut(s)	303, 312
TseFI	GTSAC	2 cut(s)	556, 584
TseI	GCWGC	2 cut(s)	375, 693
Tsp45I	GTSAC	2 cut(s)	556, 584
TspDTI	ATGAA	2 cut(s)	665, 987
Tth111I	GACNNNGTC	1 cut(s)	562
VneI	GTGCAC	3 cut(s)	6, 425, 569
XagI	CCTNNNNNAGG	1 cut(s)	730
XceI	RCATGY	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	482, 777, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.