Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Forward (+)

32965360 .. 32968642

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG149500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCGCGCACCATCATTGCTTGCACAGTGCTTGCCAGGTTTGGTGCCTCATGACAAAGCAAGTCACAGCTTGTCCTCTATTTCAGAGAGAGAATCACATCTCCCTTCACCGGCTGTTGAGATTCTCCCTTCCAAGTCAGCTCACCCATACAAGTATGCTGGTGAGAATATTGACTTGCAAGGACTCAATGCGTCAAAGGGAAGAGTTAGTGTTGCTGATATCATCGGCTTCAATGGTTCAGAAATGATATCTTCAAAACCAGATGGGTATCTAAAATCTTGGGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCGAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTGAGCTGGGTTGCAGCTATGGCCTTCCAGGAATTTTTGCTTGTCTGAAGGGAGCGGGCACAGTGCACTTTCAAGACCTCAGTGCAGAAAGTATTAGATGCACAACAATACCAAATGTCCTTGCCAATCTTGAGCAAGCTCGAGATAGGCAGAGCCGACAGCCAGAGAGCCCCCTGACTCCATCAAGACAAACTGTGACCCAGTCGGTGCACTTTTATGCTGGTGACTGGGAAGAGCTTCCCACTGTATTGTCTGTTGTGAGGAATGATGGGTTTGAAGTGACAGCAGGAATGAACCTGAGCTTCTCTGAGGAAGATTTTATGGAGGGTTGTAGCAGCAGCCAAGATGGAAGCATCTTGGGACAAGAATCTTCCTCAAGGCGATCAAGGAAGCTTTCAGGAAGTCGGGCGTGGGAGAGAGCGAGTGAGACCGAACAAGGAGAAGGTGGATATGATATTATCTTGATGACCGAGATCCCATATTCATTAACCTCATTGAAAAAGTTTTATGCACTCATAAAAAAGGTCAGTTTCTTGGCTCCTTTAATCCCAATGTTTTCTTTTGGACAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

311

Amino Acids

33.99

Weight (kDa)

5.85

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	1 cut(s)	829
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	332, 428
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	5 cut(s)	232, 255, 434, 638, 859
AjnI	CCWGG	2 cut(s)	34, 388
Alw21I	GWGCWC	2 cut(s)	429, 573
Alw26I	GTCTC	1 cut(s)	782
Alw44I	GTGCAC	2 cut(s)	425, 569
AlwI	GGATC	1 cut(s)	829
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	1 cut(s)	382
ApaLI	GTGCAC	2 cut(s)	425, 569
ApeKI	GCWGC	3 cut(s)	375, 696, 699
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	6, 8
AsuHPI	GGTGA	4 cut(s)	99, 134, 173, 596
AvaI	CYCGRG	1 cut(s)	501
BaeGI	GKGCMC	3 cut(s)	422, 429, 573
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	2 cut(s)	429, 573
BbvI	GCAGC	3 cut(s)	387, 708, 711
BccI	CCATC	6 cut(s)	19, 257, 323, 550, 623, 701
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	36, 390
BcoDI	GTCTC	1 cut(s)	782
BisI	GCNGC	3 cut(s)	376, 697, 700
BlsI	GCNGC	3 cut(s)	377, 698, 701
Bme1390I	CCNGG	2 cut(s)	36, 390
BmeT110I	CYCGRG	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	45, 900
BmrFI	CCNGG	2 cut(s)	36, 390
BmrI	ACTGGG	2 cut(s)	556, 598
BmsI	GCATC	2 cut(s)	449, 723
BmuI	ACTGGG	2 cut(s)	556, 598
Bpu10I	CCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	3 cut(s)	383, 512, 721
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	562, 593
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	36, 390
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	329, 454, 650, 660
BseNI	ACTGG	2 cut(s)	562, 593
BsePI	GCGCGC	1 cut(s)	4
BseSI	GKGCMC	3 cut(s)	422, 429, 573
BseXI	GCAGC	3 cut(s)	387, 708, 711
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	429, 573
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	4 cut(s)	422, 429, 533, 573
Bsp143I	GATC	3 cut(s)	295, 743, 834
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	4 cut(s)	330, 453, 651, 661
BspFNI	CGCG	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	45, 900
BspPI	GGATC	1 cut(s)	829
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	782
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	562, 593
BssAI	RCCGGY	1 cut(s)	109
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	3 cut(s)	295, 743, 834
Bst2UI	CCWGG	2 cut(s)	36, 390
Bst4CI	ACNGT	4 cut(s)	27, 424, 556, 607
Bst6I	CTCTTC	2 cut(s)	196, 588
BstC8I	GCNNGC	5 cut(s)	6, 21, 32, 418, 498
BstDEI	CTNAG	4 cut(s)	338, 440, 659, 669
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	3 cut(s)	298, 746, 837
BstMAI	GTCTC	1 cut(s)	782
BstMBI	GATC	3 cut(s)	295, 743, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	2 cut(s)	36, 390
BstSCI	CCNGG	2 cut(s)	34, 388
BstSLI	GKGCMC	3 cut(s)	422, 429, 573
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	387, 708, 711
BstX2I	RGATCY	1 cut(s)	834
BstYI	RGATCY	1 cut(s)	834
BsuRI	GGCC	1 cut(s)	384
BtsIMutI	CAGTG	4 cut(s)	32, 429, 448, 603
Cac8I	GCNNGC	5 cut(s)	6, 21, 32, 418, 498
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	1 cut(s)	109
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	50, 317
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	4 cut(s)	338, 440, 659, 669
DpnI	GATC	3 cut(s)	297, 745, 836
DpnII	GATC	3 cut(s)	295, 743, 834
Eam1104I	CTCTTC	2 cut(s)	196, 588
EarI	CTCTTC	2 cut(s)	196, 588
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	782
Eco32I	GATATC	2 cut(s)	220, 249
Eco57I	CTGAAG	2 cut(s)	332, 428
Eco88I	CYCGRG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	34, 388
EcoRV	GATATC	2 cut(s)	220, 249
EcoT38I	GRGCYC	1 cut(s)	533
FaeI	CATG	2 cut(s)	53, 320
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	49, 316
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	376, 697, 700
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	376, 697, 700
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	3 cut(s)	376, 697, 700
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	2 cut(s)	6, 8
Hin1II	CATG	2 cut(s)	53, 320
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	6 cut(s)	92, 121, 183, 322, 538, 728
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	4 cut(s)	99, 134, 173, 596
Hpy166II	GTNNAC	2 cut(s)	427, 571
Hpy188I	TCNGA	4 cut(s)	85, 241, 408, 670
Hpy188III	TCNNGA	9 cut(s)	50, 310, 326, 434, 491, 503, 546, 759, 823
Hpy8I	GTNNAC	2 cut(s)	427, 571
HpyAV	CCTTC	5 cut(s)	114, 138, 395, 403, 797
HpyCH4III	ACNGT	4 cut(s)	27, 424, 556, 607
HpyCH4V	TGCA	8 cut(s)	23, 178, 375, 427, 446, 462, 571, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	4 cut(s)	338, 440, 659, 669
Hsp92II	CATG	2 cut(s)	53, 320
HspAI	GCGC	2 cut(s)	4, 6
Kzo9I	GATC	3 cut(s)	295, 743, 834
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	413, 904
Lsp1109I	GCAGC	3 cut(s)	387, 708, 711
LweI	GCATC	2 cut(s)	449, 723
MaeIII	GTNAC	4 cut(s)	62, 556, 584, 640
MalI	GATC	3 cut(s)	297, 745, 836
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	3 cut(s)	295, 743, 834
MboII	GAAGA	5 cut(s)	213, 243, 605, 686, 723
MflI	RGATCY	1 cut(s)	834
MhlI	GDGCHC	4 cut(s)	422, 429, 533, 573
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	2 cut(s)	177, 532
MnlI	CCTC	9 cut(s)	57, 85, 341, 449, 615, 664, 679, 745, 862
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	3 cut(s)	303, 848, 905
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	36, 390
MvaI	CCWGG	2 cut(s)	36, 390
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	3 cut(s)	295, 743, 834
NlaIII	CATG	2 cut(s)	53, 320
NlaIV	GGNNCC	2 cut(s)	45, 900
NmuCI	GTSAC	4 cut(s)	62, 556, 584, 640
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	1 cut(s)	49
PauI	GCGCGC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	92, 121, 322, 728
PflFI	GACNNNGTC	1 cut(s)	562
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	377, 698, 701
PleI	GAGTC	2 cut(s)	177, 532
PpsI	GAGTC	2 cut(s)	177, 532
Psp6I	CCWGG	2 cut(s)	34, 388
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	34, 388
PspN4I	GGNNCC	2 cut(s)	45, 900
PsuI	RGATCY	1 cut(s)	834
PsyI	GACNNNGTC	1 cut(s)	562
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	303, 848, 905
SatI	GCNGC	3 cut(s)	376, 697, 700
Sau3AI	GATC	3 cut(s)	295, 743, 834
SchI	GAGTC	2 cut(s)	177, 532
ScrFI	CCNGG	2 cut(s)	36, 390
SduI	GDGCHC	4 cut(s)	422, 429, 533, 573
SfaNI	GCATC	2 cut(s)	449, 723
Sfr274I	CTCGAG	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	362, 491, 501, 736
SmoI	CTYRAG	4 cut(s)	362, 491, 501, 736
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	416
SspI	AATATT	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	34, 388
TaaI	ACNGT	4 cut(s)	27, 424, 556, 607
TaqI	TCGA	2 cut(s)	325, 502
TaqII	GACCGA	2 cut(s)	806, 845
TasI	AATT	1 cut(s)	393
TfiI	GAWTC	4 cut(s)	92, 121, 322, 728
Tru1I	TTAA	3 cut(s)	303, 848, 905
Tru9I	TTAA	3 cut(s)	303, 848, 905
TscAI	CASTG	4 cut(s)	32, 429, 448, 610
TseFI	GTSAC	4 cut(s)	62, 556, 584, 640
TseI	GCWGC	3 cut(s)	375, 696, 699
Tsp45I	GTSAC	4 cut(s)	62, 556, 584, 640
TspDTI	ATGAA	2 cut(s)	668, 834
TspRI	CASTG	4 cut(s)	32, 429, 448, 610
Tth111I	GACNNNGTC	1 cut(s)	562
VneI	GTGCAC	2 cut(s)	425, 569
XapI	RAATTY	1 cut(s)	393
XhoI	CTCGAG	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.