Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Forward (+)

24962411 .. 24976820

Gene Structure 14410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAACTCAGATCCTTGATACATAAGCCTGTGACTGATTCTCGTGCTCGAGTTAGTGAAAGGGTGTATTCTAGACATCAGAAAATCATGCGCGCACCATCATTGCTTGCACAGTGCTTGCCGGGCTTGGTGCCTCATGACAAAGCAAGTCAGAGCTTGTCCTCCATTTCCGAGAGAGAATCACATCTCCCTTCACCAGCTGTCGAGATTCTCCCTTCCAAGTCAGCTCACCCATACAAGTATGCTGGTGAGAATATTGACTTGCAAGGACTCAATGCGTCAAAGGGAAGAGTTAGTGTTGCTGATATCATCGGCTTCAATGGTTCAGAAATGATATCTTCAAAACCAGATGGGTATCTAAAATCTTGGGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCGAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTGAGCTGGGTTGCAGCTATGGCCTTCCAGGAATTTTTGCTTGTCTGAAGGGAGCGGGCACAGTGCACTTTCAAGACCTCAGTGCAGAAAGTATTAGATGCACAACAATACCAAATGTCCTTGCCAATCTTGAGCAAGCTCGAGATAGGCAGAGCCGACAGCCAGAGAGCCCCCTGACTCCATCAAGACAAACTGTGACCCAGTCGGTGCACTTTTATGCTGGTGACTGGGAAGAGCTTCCCACTGTCTTGTCTGTTGTGAGGAATGATGGGTTTGAAGTGACAGCAGGAATGAACCTGAGCTTCTCTGAGGAAGATTTTATGGAGGGTTGTAGCAGCAGCCAAGATGGAAGCATCTTGGGGCAAGAATCTTCCTCAAGGCGATCAAGGAAGCTTTCAGGAAGTCGGGCATGGGAGAGAGCGAGTGAGACCGAACAAGGAGAAGGTGGATATGATATTATCTTGATGACCGAGATCCCATATTCGTTAACCTCATTGAAAAAGCTTTATGCACTCATAAAAAAGTGTTCAAGGCCACCATATGGTGTTGTATACTTGGCCACAAAAAGGAATTATGTTGGCTTTAACGGCGGTGCTCGGCACCTGAAAAGCCTGGTAGATGAAGAGGGAATTTTTGGTGCTCATCTAGTGAAGGAGATGGCGGACAGAGATGTATGGAAATTTTTTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

380

Amino Acids

42.06

Weight (kDa)

8.13

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	130, 1047
AccB7I	CCANNNNNTGG	1 cut(s)	989
AccBSI	CCGCTC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	503, 1038, 1109
AclWI	GGATC	2 cut(s)	6, 916
AcoI	YGGCCR	1 cut(s)	1005
AcsI	RAATTY	3 cut(s)	480, 1077, 1127
AcuI	CTGAAG	2 cut(s)	419, 515
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	2 cut(s)	989, 1014
AgsI	TTSAA	6 cut(s)	319, 342, 521, 725, 946, 978
AjnI	CCWGG	2 cut(s)	475, 1059
Alw21I	GWGCWC	5 cut(s)	49, 516, 660, 1045, 1090
Alw26I	GTCTC	1 cut(s)	869
Alw44I	GTGCAC	2 cut(s)	512, 656
AlwI	GGATC	2 cut(s)	6, 916
Ama87I	CYCGRG	2 cut(s)	48, 588
AoxI	GGCC	3 cut(s)	469, 980, 1005
ApaLI	GTGCAC	2 cut(s)	512, 656
ApeKI	GCWGC	3 cut(s)	462, 783, 786
ApoI	RAATTY	3 cut(s)	480, 1077, 1127
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	93, 95
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	186, 221, 260, 683
AvaI	CYCGRG	2 cut(s)	48, 588
BaeGI	GKGCMC	3 cut(s)	509, 516, 660
BalI	TGGCCA	1 cut(s)	1007
BanI	GGYRCC	2 cut(s)	130, 1047
BanII	GRGCYC	1 cut(s)	620
BauI	CACGAG	1 cut(s)	42
Bbv12I	GWGCWC	5 cut(s)	49, 516, 660, 1045, 1090
BbvI	GCAGC	3 cut(s)	474, 795, 798
BccI	CCATC	7 cut(s)	106, 344, 410, 637, 710, 788, 1099
BceAI	ACGGC	1 cut(s)	1051
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	2 cut(s)	477, 1061
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	869
BfaI	CTAG	2 cut(s)	72, 1094
BisI	GCNGC	3 cut(s)	463, 784, 787
BlsI	GCNGC	3 cut(s)	464, 785, 788
Bme1390I	CCNGG	3 cut(s)	123, 477, 1061
BmeT110I	CYCGRG	2 cut(s)	48, 588
BmiI	GGNNCC	2 cut(s)	132, 1049
BmrFI	CCNGG	3 cut(s)	123, 477, 1061
BmrI	ACTGGG	2 cut(s)	643, 685
BmsI	GCATC	2 cut(s)	536, 810
BmuI	ACTGGG	2 cut(s)	643, 685
Bpu10I	CCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	3 cut(s)	470, 599, 808
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	2 cut(s)	989, 1014
Bse1I	ACTGG	2 cut(s)	649, 680
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	477, 1061
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	989, 1014
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	5 cut(s)	22, 416, 541, 737, 747
BseNI	ACTGG	2 cut(s)	649, 680
BsePI	GCGCGC	1 cut(s)	91
BseSI	GKGCMC	3 cut(s)	509, 516, 660
BseXI	GCAGC	3 cut(s)	474, 795, 798
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	471, 982, 1007
BshNI	GGYRCC	2 cut(s)	130, 1047
BsiHKAI	GWGCWC	5 cut(s)	49, 516, 660, 1045, 1090
BsiHKCI	CYCGRG	2 cut(s)	48, 588
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	989, 1014
BsmAI	GTCTC	1 cut(s)	869
BsnI	GGCC	3 cut(s)	471, 982, 1007
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	2 cut(s)	48, 588
Bsp1286I	GDGCHC	7 cut(s)	49, 509, 516, 620, 660, 1045, 1090
Bsp143I	GATC	4 cut(s)	11, 382, 830, 921
BspACI	CCGC	3 cut(s)	503, 1038, 1109
BspANI	GGCC	3 cut(s)	471, 982, 1007
BspCNI	CTCAG	5 cut(s)	21, 417, 540, 738, 748
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	132, 1049
BspPI	GGATC	2 cut(s)	6, 916
BspQI	GCTCTTC	1 cut(s)	675
BspT107I	GGYRCC	2 cut(s)	130, 1047
BspTNI	GGTCTC	1 cut(s)	869
BsrBI	CCGCTC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	649, 680
BssHII	GCGCGC	1 cut(s)	91
BssMI	GATC	4 cut(s)	11, 382, 830, 921
BssNAI	GTATAC	1 cut(s)	1000
BssSI	CACGAG	1 cut(s)	42
Bst1107I	GTATAC	1 cut(s)	1000
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	477, 1061
Bst4CI	ACNGT	4 cut(s)	114, 511, 643, 694
Bst6I	CTCTTC	3 cut(s)	283, 675, 1065
BstC8I	GCNNGC	5 cut(s)	93, 108, 119, 505, 585
BstDEI	CTNAG	5 cut(s)	8, 425, 527, 746, 756
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	93, 95
BstKTI	GATC	4 cut(s)	14, 385, 833, 924
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	4 cut(s)	11, 382, 830, 921
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 468, 1035
BstNI	CCWGG	2 cut(s)	477, 1061
BstSCI	CCNGG	3 cut(s)	121, 475, 1059
BstSLI	GKGCMC	3 cut(s)	509, 516, 660
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	474, 795, 798
BstX2I	RGATCY	2 cut(s)	11, 921
BstYI	RGATCY	2 cut(s)	11, 921
BstZ17I	GTATAC	1 cut(s)	1000
BsuRI	GGCC	3 cut(s)	471, 982, 1007
BtsIMutI	CAGTG	4 cut(s)	119, 516, 535, 690
Cac8I	GCNNGC	5 cut(s)	93, 108, 119, 505, 585
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	2 cut(s)	93, 95
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	4 cut(s)	88, 137, 404, 858
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	5 cut(s)	8, 425, 527, 746, 756
DpnI	GATC	4 cut(s)	13, 384, 832, 923
DpnII	GATC	4 cut(s)	11, 382, 830, 921
EaeI	YGGCCR	1 cut(s)	1005
Eam1104I	CTCTTC	3 cut(s)	283, 675, 1065
EarI	CTCTTC	3 cut(s)	283, 675, 1065
EciI	GGCGGA	1 cut(s)	1124
Eco24I	GRGCYC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	2 cut(s)	307, 336
Eco57I	CTGAAG	2 cut(s)	419, 515
Eco88I	CYCGRG	2 cut(s)	48, 588
EcoRII	CCWGG	2 cut(s)	475, 1059
EcoRV	GATATC	2 cut(s)	307, 336
EcoT38I	GRGCYC	1 cut(s)	620
FaeI	CATG	4 cut(s)	91, 140, 407, 861
FatI	CATG	4 cut(s)	87, 136, 403, 857
FauI	CCCGC	1 cut(s)	496
FauNDI	CATATG	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	3 cut(s)	463, 784, 787
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	3 cut(s)	463, 784, 787
FspBI	CTAG	2 cut(s)	72, 1094
GlaI	GCGC	2 cut(s)	92, 94
GluI	GCNGC	3 cut(s)	463, 784, 787
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	471, 982, 1007
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	2 cut(s)	93, 95
Hin1II	CATG	4 cut(s)	91, 140, 407, 861
Hin6I	GCGC	2 cut(s)	91, 93
HinP1I	GCGC	2 cut(s)	91, 93
HincII	GTYRAC	1 cut(s)	936
HindII	GTYRAC	1 cut(s)	936
HindIII	AAGCTT	2 cut(s)	839, 950
HinfI	GANTC	7 cut(s)	38, 179, 208, 270, 409, 625, 815
HpaI	GTTAAC	1 cut(s)	936
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	4 cut(s)	186, 221, 260, 683
Hpy166II	GTNNAC	4 cut(s)	514, 658, 936, 1000
Hpy188I	TCNGA	7 cut(s)	11, 81, 153, 172, 328, 495, 757
Hpy8I	GTNNAC	4 cut(s)	514, 658, 936, 1000
HpyAV	CCTTC	6 cut(s)	201, 225, 482, 490, 884, 1093
HpyCH4III	ACNGT	4 cut(s)	114, 511, 643, 694
HpyCH4V	TGCA	8 cut(s)	110, 265, 462, 514, 533, 549, 658, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 468, 1035
HpyF3I	CTNAG	5 cut(s)	8, 425, 527, 746, 756
Hsp92II	CATG	4 cut(s)	91, 140, 407, 861
HspAI	GCGC	2 cut(s)	91, 93
KspAI	GTTAAC	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	11, 382, 830, 921
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	3 cut(s)	474, 795, 798
LweI	GCATC	2 cut(s)	536, 810
MaeI	CTAG	2 cut(s)	72, 1094
MaeIII	GTNAC	4 cut(s)	31, 643, 671, 727
MalI	GATC	4 cut(s)	13, 384, 832, 923
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	4 cut(s)	11, 382, 830, 921
MboII	GAAGA	6 cut(s)	300, 330, 692, 773, 810, 1082
MflI	RGATCY	2 cut(s)	11, 921
MhlI	GDGCHC	7 cut(s)	49, 509, 516, 620, 660, 1045, 1090
MlsI	TGGCCA	1 cut(s)	1007
MluCI	AATT	4 cut(s)	480, 1018, 1077, 1127
MluNI	TGGCCA	1 cut(s)	1007
MlyI	GAGTC	2 cut(s)	264, 619
Mox20I	TGGCCA	1 cut(s)	1007
MroXI	GAANNNNTTC	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	4 cut(s)	390, 935, 1032, 1134
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	1007
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	3 cut(s)	123, 477, 1061
MvaI	CCWGG	2 cut(s)	477, 1061
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	123, 468, 1035
NciI	CCSGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	4 cut(s)	11, 382, 830, 921
NlaIII	CATG	4 cut(s)	91, 140, 407, 861
NlaIV	GGNNCC	2 cut(s)	132, 1049
NmeAIII	GCCGAG	1 cut(s)	1024
NmuCI	GTSAC	4 cut(s)	31, 643, 671, 727
PaeR7I	CTCGAG	2 cut(s)	48, 588
PagI	TCATGA	1 cut(s)	136
PauI	GCGCGC	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	5 cut(s)	38, 179, 208, 409, 815
PflFI	GACNNNGTC	1 cut(s)	649
PflMI	CCANNNNNTGG	1 cut(s)	989
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	464, 785, 788
PleI	GAGTC	2 cut(s)	264, 619
PpsI	GAGTC	2 cut(s)	264, 619
Psp6I	CCWGG	2 cut(s)	475, 1059
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	475, 1059
PspN4I	GGNNCC	2 cut(s)	132, 1049
PspXI	VCTCGAGB	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	11, 921
PsyI	GACNNNGTC	1 cut(s)	649
PteI	GCGCGC	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	4 cut(s)	390, 935, 1032, 1134
SatI	GCNGC	3 cut(s)	463, 784, 787
Sau3AI	GATC	4 cut(s)	11, 382, 830, 921
SchI	GAGTC	2 cut(s)	264, 619
ScrFI	CCNGG	3 cut(s)	123, 477, 1061
SduI	GDGCHC	7 cut(s)	49, 509, 516, 620, 660, 1045, 1090
SfaNI	GCATC	2 cut(s)	536, 810
Sfr274I	CTCGAG	2 cut(s)	48, 588
SlaI	CTCGAG	2 cut(s)	48, 588
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	5 cut(s)	48, 449, 578, 588, 823
SmoI	CTYRAG	5 cut(s)	48, 449, 578, 588, 823
Sse9I	AATT	4 cut(s)	480, 1018, 1077, 1127
SsiI	CCGC	3 cut(s)	503, 1038, 1109
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	72, 1094
StyD4I	CCNGG	3 cut(s)	121, 475, 1059
TaaI	ACNGT	4 cut(s)	114, 511, 643, 694
TaqI	TCGA	4 cut(s)	49, 204, 412, 589
TaqII	GACCGA	2 cut(s)	893, 932
TasI	AATT	4 cut(s)	480, 1018, 1077, 1127
TfiI	GAWTC	5 cut(s)	38, 179, 208, 409, 815
Tru1I	TTAA	4 cut(s)	390, 935, 1032, 1134
Tru9I	TTAA	4 cut(s)	390, 935, 1032, 1134
TscAI	CASTG	4 cut(s)	119, 516, 535, 697
TseFI	GTSAC	4 cut(s)	31, 643, 671, 727
TseI	GCWGC	3 cut(s)	462, 783, 786
Tsp45I	GTSAC	4 cut(s)	31, 643, 671, 727
TspDTI	ATGAA	2 cut(s)	755, 1083
TspRI	CASTG	4 cut(s)	119, 516, 535, 697
Tth111I	GACNNNGTC	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	989
VneI	GTGCAC	2 cut(s)	512, 656
XapI	RAATTY	3 cut(s)	480, 1077, 1127
XbaI	TCTAGA	1 cut(s)	71
XhoI	CTCGAG	2 cut(s)	48, 588
XmiI	GTMKAC	1 cut(s)	999
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	72, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.