Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Reverse (-)

36002018 .. 36004798

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCGCGCACCATCATTGCTTGCACAGTGCTTGCCGGGTTTGGTGCCTCATGACAAAACAAGTCACAGCTTGTCCTCTATTTCCGAGAGAGAATCACATCTCCCTTCACCAGCTGTTGAGATTCTCCCTTCCAAGTCCGCTCACCCATACAAGTATGCTGGTGAGAATATTGACTTGCAAGGACTCAATGCGTCAAAGGGAAGAGTTAGTGTTGCTGATATCATCGGCTTCAATGGTTCAGAAATGATATCTTCAAAACCAGATGGGTATCTAAAATCTTGGGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCGAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTGAGCTTGGTTGCAGCTATGGGCTTCCAGGAATTTTTGCTTGTCTGAAGGGAGCAGGCAGAGTGCACTTTCAAGACCTCAGTGCAGAAAGTATTAGATGCACAACAATACCAAATGTCCTTGCCAATCTTGAGCAAGCTCGAGATAGGCAGAGCCGACAGCCAGAGAGCCCCCTGACTCCGTCAAGACAAACTGTGACCCAGTCGGTGCACTTTTATGCCGGTGACTGGGAAGAGCTTCCCACTGTCTTGTCTGTTGTGAGGAATGATGGGTTTGAAGTGACAGCAGGAATGAACCTGAGCTTCTCTGAGGAAGATTTTATGGAGGGTTGTAGCAGCCAAGATGGAAGCATCTTGGGACAAGAATCTTCCTCAAGGCGATCAAGGAAGCTTTCAGGAAGTCGGGCCTGGGAGAGAGCGAGTGAGACCGAACAAGGAGAAGGTGGATATGATATTATCTTGATGACCGAGATCCCATATTCATTAACCTCATTGAAAAAGCTTTATGCACTCATAAAAAAGTGTTCAAGGCCACCATATGGTGTTGTATACTTGGCCACAAAAAGGAATTATGTTGGCTTTAACGGCGGTGCTCGGCACCTGAAAAGCCTGGTAGATGAAGAGGGAATTTTTGGTGCTCATCTAGTGAAGGAAATGGCGGACAGAGATGTATGGAAATTTTTTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

351

Amino Acids

38.59

Weight (kDa)

6.77

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 957
AccB7I	CCANNNNNTGG	1 cut(s)	899
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	909
AccII	CGCG	1 cut(s)	6
AciI	CCGC	3 cut(s)	138, 948, 1019
AclWI	GGATC	1 cut(s)	826
AcoI	YGGCCR	1 cut(s)	915
AcsI	RAATTY	3 cut(s)	393, 987, 1037
AcuI	CTGAAG	2 cut(s)	332, 428
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	588, 899, 924
AgsI	TTSAA	6 cut(s)	232, 255, 434, 638, 856, 888
AjnI	CCWGG	3 cut(s)	388, 767, 969
Alw21I	GWGCWC	4 cut(s)	429, 573, 955, 1000
Alw26I	GTCTC	1 cut(s)	779
Alw44I	GTGCAC	2 cut(s)	425, 569
AlwI	GGATC	1 cut(s)	826
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	3 cut(s)	765, 890, 915
ApaLI	GTGCAC	2 cut(s)	425, 569
ApeKI	GCWGC	2 cut(s)	375, 696
ApoI	RAATTY	3 cut(s)	393, 987, 1037
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	1 cut(s)	765
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	4 cut(s)	99, 134, 173, 596
AvaI	CYCGRG	1 cut(s)	501
BaeGI	GKGCMC	2 cut(s)	429, 573
BalI	TGGCCA	1 cut(s)	917
BanI	GGYRCC	2 cut(s)	43, 957
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	4 cut(s)	429, 573, 955, 1000
BbvI	GCAGC	2 cut(s)	387, 708
BccI	CCATC	5 cut(s)	19, 257, 323, 623, 698
BceAI	ACGGC	1 cut(s)	961
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	3 cut(s)	390, 769, 971
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	1 cut(s)	1004
BisI	GCNGC	2 cut(s)	376, 697
BlsI	GCNGC	2 cut(s)	377, 698
Bme1390I	CCNGG	4 cut(s)	36, 390, 769, 971
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	765
BmiI	GGNNCC	2 cut(s)	45, 959
BmrFI	CCNGG	4 cut(s)	36, 390, 769, 971
BmrI	ACTGGG	2 cut(s)	556, 598
BmsI	GCATC	2 cut(s)	449, 720
BmuI	ACTGGG	2 cut(s)	556, 598
Bpu10I	CCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	3 cut(s)	383, 512, 718
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	3 cut(s)	588, 899, 924
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	2 cut(s)	562, 593
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	390, 769, 971
BseDI	CCNNGG	1 cut(s)	768
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	588, 899, 924
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	329, 454, 650, 660
BseNI	ACTGG	2 cut(s)	562, 593
BsePI	GCGCGC	1 cut(s)	4
BseSI	GKGCMC	2 cut(s)	429, 573
BseXI	GCAGC	2 cut(s)	387, 708
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	767, 892, 917
BshNI	GGYRCC	2 cut(s)	43, 957
BsiHKAI	GWGCWC	4 cut(s)	429, 573, 955, 1000
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	35, 582
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	3 cut(s)	588, 899, 924
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	767, 892, 917
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	5 cut(s)	429, 533, 573, 955, 1000
Bsp143I	GATC	3 cut(s)	295, 740, 831
BspACI	CCGC	3 cut(s)	138, 948, 1019
BspANI	GGCC	3 cut(s)	767, 892, 917
BspCNI	CTCAG	4 cut(s)	330, 453, 651, 661
BspFNI	CGCG	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	45, 959
BspPI	GGATC	1 cut(s)	826
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	2 cut(s)	43, 957
BspTNI	GGTCTC	1 cut(s)	779
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	562, 593
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	768
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	3 cut(s)	295, 740, 831
BssNAI	GTATAC	1 cut(s)	910
Bst1107I	GTATAC	1 cut(s)	910
Bst2UI	CCWGG	3 cut(s)	390, 769, 971
Bst4CI	ACNGT	3 cut(s)	27, 556, 607
Bst6I	CTCTTC	3 cut(s)	196, 588, 975
BstC8I	GCNNGC	5 cut(s)	6, 21, 32, 418, 498
BstDEI	CTNAG	4 cut(s)	338, 440, 659, 669
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	3 cut(s)	298, 743, 834
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	3 cut(s)	295, 740, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	945
BstNI	CCWGG	3 cut(s)	390, 769, 971
BstSCI	CCNGG	4 cut(s)	34, 388, 767, 969
BstSLI	GKGCMC	2 cut(s)	429, 573
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	387, 708
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
BstZ17I	GTATAC	1 cut(s)	910
BsuRI	GGCC	3 cut(s)	767, 892, 917
BtsIMutI	CAGTG	3 cut(s)	32, 448, 603
Cac8I	GCNNGC	5 cut(s)	6, 21, 32, 418, 498
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	765
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	50, 317
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	4 cut(s)	338, 440, 659, 669
DpnI	GATC	3 cut(s)	297, 742, 833
DpnII	GATC	3 cut(s)	295, 740, 831
EaeI	YGGCCR	1 cut(s)	915
Eam1104I	CTCTTC	3 cut(s)	196, 588, 975
EarI	CTCTTC	3 cut(s)	196, 588, 975
EciI	GGCGGA	1 cut(s)	1034
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	2 cut(s)	220, 249
Eco57I	CTGAAG	2 cut(s)	332, 428
Eco88I	CYCGRG	1 cut(s)	501
EcoRII	CCWGG	3 cut(s)	388, 767, 969
EcoRV	GATATC	2 cut(s)	220, 249
EcoT38I	GRGCYC	1 cut(s)	533
FaeI	CATG	2 cut(s)	53, 320
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	2 cut(s)	49, 316
FauNDI	CATATG	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	2 cut(s)	376, 697
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	376, 697
FspBI	CTAG	1 cut(s)	1004
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	2 cut(s)	376, 697
HaeIII	GGCC	3 cut(s)	767, 892, 917
HapII	CCGG	2 cut(s)	35, 582
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	2 cut(s)	6, 8
Hin1II	CATG	2 cut(s)	53, 320
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HindIII	AAGCTT	2 cut(s)	749, 860
HinfI	GANTC	6 cut(s)	92, 121, 183, 322, 538, 725
HpaII	CCGG	2 cut(s)	35, 582
HphI	GGTGA	4 cut(s)	99, 134, 173, 596
Hpy166II	GTNNAC	3 cut(s)	427, 571, 910
Hpy188I	TCNGA	4 cut(s)	85, 241, 408, 670
Hpy188III	TCNNGA	9 cut(s)	50, 310, 326, 434, 491, 503, 546, 756, 820
Hpy8I	GTNNAC	3 cut(s)	427, 571, 910
HpyAV	CCTTC	5 cut(s)	114, 138, 403, 794, 1003
HpyCH4III	ACNGT	3 cut(s)	27, 556, 607
HpyCH4V	TGCA	8 cut(s)	23, 178, 375, 427, 446, 462, 571, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	945
HpyF3I	CTNAG	4 cut(s)	338, 440, 659, 669
Hsp92II	CATG	2 cut(s)	53, 320
HspAI	GCGC	2 cut(s)	4, 6
Kzo9I	GATC	3 cut(s)	295, 740, 831
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	2 cut(s)	387, 708
LweI	GCATC	2 cut(s)	449, 720
MaeI	CTAG	1 cut(s)	1004
MaeIII	GTNAC	4 cut(s)	62, 556, 584, 640
MalI	GATC	3 cut(s)	297, 742, 833
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	295, 740, 831
MboII	GAAGA	6 cut(s)	213, 243, 605, 686, 720, 992
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	5 cut(s)	429, 533, 573, 955, 1000
MlsI	TGGCCA	1 cut(s)	917
MluCI	AATT	4 cut(s)	393, 928, 987, 1037
MluNI	TGGCCA	1 cut(s)	917
MlyI	GAGTC	2 cut(s)	177, 532
Mox20I	TGGCCA	1 cut(s)	917
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	917
MseI	TTAA	4 cut(s)	303, 845, 942, 1044
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	917
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	35, 582
MspR9I	CCNGG	4 cut(s)	36, 390, 769, 971
MvaI	CCWGG	3 cut(s)	390, 769, 971
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	945
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	3 cut(s)	295, 740, 831
NlaIII	CATG	2 cut(s)	53, 320
NlaIV	GGNNCC	2 cut(s)	45, 959
NmeAIII	GCCGAG	1 cut(s)	934
NmuCI	GTSAC	4 cut(s)	62, 556, 584, 640
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	1 cut(s)	49
PauI	GCGCGC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	92, 121, 322, 725
PflFI	GACNNNGTC	2 cut(s)	541, 562
PflMI	CCANNNNNTGG	1 cut(s)	899
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	377, 698
PleI	GAGTC	2 cut(s)	177, 532
PpsI	GAGTC	2 cut(s)	177, 532
Psp6I	CCWGG	3 cut(s)	388, 767, 969
PspGI	CCWGG	3 cut(s)	388, 767, 969
PspN4I	GGNNCC	2 cut(s)	45, 959
PspPI	GGNCC	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	831
PsyI	GACNNNGTC	2 cut(s)	541, 562
PteI	GCGCGC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	4 cut(s)	303, 845, 942, 1044
SatI	GCNGC	2 cut(s)	376, 697
Sau3AI	GATC	3 cut(s)	295, 740, 831
Sau96I	GGNCC	1 cut(s)	765
SchI	GAGTC	2 cut(s)	177, 532
ScrFI	CCNGG	4 cut(s)	36, 390, 769, 971
SduI	GDGCHC	5 cut(s)	429, 533, 573, 955, 1000
SfaNI	GCATC	2 cut(s)	449, 720
Sfr274I	CTCGAG	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	362, 491, 501, 733
SmoI	CTYRAG	4 cut(s)	362, 491, 501, 733
Sse9I	AATT	4 cut(s)	393, 928, 987, 1037
SsiI	CCGC	3 cut(s)	138, 948, 1019
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	1004
StyD4I	CCNGG	4 cut(s)	34, 388, 767, 969
TaaI	ACNGT	3 cut(s)	27, 556, 607
TaqI	TCGA	2 cut(s)	325, 502
TaqII	GACCGA	2 cut(s)	803, 842
TasI	AATT	4 cut(s)	393, 928, 987, 1037
TfiI	GAWTC	4 cut(s)	92, 121, 322, 725
Tru1I	TTAA	4 cut(s)	303, 845, 942, 1044
Tru9I	TTAA	4 cut(s)	303, 845, 942, 1044
TscAI	CASTG	3 cut(s)	32, 448, 610
TseFI	GTSAC	4 cut(s)	62, 556, 584, 640
TseI	GCWGC	2 cut(s)	375, 696
Tsp45I	GTSAC	4 cut(s)	62, 556, 584, 640
TspDTI	ATGAA	3 cut(s)	668, 831, 993
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	3 cut(s)	32, 448, 610
Tth111I	GACNNNGTC	2 cut(s)	541, 562
Van91I	CCANNNNNTGG	1 cut(s)	899
VneI	GTGCAC	2 cut(s)	425, 569
XapI	RAATTY	3 cut(s)	393, 987, 1037
XhoI	CTCGAG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	909
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.