Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Reverse (-)

17586408 .. 17591199

Gene Structure 4792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G190500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCGTGCACCATCATTGCTTGCACAATGTTTGCCTGGCTTGGTGCCTCATGAAAAAGGAAGTCATAGCATGTCTTCCATTTCTGAGAGAGAGCCACATCTCCCTTCACCAGCTGTTGAGATTGTCCCTTCAAAGACAGCTCACCCATATAAGTATGCGGGCGAGAATATTGAATTGCAAGGACTAAATGTGTTCAAGGGAAGAGTTAGTGTTTCTGATATCATCGGCTTCAATAGTTCAGAAATGATATCCTCAAAACCAGATGGTAGGCACACCGCATCTGAATCTTGGGATAGCTCCATTGATCTTGTTAATGTCCTTAAACATGAGATTCGAGATGGGCAACTGAGCTTTCGAGGAAAAAGGGTGGTTGAGCTAGGTTGCAACTATGGCCTTCCAGGGATTTTTGCATGCCTGAAGGGAGCTTCCACTGTGCACTTTCAAGACCTCAATGCAGAAACTATAAGATGTACAACTATACCAAATGTCCTTGCCAATCTTGAGCAGGCTCGAGACAAGCAGAGCCGACAGCCAGAGAGCCCCCTGACTCCATCAAGACAAACTCTGACCCAGTCTGTGCACTTTTATGCTGGTGACTGGGAAGAACTTCCCACTGTCTTGTCTCTTGTGAGGAATGATGGGTTTGAAGCGACGACGGGAATGCATCTAAGCTTCTCTGAGGAGGATTTTATGGATGGATGTAGCAGCCAAGATGGTAGCATCTTGGCACAAGAATCTTCTTCAAGGCGATCGAGGAAGCTTTCAGGAAGCCGGGCATGGGAGAGGGCTAGCGAGACAGAACAAGGAGGTGGATATGATATTATCCTGATGACAGAGATCCCATATTCGTTGACCTCGTTGAAGAAGTTCTACGGACTCATAAAAAAGTGTTTGAGGCCCCCATATGGAGTGCTGTACTTGGCCATGAAAAAGAATTACGTTGGCTTCAATGGCGCAGCTCGGCACTTGAAAAGCCTGGTAGATGAAGAAGGCATTTTTGGAGCCCATTTAGTGAAGGAGATGTCTGATAGAGATGTATGGAAATTTTTTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

353

Amino Acids

39.03

Weight (kDa)

6.61

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	2 cut(s)	158, 276
AclWI	GGATC	1 cut(s)	832
AcoI	YGGCCR	1 cut(s)	921
AcsI	RAATTY	1 cut(s)	1043
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	472, 917
AfiI	CCNNNNNNNGG	2 cut(s)	778, 905
AjnI	CCWGG	3 cut(s)	34, 397, 975
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	9 cut(s)	113, 140, 297, 351, 376, 425, 672, 760, 959
AluI	AGCT	9 cut(s)	113, 140, 297, 351, 376, 425, 672, 760, 959
Alw21I	GWGCWC	3 cut(s)	10, 438, 582
Alw26I	GTCTC	3 cut(s)	507, 627, 788
Alw44I	GTGCAC	3 cut(s)	6, 434, 578
AlwI	GGATC	1 cut(s)	832
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	3 cut(s)	391, 896, 921
ApaLI	GTGCAC	3 cut(s)	6, 434, 578
ApeKI	GCWGC	2 cut(s)	705, 956
ApoI	RAATTY	1 cut(s)	1043
Asp700I	GAANNNNTTC	2 cut(s)	606, 866
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	1 cut(s)	897
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	3 cut(s)	99, 134, 605
AsuNHI	GCTAGC	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	510
BaeGI	GKGCMC	3 cut(s)	10, 438, 582
BalI	TGGCCA	1 cut(s)	923
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	542, 1006
BarI	GAAGNNNNNNTAC	2 cut(s)	854, 886
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	3 cut(s)	10, 438, 582
BbvI	GCAGC	2 cut(s)	717, 968
BccI	CCATC	7 cut(s)	19, 257, 332, 559, 632, 689, 707
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciT130I	CCWGG	3 cut(s)	36, 399, 977
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	507, 627, 788
BfaI	CTAG	2 cut(s)	377, 789
BisI	GCNGC	2 cut(s)	706, 957
BlsI	GCNGC	2 cut(s)	707, 958
Bme1390I	CCNGG	4 cut(s)	36, 399, 773, 977
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	897
BmiI	GGNNCC	3 cut(s)	45, 899, 1003
BmrFI	CCNGG	4 cut(s)	36, 399, 773, 977
BmrI	ACTGGG	2 cut(s)	565, 607
BmsI	GCATC	3 cut(s)	287, 673, 729
BmtI	GCTAGC	1 cut(s)	792
BmuI	ACTGGG	2 cut(s)	565, 607
BpiI	GAAGAC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	521, 1037
BpuMI	CCSGG	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	778, 905
Bse1I	ACTGG	2 cut(s)	571, 602
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	3 cut(s)	36, 399, 977
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	700, 704
BseLI	CCNNNNNNNGG	2 cut(s)	778, 905
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	75, 338, 669
BseNI	ACTGG	2 cut(s)	571, 602
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	3 cut(s)	10, 438, 582
BseXI	GCAGC	2 cut(s)	717, 968
Bsh1285I	CGRYCG	1 cut(s)	752
BshFI	GGCC	3 cut(s)	393, 898, 923
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	752
BsiHKAI	GWGCWC	3 cut(s)	10, 438, 582
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	778, 905
BsmAI	GTCTC	3 cut(s)	507, 627, 788
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	3 cut(s)	393, 898, 923
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	5 cut(s)	10, 438, 542, 582, 1006
Bsp1407I	TGTACA	1 cut(s)	470
Bsp143I	GATC	3 cut(s)	304, 749, 837
BspACI	CCGC	2 cut(s)	158, 276
BspANI	GGCC	3 cut(s)	393, 898, 923
BspCNI	CTCAG	3 cut(s)	76, 339, 670
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	45, 899, 1003
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	1 cut(s)	832
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	571, 602
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	3 cut(s)	304, 749, 837
Bst2UI	CCWGG	3 cut(s)	36, 399, 977
Bst4CI	ACNGT	2 cut(s)	433, 616
Bst6I	CTCTTC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	470
BstC8I	GCNNGC	6 cut(s)	6, 21, 160, 412, 507, 790
BstDEI	CTNAG	4 cut(s)	84, 347, 668, 678
BstF5I	GGATG	2 cut(s)	700, 704
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	3 cut(s)	307, 752, 840
BstMAI	GTCTC	3 cut(s)	507, 627, 788
BstMBI	GATC	3 cut(s)	304, 749, 837
BstMCI	CGRYCG	1 cut(s)	752
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 951
BstNI	CCWGG	3 cut(s)	36, 399, 977
BstNSI	RCATGY	2 cut(s)	73, 414
BstSCI	CCNGG	4 cut(s)	34, 397, 771, 975
BstSLI	GKGCMC	3 cut(s)	10, 438, 582
BstV1I	GCAGC	2 cut(s)	717, 968
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	837
BstYI	RGATCY	1 cut(s)	837
BsuRI	GGCC	3 cut(s)	393, 898, 923
BtsCI	GGATG	2 cut(s)	700, 704
BtsIMutI	CAGTG	2 cut(s)	429, 612
Cac8I	GCNNGC	6 cut(s)	6, 21, 160, 412, 507, 790
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	956
Cfr13I	GGNCC	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	471, 916
CviAII	CATG	6 cut(s)	50, 70, 326, 411, 777, 925
CviQI	GTAC	2 cut(s)	471, 916
DdeI	CTNAG	4 cut(s)	84, 347, 668, 678
DpnI	GATC	3 cut(s)	306, 751, 839
DpnII	GATC	3 cut(s)	304, 749, 837
EaeI	YGGCCR	1 cut(s)	921
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	542, 1006
Eco32I	GATATC	2 cut(s)	220, 249
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRII	CCWGG	3 cut(s)	34, 397, 975
EcoRV	GATATC	2 cut(s)	220, 249
EcoT22I	ATGCAT	1 cut(s)	666
EcoT38I	GRGCYC	2 cut(s)	542, 1006
FaeI	CATG	6 cut(s)	53, 73, 329, 414, 780, 928
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	6 cut(s)	49, 69, 325, 410, 776, 924
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	2 cut(s)	706, 957
FokI	GGATG	2 cut(s)	707, 711
FriOI	GRGCYC	2 cut(s)	542, 1006
Fsp4HI	GCNGC	2 cut(s)	706, 957
FspBI	CTAG	2 cut(s)	377, 789
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	2 cut(s)	706, 957
HaeIII	GGCC	3 cut(s)	393, 898, 923
HapII	CCGG	1 cut(s)	772
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	6 cut(s)	53, 73, 329, 414, 780, 928
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	670, 758
HinfI	GANTC	5 cut(s)	284, 331, 547, 734, 876
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	3 cut(s)	99, 134, 605
Hpy166II	GTNNAC	4 cut(s)	8, 436, 580, 852
Hpy188I	TCNGA	7 cut(s)	85, 217, 241, 283, 567, 679, 1027
Hpy188III	TCNNGA	8 cut(s)	50, 335, 443, 500, 512, 555, 765, 826
Hpy8I	GTNNAC	4 cut(s)	8, 436, 580, 852
Hpy99I	CGWCG	2 cut(s)	655, 658
HpyAV	CCTTC	6 cut(s)	114, 138, 404, 412, 983, 1009
HpyCH4III	ACNGT	2 cut(s)	433, 616
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	9 cut(s)	8, 23, 178, 384, 410, 436, 455, 580, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 951
HpyF3I	CTNAG	4 cut(s)	84, 347, 668, 678
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	6 cut(s)	53, 73, 329, 414, 780, 928
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	3 cut(s)	304, 749, 837
LmnI	GCTCC	3 cut(s)	302, 422, 1001
Lsp1109I	GCAGC	2 cut(s)	717, 968
LweI	GCATC	3 cut(s)	287, 673, 729
MaeI	CTAG	2 cut(s)	377, 789
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	3 cut(s)	306, 751, 839
MboI	GATC	3 cut(s)	304, 749, 837
MboII	GAAGA	7 cut(s)	66, 213, 614, 729, 732, 874, 998
MflI	RGATCY	1 cut(s)	837
MhlI	GDGCHC	5 cut(s)	10, 438, 542, 582, 1006
MlsI	TGGCCA	1 cut(s)	923
MluCI	AATT	3 cut(s)	173, 934, 1043
MluNI	TGGCCA	1 cut(s)	923
MlyI	GAGTC	2 cut(s)	541, 870
Mox20I	TGGCCA	1 cut(s)	923
Mph1103I	ATGCAT	1 cut(s)	666
MroXI	GAANNNNTTC	2 cut(s)	606, 866
MscI	TGGCCA	1 cut(s)	923
MseI	TTAA	2 cut(s)	312, 321
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	923
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	4 cut(s)	36, 399, 773, 977
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	3 cut(s)	36, 399, 977
MwoI	GCNNNNNNNGC	2 cut(s)	390, 951
NciI	CCSGG	1 cut(s)	773
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	3 cut(s)	304, 749, 837
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	6 cut(s)	53, 73, 329, 414, 780, 928
NlaIV	GGNNCC	3 cut(s)	45, 899, 1003
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	666
NspI	RCATGY	2 cut(s)	73, 414
PaeI	GCATGC	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	510
PagI	TCATGA	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	854
PctI	GAATGC	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	606, 866
PfeI	GAWTC	3 cut(s)	284, 331, 734
PflFI	GACNNNGTC	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	707, 958
Ple19I	CGATCG	1 cut(s)	752
PleI	GAGTC	2 cut(s)	541, 870
PpsI	GAGTC	2 cut(s)	541, 870
Psp6I	CCWGG	3 cut(s)	34, 397, 975
PspGI	CCWGG	3 cut(s)	34, 397, 975
PspN4I	GGNNCC	3 cut(s)	45, 899, 1003
PspPI	GGNCC	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	837
PsyI	GACNNNGTC	1 cut(s)	571
PvuI	CGATCG	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	472, 917
RsaNI	GTAC	2 cut(s)	471, 916
RseI	CAYNNNNRTG	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	312, 321
SatI	GCNGC	2 cut(s)	706, 957
Sau3AI	GATC	3 cut(s)	304, 749, 837
Sau96I	GGNCC	1 cut(s)	897
SchI	GAGTC	2 cut(s)	541, 870
ScrFI	CCNGG	4 cut(s)	36, 399, 773, 977
SduI	GDGCHC	5 cut(s)	10, 438, 542, 582, 1006
SfaNI	GCATC	3 cut(s)	287, 673, 729
Sfr274I	CTCGAG	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	3 cut(s)	500, 510, 1052
SmoI	CTYRAG	3 cut(s)	500, 510, 1052
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	3 cut(s)	173, 934, 1043
SsiI	CCGC	2 cut(s)	158, 276
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	377, 789
StyD4I	CCNGG	4 cut(s)	34, 397, 771, 975
TaaI	ACNGT	2 cut(s)	433, 616
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	4 cut(s)	334, 355, 511, 752
TasI	AATT	3 cut(s)	173, 934, 1043
TatI	WGTACW	2 cut(s)	470, 915
TfiI	GAWTC	3 cut(s)	284, 331, 734
Tru1I	TTAA	2 cut(s)	312, 321
Tru9I	TTAA	2 cut(s)	312, 321
TscAI	CASTG	2 cut(s)	436, 619
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	2 cut(s)	705, 956
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	66, 941, 999
TspGWI	ACGGA	1 cut(s)	888
TspRI	CASTG	2 cut(s)	436, 619
Tth111I	GACNNNGTC	1 cut(s)	571
VneI	GTGCAC	3 cut(s)	6, 434, 578
XapI	RAATTY	1 cut(s)	1043
XceI	RCATGY	2 cut(s)	73, 414
XhoI	CTCGAG	1 cut(s)	510
XmnI	GAANNNNTTC	2 cut(s)	606, 866
XspI	CTAG	2 cut(s)	377, 789
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.